Nonlinear Dimensionality Reduction by Locally Linear Embedding

Roweis, S. T.; Lawrence, L. K.

Nonlinear Dimensionality Reduction by Locally Linear Embedding

Roweis ST, Lawrence LK (2000)
Science 290(5500): 2323-2326.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.1126/science.290.5500.2323

Autor*in

Roweis, S. T.; Lawrence, L. K.

Einrichtung

Technische Fakultät > AG Neuroinformatik

Abstract / Bemerkung

Many areas of science depend on exploratory data analysis and visualization. The need to analyze large amounts of multivariate data raises the fundamental problem of dimensionality reduction: how to discover compact representations of high-dimensional data. Here, we introduce locally linear embedding (LLE), an unsupervised learning algorithm that computes low-dimensional, neighborhood-preserving embeddings of high-dimensional inputs. Unlike clustering methods for local dimensionality reduction, LLE maps its inputs into a single global coordinate system of lower dimensionality, and its optimizations do not involve local minima. By exploiting the local symmetries of linear reconstructions, LLE is able to learn the global structure of nonlinear manifolds, such as those generated by images of faces or documents of text.

Erscheinungsjahr

2000

Zeitschriftentitel

Science

Band

290

Ausgabe

5500

Seite(n)

2323-2326

eISSN

1095-9203

Page URI

https://pub.uni-bielefeld.de/record/2714741

Zitieren

Roweis ST, Lawrence LK. Nonlinear Dimensionality Reduction by Locally Linear Embedding. Science. 2000;290(5500):2323-2326.

Roweis, S. T., & Lawrence, L. K. (2000). Nonlinear Dimensionality Reduction by Locally Linear Embedding. Science, 290(5500), 2323-2326. doi:10.1126/science.290.5500.2323

Roweis, S. T., and Lawrence, L. K. 2000. “Nonlinear Dimensionality Reduction by Locally Linear Embedding”. Science 290 (5500): 2323-2326.

Roweis, S. T., and Lawrence, L. K. (2000). Nonlinear Dimensionality Reduction by Locally Linear Embedding. Science 290, 2323-2326.

Roweis, S.T., & Lawrence, L.K., 2000. Nonlinear Dimensionality Reduction by Locally Linear Embedding. Science, 290(5500), p 2323-2326.

S.T. Roweis and L.K. Lawrence, “Nonlinear Dimensionality Reduction by Locally Linear Embedding”, Science, vol. 290, 2000, pp. 2323-2326.

Roweis, S.T., Lawrence, L.K.: Nonlinear Dimensionality Reduction by Locally Linear Embedding. Science. 290, 2323-2326 (2000).

Roweis, S. T., and Lawrence, L. K. “Nonlinear Dimensionality Reduction by Locally Linear Embedding”. Science 290.5500 (2000): 2323-2326.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

902 Zitationen in Europe PMC

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Principles of protein structural ensemble determination.
Bonomi M, Heller GT, Camilloni C, Vendruscolo M., Curr Opin Struct Biol 42(), 2017
PMID: 28063280

Forward Selection Component Analysis: Algorithms and Applications.
Puggini L, McLoone S., IEEE Trans Pattern Anal Mach Intell 39(12), 2017
PMID: 28103191

Bayesian Face Sketch Synthesis.
Wang N, Gao X, Sun L, Li J., IEEE Trans Image Process 26(3), 2017
PMID: 28092542

Single Image Super-Resolution Using Global Regression Based on Multiple Local Linear Mappings.
Choi JS, Kim M., IEEE Trans Image Process 26(3), 2017
PMID: 28092557

Learning to Hash With Optimized Anchor Embedding for Scalable Retrieval.
Guo Y, Ding G, Liu L, Han J, Shao L., IEEE Trans Image Process 26(3), 2017
PMID: 28092559

Robust Neighborhood Preserving Projection by Nuclear/L2,1-Norm Regularization for Image Feature Extraction.
Zhang Z, Li F, Zhao M, Zhang L, Yan S., IEEE Trans Image Process 26(4), 2017
PMID: 28103554

Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization.
Yang J, Wang H, Ding H, An N, Alterovitz G., BMC Bioinformatics 18(1), 2017
PMID: 28103789

High-Resolution Self-Gated Dynamic Abdominal MRI Using Manifold Alignment.
Chen X, Usman M, Baumgartner CF, Balfour DR, Marsden PK, Reader AJ, Prieto C, King AP., IEEE Trans Med Imaging 36(4), 2017
PMID: 28113339

3-D Morphology Prediction of Progressive Spinal Deformities From Probabilistic Modeling of Discriminant Manifolds.
Kadoury S, Mandel W, Roy-Beaudry M, Nault ML, Parent S., IEEE Trans Med Imaging 36(5), 2017
PMID: 28129153

Deep ensemble learning of sparse regression models for brain disease diagnosis.
Suk HI, Lee SW, Shen D, Alzheimer’s Disease Neuroimaging Initiative., Med Image Anal 37(), 2017
PMID: 28167394

Appearance-Based Gaze Estimation via Uncalibrated Gaze Pattern Recovery.
Lu F, Chen X, Sato Y., IEEE Trans Image Process 26(4), 2017
PMID: 28129156

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.
Zhou N, Yu X, Zhao T, Wen S, Wang F, Zhu W, Kurc T, Tannenbaum A, Saltz J, Gao Y., Proc SPIE Int Soc Opt Eng 10140(), 2017
PMID: 30344361

A Novel Graph Constructor for Semisupervised Discriminant Analysis: Combined Low-Rank and k-Nearest Neighbor Graph.
Zu B, Xia K, Pan Y, Niu W., Comput Intell Neurosci 2017(), 2017
PMID: 28316616

On biometric systems: electrocardiogram Gaussianity and data synthesis.
Louis W, Abdulnour S, Haghighi SJ, Hatzinakos D., EURASIP J Bioinform Syst Biol 2017(), 2017
PMID: 28270847

Subgroup detection in genotype data using invariant coordinate selection.
Fischer D, Honkatukia M, Tuiskula-Haavisto M, Nordhausen K, Cavero D, Preisinger R, Vilkki J., BMC Bioinformatics 18(1), 2017
PMID: 28302061

