SeeVis — 3D space-time cube rendering for visualization of microfluidics image data
Nattkemper TW, Hattab G (2019)
Bioinformatics 35(10): 1802-1804.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Einrichtung
Abstract / Bemerkung
Motivation: Live cell imaging plays a pivotal role in understanding cell growth. Yet, there is a lack of
visualization alternatives for quick qualitative characterization of colonies.
Results: SeeVis is a Python workflow for automated and qualitative visualization of time-lapse microscopy
data. It automatically preprocesses the movie frames, finds particles, traces their trajectories, and
visualizes them in a space-time cube offering three different color mappings to highlight different features. It
supports the user in developing a mental model for the data. SeeVis completes these steps in 1.15 s/frame
and creates a visualization with a selected color mapping.
Stichworte
Bioimage Informatics;
Microfluidics
Erscheinungsjahr
2019
Zeitschriftentitel
Bioinformatics
Band
35
Ausgabe
10
Seite(n)
1802-1804
Urheberrecht / Lizenzen
ISSN
0266-7061
Page URI
https://pub.uni-bielefeld.de/record/2931637
Zitieren
Nattkemper TW, Hattab G. SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics. 2019;35(10):1802-1804.
Nattkemper, T. W., & Hattab, G. (2019). SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics, 35(10), 1802-1804. https://doi.org/10.1093/bioinformatics/bty889
Nattkemper, Tim Wilhelm, and Hattab, Georges. 2019. “SeeVis — 3D space-time cube rendering for visualization of microfluidics image data”. Bioinformatics 35 (10): 1802-1804.
Nattkemper, T. W., and Hattab, G. (2019). SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics 35, 1802-1804.
Nattkemper, T.W., & Hattab, G., 2019. SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics, 35(10), p 1802-1804.
T.W. Nattkemper and G. Hattab, “SeeVis — 3D space-time cube rendering for visualization of microfluidics image data”, Bioinformatics, vol. 35, 2019, pp. 1802-1804.
Nattkemper, T.W., Hattab, G.: SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics. 35, 1802-1804 (2019).
Nattkemper, Tim Wilhelm, and Hattab, Georges. “SeeVis — 3D space-time cube rendering for visualization of microfluidics image data”. Bioinformatics 35.10 (2019): 1802-1804.
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Daten bereitgestellt von European Bioinformatics Institute (EBI)
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Daten bereitgestellt von Europe PubMed Central.
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Daten bereitgestellt von Europe PubMed Central.
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