mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics

Hoffmann N, Rein J, Sachsenberg T, Hartler J, Haug K, Mayer G, Alka O, Dayalan S, Pearce JTM, Rocca-Serra P, Qi D, et al. (2019)
Analytical Chemistry 91(5): 3302-3310.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Hoffmann, NilsUniBi; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T. M.; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin
Alle
Abstract / Bemerkung
Mass spectrometry (MS) is one of the primary techniques used for large-scale analysis of small molecules in metabolomics studies. To date, there has been little data format standardization in this field, as different software packages export results in different formats represented in XML or plain text, making data sharing, database deposition, and reanalysis highly challenging. Working within the consortia of the Metabolomics Standards Initiative, Proteomics Standards Initiative, and the Metabolomics Society, we have created mzTab-M to act as a common output format from analytical approaches using MS on small molecules. The format has been developed over several years, with input from a wide range of stakeholders. mzTab-M is a simple tab-separated text format, but importantly, the structure is highly standardized through the design of a detailed specification document, tightly coupled to validation software, and a mandatory controlled vocabulary of terms to populate it. The format is able to represent final quantification values from analyses, as well as the evidence trail in terms of features measured directly from MS (e.g., LC-MS, GC-MS, DIMS, etc.) and different types of approaches used to identify molecules. mzTab-M allows for ambiguity in the identification of molecules to be communicated clearly to readers of the files (both people and software). There are several implementations of the format available, and we anticipate widespread adoption in the field.
Erscheinungsjahr
2019
Zeitschriftentitel
Analytical Chemistry
Band
91
Ausgabe
5
Seite(n)
3302-3310
ISSN
0003-2700
eISSN
1520-6882
Page URI
https://pub.uni-bielefeld.de/record/2956712

Zitieren

Hoffmann N, Rein J, Sachsenberg T, et al. mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry. 2019;91(5):3302-3310.
Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., et al. (2019). mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry, 91(5), 3302-3310. https://doi.org/10.1021/acs.analchem.8b04310
Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pearce, J. T. M., Rocca-Serra, P., et al. (2019). mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry 91, 3302-3310.
Hoffmann, N., et al., 2019. mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry, 91(5), p 3302-3310.
N. Hoffmann, et al., “mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics”, Analytical Chemistry, vol. 91, 2019, pp. 3302-3310.
Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pearce, J.T.M., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Vizcaíno, J.A., Salek, R.M., Neumann, S., Jones, A.R.: mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical Chemistry. 91, 3302-3310 (2019).
Hoffmann, Nils, Rein, Joel, Sachsenberg, Timo, Hartler, Jürgen, Haug, Kenneth, Mayer, Gerhard, Alka, Oliver, Dayalan, Saravanan, Pearce, Jake T. M., Rocca-Serra, Philippe, Qi, Da, Eisenacher, Martin, Perez-Riverol, Yasset, Vizcaíno, Juan Antonio, Salek, Reza M., Neumann, Steffen, and Jones, Andrew R. “mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics”. Analytical Chemistry 91.5 (2019): 3302-3310.

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 30688441
PubMed | Europe PMC

Suchen in

Google Scholar