A new hybrid coding for protein secondary structure prediction based on primary structure similarity.
Li Z, Wang J, Zhang S, Zhang Q, Wu W., Gene 618(), 2017
PMID: 28322997

Local structure preserving sparse coding for infrared target recognition.
Han J, Yue J, Zhang Y, Bai L., PLoS One 12(3), 2017
PMID: 28323824

Multilinear Spatial Discriminant Analysis for Dimensionality Reduction.
Yuan S, Mao X, Chen L., IEEE Trans Image Process 26(6), 2017
PMID: 28333630

Unsupervised 2D Dimensionality Reduction with Adaptive Structure Learning.
Zhao X, Nie F, Wang S, Guo J, Xu P, Chen X., Neural Comput 29(5), 2017
PMID: 28333584

Polycyclic Aromatic Hydrocarbons (PAHs) in Exposed-Lawn Soils from 28 Urban Parks in the Megacity Guangzhou: Occurrence, Sources, and Human Health Implications.
Ke CL, Gu YG, Liu Q., Arch Environ Contam Toxicol 72(4), 2017
PMID: 28361187

Detecting phase transitions in collective behavior using manifold's curvature.
Gajamannage K, Bollt EM., Math Biosci Eng 14(2), 2017
PMID: 27879108

Bidirectional texture function image super-resolution using singular value decomposition.
Dong W, Shen HL, Pan ZW, Xin JH., Appl Opt 56(10), 2017
PMID: 28375235

Laplacian manifold regularization method for fluorescence molecular tomography.
He X, Wang X, Yi H, Chen Y, Zhang X, Yu J, He X., J Biomed Opt 22(4), 2017
PMID: 28430853

M-MRI: A Manifold-based Framework to Highly Accelerated Dynamic Magnetic Resonance Imaging.
Nakarmi U, Slavakis K, Lyu J, Ying L., Proc IEEE Int Symp Biomed Imaging 2017(), 2017
PMID: 30956752

Hippocampus Segmentation Based on Local Linear Mapping.
Pang S, Jiang J, Lu Z, Li X, Yang W, Huang M, Zhang Y, Feng Y, Huang W, Feng Q., Sci Rep 7(), 2017
PMID: 28368016

Low-Rank Embedding for Robust Image Feature Extraction.
Wai Keung Wong, Zhihui Lai, Jiajun Wen, Xiaozhao Fang, Yuwu Lu., IEEE Trans Image Process 26(6), 2017
PMID: 28410104

Using Dimensionality Reduction Techniques for Refining Passive Indoor Positioning Systems Based on Radio Fingerprinting.
Lopez-de-Teruel PE, Canovas O, Garcia FJ., Sensors (Basel) 17(4), 2017
PMID: 28420133

Supervised learning and dimension reduction techniques for quantification of retinal fluid in optical coherence tomography images.
Breger A, Ehler M, Bogunovic H, Waldstein SM, Philip AM, Schmidt-Erfurth U, Gerendas BS., Eye (Lond) 31(8), 2017
PMID: 28430181

Manifold Embedding and Semantic Segmentation for Intraoperative Guidance With Hyperspectral Brain Imaging.
Ravi D, Fabelo H, Callic GM, Yang GZ., IEEE Trans Med Imaging 36(9), 2017
PMID: 28436854

Geometry and Radiometry Invariant Matched Manifold Detection.
Sharon R, Francos JM, Hagege RR., IEEE Trans Image Process 26(9), 2017
PMID: 28463194

Scalable Image Coding Based on Epitomes.
Alain M, Guillemot C, Thoreau D, Guillotel P., IEEE Trans Image Process 26(8), 2017
PMID: 28499998

Discriminative Transformation for Multi-Dimensional Temporal Sequences.
Bing Su, Xiaoqing Ding, Changsong Liu, Hao Wang, Ying Wu., IEEE Trans Image Process 26(7), 2017
PMID: 28534772

Label Information Guided Graph Construction for Semi-Supervised Learning.
Zhuang L, Zhou Z, Gao S, Yin J, Lin Z, Ma Y., IEEE Trans Image Process 26(9), 2017
PMID: 28541200

Characterizing Dynamic Walking Patterns and Detecting Falls with Wearable Sensors Using Gaussian Process Methods.
Kim T, Park J, Heo S, Sung K, Park J., Sensors (Basel) 17(5), 2017
PMID: 28531125

Metabolite marker discovery for the detection of bladder cancer by comparative metabolomics.
Shao CH, Chen CL, Lin JY, Chen CJ, Fu SH, Chen YT, Chang YS, Yu JS, Tsui KH, Juo CG, Wu KP., Oncotarget 8(24), 2017
PMID: 28415579

Clustering: how much bias do we need?
Lorimer T, Held J, Stoop R., Philos Trans A Math Phys Eng Sci 375(2096), 2017
PMID: 28507238

Neural Manifolds for the Control of Movement.
Gallego JA, Perich MG, Miller LE, Solla SA., Neuron 94(5), 2017
PMID: 28595054

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics.
Romano SA, Pérez-Schuster V, Jouary A, Boulanger-Weill J, Candeo A, Pietri T, Sumbre G., PLoS Comput Biol 13(6), 2017
PMID: 28591182

Multimodal Similarity Gaussian Process Latent Variable Model.
Song G, Wang S, Huang Q, Tian Q., IEEE Trans Image Process 26(9), 2017
PMID: 28600247

Sensory Metrics of Neuromechanical Trust.
Softky W, Benford C., Neural Comput 29(9), 2017
PMID: 28599118

Face Hallucination Using Linear Models of Coupled Sparse Support.
Farrugia RA, Guillemot C., IEEE Trans Image Process 26(9), 2017
PMID: 28641259

Block-Diagonal Constrained Low-Rank and Sparse Graph for Discriminant Analysis of Image Data.
Guo T, Tan X, Zhang L, Xie C, Deng L., Sensors (Basel) 17(7), 2017
PMID: 28640206

