Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures

Kopczynski, Dominik; Hoffmann, Nils; Peng, Bing; Liebisch, Gerhard; Spener, Friedrich; Ahrends, Robert

Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures

Kopczynski D, Hoffmann N, Peng B, Liebisch G, Spener F, Ahrends R (2022)
Analytical Chemistry: acs.analchem.1c05430.

Zeitschriftenaufsatz | E-Veröff. vor dem Druck | Englisch

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URL

https://pubs.acs.org/doi/10.1021/acs.analchem.1c05430#

DOI

https://doi.org/10.1021/acs.analchem.1c05430

Autor*in

Kopczynski, Dominik; Hoffmann, Nils^UniBi ; Peng, Bing; Liebisch, Gerhard; Spener, Friedrich; Ahrends, Robert

Einrichtung

Centrum für Biotechnologie

Abstract / Bemerkung

Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize systematic IUPAC-IUB fatty acyl names as stored, e.g., in the LIPID MAPS database and is perfectly suited to update lipid names in LIPID MAPS or HMDB databases to the latest nomenclature. Goslin 2.0 is available as a standalone web application with a REST API as well as C++, C#, Java, Python 3, and R libraries. Importantly, it can be easily included in lipidomics tools and scripts providing direct access to translation functions. All implementations are open source.

Erscheinungsjahr

2022

Zeitschriftentitel

Analytical Chemistry

Art.-Nr.

acs.analchem.1c05430

Urheberrecht / Lizenzen

Creative Commons Namensnennung 4.0 International Public License (CC-BY 4.0)

ISSN

0003-2700

eISSN

1520-6882

Page URI

https://pub.uni-bielefeld.de/record/2962357

Zitieren

Kopczynski D, Hoffmann N, Peng B, Liebisch G, Spener F, Ahrends R. Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry. 2022: acs.analchem.1c05430.

Kopczynski, D., Hoffmann, N., Peng, B., Liebisch, G., Spener, F., & Ahrends, R. (2022). Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry, acs.analchem.1c05430. https://doi.org/10.1021/acs.analchem.1c05430

Kopczynski, Dominik, Hoffmann, Nils, Peng, Bing, Liebisch, Gerhard, Spener, Friedrich, and Ahrends, Robert. 2022. “Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures”. Analytical Chemistry: acs.analchem.1c05430.

Kopczynski, D., Hoffmann, N., Peng, B., Liebisch, G., Spener, F., and Ahrends, R. (2022). Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry:acs.analchem.1c05430.

Kopczynski, D., et al., 2022. Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry, : acs.analchem.1c05430.

D. Kopczynski, et al., “Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures”, Analytical Chemistry, 2022, : acs.analchem.1c05430.

Kopczynski, D., Hoffmann, N., Peng, B., Liebisch, G., Spener, F., Ahrends, R.: Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry. : acs.analchem.1c05430 (2022).

Kopczynski, Dominik, Hoffmann, Nils, Peng, Bing, Liebisch, Gerhard, Spener, Friedrich, and Ahrends, Robert. “Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures”. Analytical Chemistry (2022): acs.analchem.1c05430.

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