A Kernel-Based Low-Rank (KLR) Model for Low-Dimensional Manifold Recovery in Highly Accelerated Dynamic MRI.
Nakarmi U, Wang Y, Lyu J, Liang D, Ying L., IEEE Trans Med Imaging 36(11), 2017
PMID: 28692970

Fast and Orthogonal Locality Preserving Projections for Dimensionality Reduction.
Rong Wang, Feiping Nie, Richang Hong, Xiaojun Chang, Xiaojun Yang, Weizhong Yu., IEEE Trans Image Process 26(10), 2017
PMID: 28708560

Local network component analysis for quantifying transcription factor activities.
Shi Q, Zhang C, Guo W, Zeng T, Lu L, Jiang Z, Wang Z, Liu J, Chen L., Methods 124(), 2017
PMID: 28710010

Similarity regularized sparse group lasso for cup to disc ratio computation.
Cheng J, Zhang Z, Tao D, Wong DWK, Liu J, Baskaran M, Aung T, Wong TY., Biomed Opt Express 8(8), 2017
PMID: 28856048

F-norm distance metric based robust 2DPCA and face recognition.
Li T, Li M, Gao Q, Xie D., Neural Netw 94(), 2017
PMID: 28806714

Task-dependent recurrent dynamics in visual cortex.
Tajima S, Koida K, Tajima CI, Suzuki H, Aihara K, Komatsu H., Elife 6(), 2017
PMID: 28737487

LLE Score: A New Filter-Based Unsupervised Feature Selection Method Based on Nonlinear Manifold Embedding and Its Application to Image Recognition.
Chao Yao, Ya-Feng Liu, Bo Jiang, Jungong Han, Junwei Han., IEEE Trans Image Process 26(11), 2017
PMID: 28767370

MR-NTD: Manifold Regularization Nonnegative Tucker Decomposition for Tensor Data Dimension Reduction and Representation.
Li X, Ng MK, Cong G, Ye Y, Wu Q., IEEE Trans Neural Netw Learn Syst 28(8), 2017
PMID: 28727548

Discriminative clustering on manifold for adaptive transductive classification.
Zhang Z, Jia L, Zhang M, Li B, Zhang L, Li F., Neural Netw 94(), 2017
PMID: 28822323

Toward Optimal Manifold Hashing via Discrete Locally Linear Embedding.
Rongrong Ji, Hong Liu, Liujuan Cao, Di Liu, Yongjian Wu, Feiyue Huang., IEEE Trans Image Process 26(11), 2017
PMID: 28783633

Out-of-Sample Extension for Dimensionality Reduction of Noisy Time Series.
Dadkhahi H, Duarte MF, Marlin BM., IEEE Trans Image Process 26(11), 2017
PMID: 28783635

Nonnegative Matrix Factorization with Rank Regularization and Hard Constraint.
Shang R, Liu C, Meng Y, Jiao L, Stolkin R., Neural Comput 29(9), 2017
PMID: 28777717

Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning.
Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y., PLoS One 12(8), 2017
PMID: 28786986

Reconstruction of normal forms by learning informed observation geometries from data.
Yair O, Talmon R, Coifman RR, Kevrekidis IG., Proc Natl Acad Sci U S A 114(38), 2017
PMID: 28831006

Estimating the intrinsic dimension of datasets by a minimal neighborhood information.
Facco E, d'Errico M, Rodriguez A, Laio A., Sci Rep 7(1), 2017
PMID: 28939866

Refined Spectral Clustering via Embedded Label Propagation.
Chang YS, Nie F, Li Z, Chang X, Huang H., Neural Comput 29(12), 2017
PMID: 28957021

Model-based branching point detection in single-cell data by K-branches clustering.
Chlis NK, Wolf FA, Theis FJ., Bioinformatics 33(20), 2017
PMID: 28582478

Internal force corrections with machine learning for quantum mechanics/molecular mechanics simulations.
Wu J, Shen L, Yang W., J Chem Phys 147(16), 2017
PMID: 29096448

Vicus: Exploiting local structures to improve network-based analysis of biological data.
Wang B, Huang L, Zhu Y, Kundaje A, Batzoglou S, Goldenberg A., PLoS Comput Biol 13(10), 2017
PMID: 29023470

The Hidden Flow Structure and Metric Space of Network Embedding Algorithms Based on Random Walks.
Gu W, Gong L, Lou X, Zhang J., Sci Rep 7(1), 2017
PMID: 29030547

Application of Deep Learning in Automated Analysis of Molecular Images in Cancer: A Survey.
Xue Y, Chen S, Qin J, Liu Y, Huang B, Chen H., Contrast Media Mol Imaging 2017(), 2017
PMID: 29114182

A Hyperspectral Image Classification Framework with Spatial Pixel Pair Features.
Ran L, Zhang Y, Wei W, Zhang Q., Sensors (Basel) 17(10), 2017
PMID: 29065535

Machine learning meets complex networks via coalescent embedding in the hyperbolic space.
Muscoloni A, Thomas JM, Ciucci S, Bianconi G, Cannistraci CV., Nat Commun 8(1), 2017
PMID: 29151574

Drug-Target Interaction Prediction through Label Propagation with Linear Neighborhood Information.
Zhang W, Chen Y, Li D., Molecules 22(12), 2017
PMID: 29186828

Similarity-based Regularized Latent Feature Model for Link Prediction in Bipartite Networks.
Wang W, Chen X, Jiao P, Jin D., Sci Rep 7(1), 2017
PMID: 29208988

Elastic K-means using posterior probability.
Zheng A, Jiang B, Li Y, Zhang X, Ding C., PLoS One 12(12), 2017
PMID: 29240756

A unified frame of predicting side effects of drugs by using linear neighborhood similarity.
Zhang W, Yue X, Liu F, Chen Y, Tu S, Zhang X., BMC Syst Biol 11(suppl 6), 2017
PMID: 29297371

Modelling neuroanatomical variation during childhood and adolescence with neighbourhood-preserving embedding.
Ball G, Adamson C, Beare R, Seal ML., Sci Rep 7(1), 2017
PMID: 29259302

Ensemble Manifold Rank Preserving for Acceleration-Based Human Activity Recognition.
Tao D, Jin L, Yuan Y, Xue Y., IEEE Trans Neural Netw Learn Syst 27(6), 2016
PMID: 25265635

Computational Patient Avatars for Surgery Planning.
González D, Cueto E, Chinesta F., Ann Biomed Eng 44(1), 2016
PMID: 26101033

Feature Importance in Nonlinear Embeddings (FINE): Applications in Digital Pathology.
Ginsburg SB, Lee G, Ali S, Madabhushi A., IEEE Trans Med Imaging 35(1), 2016
PMID: 26186772

Low-Rank Preserving Projections.
Lu Y, Lai Z, Xu Y, Li X, Zhang D, Yuan C., IEEE Trans Cybern 46(8), 2016
PMID: 26277014

Subspace Regularized Sparse Multitask Learning for Multiclass Neurodegenerative Disease Identification.
Zhu X, Suk HI, Lee SW, Shen D., IEEE Trans Biomed Eng 63(3), 2016
PMID: 26276982

A novel sparse coding algorithm for classification of tumors based on gene expression data.
Kolali Khormuji M, Bazrafkan M., Med Biol Eng Comput 54(6), 2016
PMID: 26337064

Multiple Representations-Based Face Sketch-Photo Synthesis.
Peng C, Gao X, Wang N, Tao D, Li X, Li J., IEEE Trans Neural Netw Learn Syst 27(11), 2016
PMID: 26357409

Default network connectivity decodes brain states with simulated microgravity.
Zeng LL, Liao Y, Zhou Z, Shen H, Liu Y, Liu X, Hu D., Cogn Neurodyn 10(2), 2016
PMID: 27066149

Structure-Preserving Binary Representations for RGB-D Action Recognition.
Yu M, Liu L, Shao L., IEEE Trans Pattern Anal Mach Intell 38(8), 2016
PMID: 26485473

Matched signal detection on graphs: Theory and application to brain imaging data classification.
Hu C, Sepulcre J, Johnson KA, Fakhri GE, Lu YM, Li Q., Neuroimage 125(), 2016
PMID: 26481679

Characterizing Awake and Anesthetized States Using a Dimensionality Reduction Method.
Mirsadeghi M, Behnam H, Shalbaf R, Jelveh Moghadam H., J Med Syst 40(1), 2016
PMID: 26573650

Scalable High-Performance Image Registration Framework by Unsupervised Deep Feature Representations Learning.
Wu G, Kim M, Wang Q, Munsell BC, Shen D., IEEE Trans Biomed Eng 63(7), 2016
PMID: 26552069

Local Feature Discriminant Projection.
Yu M, Shao L, Zhen X, He X., IEEE Trans Pattern Anal Mach Intell 38(9), 2016
PMID: 26552074

Feature Set Evaluation for Offline Handwriting Recognition Systems: Application to the Recurrent Neural Network Model.
Chherawala Y, Roy PP, Cheriet M., IEEE Trans Cybern 46(12), 2016
PMID: 26561491

Simultaneous CT-MRI Reconstruction for Constrained Imaging Geometries Using Structural Coupling and Compressive Sensing.
Xi Y, Zhao J, Bennett JR, Stacy MR, Sinusas AJ, Wang G., IEEE Trans Biomed Eng 63(6), 2016
PMID: 26672028

Dynamic MRI Using SmooThness Regularization on Manifolds (SToRM).
Poddar S, Jacob M., IEEE Trans Med Imaging 35(4), 2016
PMID: 26685228

Learning Linear Representation of Space Partitioning Trees Based on Unsupervised Kernel Dimension Reduction.
Hongming Shan, Junping Zhang, Kruger U., IEEE Trans Cybern 46(12), 2016
PMID: 28055934

Medoidshift clustering applied to genomic bulk tumor data.
Roman T, Xie L, Schwartz R., BMC Genomics 17 Suppl 1(), 2016
PMID: 26817708

Statistical shape analysis using 3D Poisson equation--A quantitatively validated approach.
Gao Y, Bouix S., Med Image Anal 30(), 2016
PMID: 26874288

Locally Embedding Autoencoders: A Semi-Supervised Manifold Learning Approach of Document Representation.
Wei C, Luo S, Ma X, Ren H, Zhang J, Pan L., PLoS One 11(1), 2016
PMID: 26784692

Serum-Based Culture Conditions Provoke Gene Expression Variability in Mouse Embryonic Stem Cells as Revealed by Single-Cell Analysis.
Guo G, Pinello L, Han X, Lai S, Shen L, Lin TW, Zou K, Yuan GC, Orkin SH., Cell Rep 14(4), 2016
PMID: 26804902

Chemoinformatic Classification Methods and their Applicability Domain.
Mathea M, Klingspohn W, Baumann K., Mol Inform 35(5), 2016
PMID: 27492083

Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data.
Dinov ID., Gigascience 5(), 2016
PMID: 26918190

Discriminative Semantic Subspace Analysis for Relevance Feedback.
Zhang L, Shum HP, Shao L., IEEE Trans Image Process 25(3), 2016
PMID: 26780793

Postoperative 3D spine reconstruction by navigating partitioning manifolds.
Kadoury S, Labelle H, Parent S., Med Phys 43(3), 2016
PMID: 26936692

Radiomics: a new application from established techniques.
Parekh V, Jacobs MA., Expert Rev Precis Med Drug Dev 1(2), 2016
PMID: 28042608

Reconstructing Face Image from the Thermal Infrared Spectrum to the Visible Spectrum.
Kresnaraman B, Deguchi D, Takahashi T, Mekada Y, Ide I, Murase H., Sensors (Basel) 16(4), 2016
PMID: 27110781

Extensions to a manifold learning framework for time-series analysis on dynamic manifolds in bioelectric signals.
Erem B, Martinez Orellana R, Hyde DE, Peters JM, Duffy FH, Stovicek P, Warfield SK, MacLeod RS, Tadmor G, Brooks DH., Phys Rev E 93(4), 2016
PMID: 27176304

Noise reduction in intracranial pressure signal using causal shape manifolds.
Rajagopal A, Hamilton RB, Scalzo F., Biomed Signal Process Control 28(), 2016
PMID: 28936230

Bayesian Nonparametric Clustering for Positive Definite Matrices.
Cherian A, Morellas V, Papanikolopoulos N., IEEE Trans Pattern Anal Mach Intell 38(5), 2016
PMID: 27046838

Cauchy graph embedding based diffusion model for salient object detection.
Tan Y, Li Y, Chen C, Yu JG, Tian J., J Opt Soc Am A Opt Image Sci Vis 33(5), 2016
PMID: 27140886

Regularized Embedded Multiple Kernel Dimensionality Reduction for Mine Signal Processing.
Li S, Liu B, Zhang C., Comput Intell Neurosci 2016(), 2016
PMID: 27247562

SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data.
Welch JD, Hartemink AJ, Prins JF., Genome Biol 17(1), 2016
PMID: 27215581

Face Recognition With Pose Variations and Misalignment via Orthogonal Procrustes Regression.
Tai Y, Yang J, Zhang Y, Luo L, Qian J, Chen Y., IEEE Trans Image Process 25(6), 2016
PMID: 27071166

Out-of-Sample Extrapolation utilizing Semi-Supervised Manifold Learning (OSE-SSL): Content Based Image Retrieval for Histopathology Images.
Sparks R, Madabhushi A., Sci Rep 6(), 2016
PMID: 27264985

Prediction of high-dimensional states subject to respiratory motion: a manifold learning approach.
Liu W, Sawant A, Ruan D., Phys Med Biol 61(13), 2016
PMID: 27299958

Proteomic systems evaluation of the molecular validity of preclinical psychosis models compared to schizophrenia brain pathology.
Cox DA, Gottschalk MG, Wesseling H, Ernst A, Cooper JD, Bahn S., Schizophr Res 177(1-3), 2016
PMID: 27335180

A Novel Pre-Processing Technique for Original Feature Matrix of Electronic Nose Based on Supervised Locality Preserving Projections.
Jia P, Huang T, Wang L, Duan S, Yan J, Wang L., Sensors (Basel) 16(7), 2016
PMID: 27376295

Supervised Filter Learning for Representation Based Face Recognition.
Bi C, Zhang L, Qi M, Zheng C, Yi Y, Wang J, Zhang B., PLoS One 11(7), 2016
PMID: 27416030

Adaptive Dimensionality Reduction with Semi-Supervision (AdDReSS): Classifying Multi-Attribute Biomedical Data.
Lee G, Romo Bucheli DE, Madabhushi A., PLoS One 11(7), 2016
PMID: 27421116

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Habib N, Li Y, Heidenreich M, Swiech L, Avraham-Davidi I, Trombetta JJ, Hession C, Zhang F, Regev A., Science 353(6302), 2016
PMID: 27471252

Survival analysis for high-dimensional, heterogeneous medical data: Exploring feature extraction as an alternative to feature selection.
Pölsterl S, Conjeti S, Navab N, Katouzian A., Artif Intell Med 72(), 2016
PMID: 27664504

node2vec: Scalable Feature Learning for Networks.
Grover A, Leskovec J., KDD 2016(), 2016
PMID: 27853626

Toward a severity index for ROP: An unsupervised approach.
Peng Tian, Ataer-Cansizoglu E, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RV, Campbell JP, Chiang MF, Erdogmus D., Conf Proc IEEE Eng Med Biol Soc 2016(), 2016
PMID: 28268567

A preliminary review of influential works in data-driven discovery.
Stalzer M, Mentzel C., Springerplus 5(1), 2016
PMID: 27540499

Accurate Estimation of the Intrinsic Dimension Using Graph Distances: Unraveling the Geometric Complexity of Datasets.
Granata D, Carnevale V., Sci Rep 6(), 2016
PMID: 27510265

Locality Preserving Projection Based on Endmember Extraction for Hyperspectral Image Dimensionality Reduction and Target Detection.
Wang Y, Huang S, Liu Z, Wang H, Liu D., Appl Spectrosc 70(9), 2016
PMID: 27566254

Correlation coefficient based supervised locally linear embedding for pulmonary nodule recognition.
Wu P, Xia K, Yu H., Comput Methods Programs Biomed 136(), 2016
PMID: 27686707

CAFÉ-Map: Context Aware Feature Mapping for mining high dimensional biomedical data.
Minhas FUAA, Asif A, Arif M., Comput Biol Med 79(), 2016
PMID: 27764717

Stratification of pseudoprogression and true progression of glioblastoma multiform based on longitudinal diffusion tensor imaging without segmentation.
Qian X, Tan H, Zhang J, Zhao W, Chan MD, Zhou X., Med Phys 43(11), 2016
PMID: 27806598

Charting molecular free-energy landscapes with an atlas of collective variables.
Hashemian B, Millán D, Arroyo M., J Chem Phys 145(17), 2016
PMID: 27825245

Manifold regularization for sparse unmixing of hyperspectral images.
Liu J, Zhang C, Zhang J, Li H, Gao Y., Springerplus 5(1), 2016
PMID: 27933263

Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex.
Cowley BR, Smith MA, Kohn A, Yu BM., PLoS Comput Biol 12(12), 2016
PMID: 27935935

Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations.
Torbati ME, Mitreva M, Gopalakrishnan V., Data (Basel) 1(3), 2016
PMID: 28239609

Person reidentification by minimum classification error-based KISS metric learning.
Tao D, Jin L, Wang Y, Li X., IEEE Trans Cybern 45(2), 2015
PMID: 25486658

A framework for optimal kernel-based manifold embedding of medical image data.
Zimmer VA, Lekadir K, Hoogendoorn C, Frangi AF, Piella G., Comput Med Imaging Graph 41(), 2015
PMID: 25008538

United iterative reconstruction for spectral computed tomography.
Xi Y, Chen Y, Tang R, Sun J, Zhao J., IEEE Trans Med Imaging 34(3), 2015
PMID: 25051547

Discriminative embedded clustering: a framework for grouping high-dimensional data.
Hou C, Nie F, Yi D, Tao D., IEEE Trans Neural Netw Learn Syst 26(6), 2015
PMID: 25095267

Nonlinear Topological Component Analysis: Application to Age-Invariant Face Recognition.
Bouchaffra D., IEEE Trans Neural Netw Learn Syst 26(7), 2015
PMID: 25134092

Manifold learning based ECG-free free-breathing cardiac CINE MRI.
Usman M, Atkinson D, Kolbitsch C, Schaeffter T, Prieto C., J Magn Reson Imaging 41(6), 2015
PMID: 25124545

Manifold Learning in MR spectroscopy using nonlinear dimensionality reduction and unsupervised clustering.
Yang G, Raschke F, Barrick TR, Howe FA., Magn Reson Med 74(3), 2015
PMID: 25199640

Extrasynaptic glutamate NMDA receptors: key players in striatal function.
Garcia-Munoz M, Lopez-Huerta VG, Carrillo-Reid L, Arbuthnott GW., Neuropharmacology 89(), 2015
PMID: 25239809

Manifold Adaptive Label Propagation for Face Clustering.
Pei X, Lyu Z, Chen C, Chen C., IEEE Trans Cybern 45(8), 2015
PMID: 25291812

Similarity Learning of Manifold Data.
Chen SB, Ding CH, Luo B., IEEE Trans Cybern 45(9), 2015
PMID: 25312973

Manifold learning on brain functional networks in aging.
Qiu A, Lee A, Tan M, Chung MK., Med Image Anal 20(1), 2015
PMID: 25476411

Echocardiography without electrocardiogram using nonlinear dimensionality reduction methods.
Shalbaf A, AlizadehSani Z, Behnam H., J Med Ultrason (2001) 42(2), 2015
PMID: 26576567

Label image constrained multiatlas selection.
Yan P, Cao Y, Yuan Y, Turkbey B, Choyke PL., IEEE Trans Cybern 45(6), 2015
PMID: 25415994

Large-Scale Unsupervised Hashing with Shared Structure Learning.
Liu X, Mu Y, Zhang D, Lang B, Li X., IEEE Trans Cybern 45(9), 2015
PMID: 25420275

Targeting accurate object extraction from an image: a comprehensive study of natural image matting.
Zhu Q, Shao L, Li X, Wang L., IEEE Trans Neural Netw Learn Syst 26(2), 2015
PMID: 25423658

Cell words: modelling the visual appearance of cells in histopathology images.
Sirinukunwattana K, Khan AM, Rajpoot NM., Comput Med Imaging Graph 42(), 2015
PMID: 25498246

Multilayer Joint Gait-Pose Manifolds for Human Gait Motion Modeling.
Ding M, Fan G., IEEE Trans Cybern 45(11), 2015
PMID: 25532201

Symmetric smoothing filters from global consistency constraints.
Haque SM, Pai GP, Govindu VM., IEEE Trans Image Process 24(5), 2015
PMID: 25532176

Robust action recognition via borrowing information across video modalities.
Tang NC, Lin YY, Hua JH, Wei SE, Weng MF, Liao HY., IEEE Trans Image Process 24(2), 2015
PMID: 25546860

Learning-regulated context relevant topographical map.
Hartono P, Hollensen P, Trappenberg T., IEEE Trans Neural Netw Learn Syst 26(10), 2015
PMID: 25546864

A new fully automated approach for aligning and comparing shapes.
Boyer DM, Puente J, Gladman JT, Glynn C, Mukherjee S, Yapuncich GS, Daubechies I., Anat Rec (Hoboken) 298(1), 2015
PMID: 25529243

Topological obstructions in the way of data-driven collective variables.
Hashemian B, Arroyo M., J Chem Phys 142(4), 2015
PMID: 25637964

A learning framework for age rank estimation based on face images with scattering transform.
Chang KY, Chen CS., IEEE Trans Image Process 24(3), 2015
PMID: 25576566

Twin support vector machine for clustering.
Wang Z, Shao YH, Bai L, Deng NY., IEEE Trans Neural Netw Learn Syst 26(10), 2015
PMID: 25576578

Multivariate pattern analysis reveals anatomical connectivity differences between the left and right mesial temporal lobe epilepsy.
Fang P, An J, Zeng LL, Shen H, Chen F, Wang W, Qiu S, Hu D., Neuroimage Clin 7(), 2015
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Sparse dissimilarity-constrained coding for glaucoma screening.
Cheng J, Yin F, Wong DW, Tao D, Liu J., IEEE Trans Biomed Eng 62(5), 2015
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Enhanced low-rank representation via sparse manifold adaption for semi-supervised learning.
Peng Y, Lu BL, Wang S., Neural Netw 65(), 2015
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Deformed graph laplacian for semisupervised learning.
Gong C, Liu T, Tao D, Fu K, Tu E, Yang J., IEEE Trans Neural Netw Learn Syst 26(10), 2015
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Automatic computation of left ventricular volume changes over a cardiac cycle from echocardiography images by nonlinear dimensionality reduction.
Alizadeh Sani Z, Shalbaf A, Behnam H, Shalbaf R., J Digit Imaging 28(1), 2015
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Scatter balance: an angle-based supervised dimensionality reduction.
Liu S, Feng L, Qiao H., IEEE Trans Neural Netw Learn Syst 26(2), 2015
PMID: 25608290

Systematic characterization of protein folding pathways using diffusion maps: application to Trp-cage miniprotein.
Kim SB, Dsilva CJ, Kevrekidis IG, Debenedetti PG., J Chem Phys 142(8), 2015
PMID: 25725756

A framework of joint graph embedding and sparse regression for dimensionality reduction.
Xiaoshuang Shi, Zhenhua Guo, Zhihui Lai, Yujiu Yang, Zhifeng Bao, Zhang D., IEEE Trans Image Process 24(4), 2015
PMID: 25706635

Computer-Aided Detection and diagnosis for prostate cancer based on mono and multi-parametric MRI: a review.
Lemaître G, Martí R, Freixenet J, Vilanova JC, Walker PM, Meriaudeau F., Comput Biol Med 60(), 2015
PMID: 25747341

Structure constrained semi-nonnegative matrix factorization for EEG-based motor imagery classification.
Lu N, Li T, Pan J, Ren X, Feng Z, Miao H., Comput Biol Med 60(), 2015
PMID: 25747342

L1-norm locally linear representation regularization multi-source adaptation learning.
Tao J, Wen S, Hu W., Neural Netw 69(), 2015
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A molecular dynamics study of oxygen ion diffusion in A-site ordered perovskite PrBaCo(2)O(5.5): data mining the oxygen trajectories.
Chen C, Chen D, Ciucci F., Phys Chem Chem Phys 17(12), 2015
PMID: 25716049

Scaling up graph-based semisupervised learning via prototype vector machines.
Zhang K, Lan L, Kwok JT, Vucetic S, Parvin B., IEEE Trans Neural Netw Learn Syst 26(3), 2015
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Multi-frame image super resolution based on sparse coding.
Kato T, Hino H, Murata N., Neural Netw 66(), 2015
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Cortical spatiotemporal dimensionality reduction for visual grouping.
Cocci G, Barbieri D, Citti G, Sarti A., Neural Comput 27(6), 2015
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Temporal ordering and registration of images in studies of developmental dynamics.
Dsilva CJ, Lim B, Lu H, Singer A, Kevrekidis IG, Shvartsman SY., Development 142(9), 2015
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Classification on the monogenic scale space: application to target recognition in SAR image.
Ganggang Dong, Gangyao Kuang., IEEE Trans Image Process 24(8), 2015
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Face sketch synthesis via sparse representation-based greedy search.
Shengchuan Zhang, Xinbo Gao, Nannan Wang, Jie Li, Mingjin Zhang., IEEE Trans Image Process 24(8), 2015
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PSF: A Unified Patient Similarity Evaluation Framework Through Metric Learning With Weak Supervision.
Fei Wang, Sun J., IEEE J Biomed Health Inform 19(3), 2015
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Graph embedded nonparametric mutual information for supervised dimensionality reduction.
Bouzas D, Arvanitopoulos N, Tefas A., IEEE Trans Neural Netw Learn Syst 26(5), 2015
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Robust Nonnegative Patch Alignment for Dimensionality Reduction.
You X, Ou W, Chen CL, Li Q, Zhu Z, Tang Y., IEEE Trans Neural Netw Learn Syst 26(11), 2015
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Random geometric prior forest for multiclass object segmentation.
Liu X, Song M, Tao D, Bu J, Chen C., IEEE Trans Image Process 24(10), 2015
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Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data.
Diggins KE, Ferrell PB, Irish JM., Methods 82(), 2015
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Echocardiogram enhancement using supervised manifold denoising.
Wu H, Huynh TT, Souvenir R., Med Image Anal 24(1), 2015
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A spectral graph regression model for learning brain connectivity of Alzheimer's disease.
Hu C, Cheng L, Sepulcre J, Johnson KA, Fakhri GE, Lu YM, Li Q., PLoS One 10(5), 2015
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Hashing on nonlinear manifolds.
Shen F, Shen C, Shi Q, van den Hengel A, Tang Z, Shen HT., IEEE Trans Image Process 24(6), 2015
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Local Laplacian Coding From Theoretical Analysis of Local Coding Schemes for Locally Linear Classification.
Pang J, Qin L, Zhang C, Zhang W, Huang Q, Yin B., IEEE Trans Cybern 45(12), 2015
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Local configuration pattern features for age-related macular degeneration characterization and classification.
Mookiah MR, Acharya UR, Fujita H, Koh JE, Tan JH, Noronha K, Bhandary SV, Chua CK, Lim CM, Laude A, Tong L., Comput Biol Med 63(), 2015
PMID: 26093788

Local Sparse Structure Denoising for Low-Light-Level Image.
Han J, Yue J, Zhang Y, Bai L., IEEE Trans Image Process 24(12), 2015
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Articulated Non-Rigid Point Set Registration for Human Pose Estimation from 3D Sensors.
Ge S, Fan G., Sensors (Basel) 15(7), 2015
PMID: 26131673

Content-based image retrieval of digitized histopathology in boosted spectrally embedded spaces.
Sridhar A, Doyle S, Madabhushi A., J Pathol Inform 6(), 2015
PMID: 26167385

Local manifold learning for multiatlas segmentation: application to hippocampal segmentation in healthy population and Alzheimer's disease.
Li XW, Li QL, Li SY, Li DY, Alzheimer's Disease Neuroimaging Initiative., CNS Neurosci Ther 21(10), 2015
PMID: 26122409

Full-space local topology extraction for cross-modal retrieval.
Zhang L, Zhang Y, Hong R, Tian Q., IEEE Trans Image Process 24(7), 2015
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Magnetic resonance imaging in Alzheimer's Disease Neuroimaging Initiative 2.
Jack CR, Barnes J, Bernstein MA, Borowski BJ, Brewer J, Clegg S, Dale AM, Carmichael O, Ching C, DeCarli C, Desikan RS, Fennema-Notestine C, Fjell AM, Fletcher E, Fox NC, Gunter J, Gutman BA, Holland D, Hua X, Insel P, Kantarci K, Killiany RJ, Krueger G, Leung KK, Mackin S, Maillard P, Malone IB, Mattsson N, McEvoy L, Modat M, Mueller S, Nosheny R, Ourselin S, Schuff N, Senjem ML, Simonson A, Thompson PM, Rettmann D, Vemuri P, Walhovd K, Zhao Y, Zuk S, Weiner M., Alzheimers Dement 11(7), 2015
PMID: 26194310

Bearing Fault Diagnosis Based on Statistical Locally Linear Embedding.
Wang X, Zheng Y, Zhao Z, Wang J., Sensors (Basel) 15(7), 2015
PMID: 26153771

Optimal combination of feature selection and classification via local hyperplane based learning strategy.
Cheng X, Cai H, Zhang Y, Xu B, Su W., BMC Bioinformatics 16(), 2015
PMID: 26159165

Novel Online Dimensionality Reduction Method with Improved Topology Representing and Radial Basis Function Networks.
Ni S, Lv J, Cheng Z, Li M., PLoS One 10(7), 2015
PMID: 26161960

A Class of Manifold Regularized Multiplicative Update Algorithms for Image Clustering.
Yang S, Yi Z, He X, Li X., IEEE Trans Image Process 24(12), 2015
PMID: 26186793

Similarity-balanced discriminant neighbor embedding and its application to cancer classification based on gene expression data.
Zhang L, Qian L, Ding C, Zhou W, Li F., Comput Biol Med 64(), 2015
PMID: 26232671

A simplicial complex-based approach to unmixing tumor progression data.
Roman T, Nayyeri A, Fasy BT, Schwartz R., BMC Bioinformatics 16(), 2015
PMID: 26264682

A Filter Feature Selection Method Based on MFA Score and Redundancy Excluding and It's Application to Tumor Gene Expression Data Analysis.
Li J, Su L, Pang Z., Interdiscip Sci 7(4), 2015
PMID: 26298581

Dual Graph Regularized Latent Low-Rank Representation for Subspace Clustering.
Yin M, Gao J, Lin Z, Shi Q, Guo Y., IEEE Trans Image Process 24(12), 2015
PMID: 26316125

Multi-atlas learner fusion: An efficient segmentation approach for large-scale data.
Asman AJ, Huo Y, Plassard AJ, Landman BA., Med Image Anal 26(1), 2015
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Learning Sample Specific Weights for Late Fusion.
Lai KT, Liu D, Chang SF, Chen MS., IEEE Trans Image Process 24(9), 2015
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Learning a Nonnegative Sparse Graph for Linear Regression.
Fang X, Xu Y, Li X, Lai Z, Wong WK., IEEE Trans Image Process 24(9), 2015
PMID: 25910093

Validation of clinical acceptability of an atlas-based segmentation algorithm for the delineation of organs at risk in head and neck cancer.
Hoang Duc AK, Eminowicz G, Mendes R, Wong SL, McClelland J, Modat M, Cardoso MJ, Mendelson AF, Veiga C, Kadir T, D'Souza D, Ourselin S., Med Phys 42(9), 2015
PMID: 26328953

Cross-Domain Matching with Squared-Loss Mutual Information.
Yamada M, Sigal L, Raptis M, Toyoda M, Chang Y, Sugiyama M., IEEE Trans Pattern Anal Mach Intell 37(9), 2015
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Multiple Manifold Clustering Using Curvature Constrained Path.
Babaeian A, Bayestehtashk A, Bandarabadi M., PLoS One 10(9), 2015
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Dimensionality Reduction by Integrating Sparse Representation and Fisher Criterion and its Applications.
Gao Q, Wang Q, Huang Y, Gao X, Hong X, Zhang H., IEEE Trans Image Process 24(12), 2015
PMID: 26394421

Evidence of a dissociation pattern in default mode subnetwork functional connectivity in schizophrenia.
Wang H, Zeng LL, Chen Y, Yin H, Tan Q, Hu D., Sci Rep 5(), 2015
PMID: 26419213

No-reference image sharpness assessment in autoregressive parameter space.
Gu K, Zhai G, Lin W, Yang X, Zhang W., IEEE Trans Image Process 24(10), 2015
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Silhouette analysis for human action recognition based on supervised temporal t-SNE and incremental learning.
Cheng J, Liu H, Wang F, Li H, Zhu C., IEEE Trans Image Process 24(10), 2015
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Efficient robust conditional random fields.
Song D, Liu W, Zhou T, Tao D, Meyer DA., IEEE Trans Image Process 24(10), 2015
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Reconstructing and analysing cellular states, space and time from gene expression profiles of many cells and single cells.
Francesconi M, Lehner B., Mol Biosyst 11(10), 2015
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Unsupervised Discovery of Subspace Trends.
Xu Y, Qiu P, Roysam B., IEEE Trans Pattern Anal Mach Intell 37(10), 2015
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Vision 20/20: Simultaneous CT-MRI--Next chapter of multimodality imaging.
Wang G, Kalra M, Murugan V, Xi Y, Gjesteby L, Getzin M, Yang Q, Cong W, Vannier M., Med Phys 42(10), 2015
PMID: 26429262

An enhanced data visualization method for diesel engine malfunction classification using multi-sensor signals.
Li Y, Wang Y, Zi Y, Zhang M., Sensors (Basel) 15(10), 2015
PMID: 26506347

Using Weighted Sparse Representation Model Combined with Discrete Cosine Transformation to Predict Protein-Protein Interactions from Protein Sequence.
Huang YA, You ZH, Gao X, Wong L, Wang L., Biomed Res Int 2015(), 2015
PMID: 26634213

Machine learning assembly landscapes from particle tracking data.
Long AW, Zhang J, Granick S, Ferguson AL., Soft Matter 11(41), 2015
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Automating X-ray Fluorescence Analysis for Rapid Astrobiology Surveys.
Thompson DR, Flannery DT, Lanka R, Allwood AC, Bue BD, Clark BC, Elam WT, Estlin TA, Hodyss RP, Hurowitz JA, Liu Y, Wade LA., Astrobiology 15(11), 2015
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The intrinsic geometry of the human brain connectome.
Ye AQ, Ajilore OA, Conte G, GadElkarim J, Thomas-Ramos G, Zhan L, Yang S, Kumar A, Magin RL, G Forbes A, Leow AD., Brain Inform 2(4), 2015
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Uncovering low-dimensional, miR-based signatures of acute myeloid and lymphoblastic leukemias with a machine-learning-driven network approach.
Candia J, Cherukuri S, Guo Y, Doshi KA, Banavar JR, Civin CI, Losert W., Converg Sci Phys Oncol 1(2), 2015
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Alternatively Constrained Dictionary Learning For Image Superresolution.
Lu X, Yuan Y, Yan P., IEEE Trans Cybern 44(3), 2014
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Joint embedding learning and sparse regression: a framework for unsupervised feature selection.
Hou C, Nie F, Li X, Yi D, Wu Y., IEEE Trans Cybern 44(6), 2014
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A Markov Random Field Groupwise Registration Framework for Face Recognition.
Liao S, Shen D, Chung AC., IEEE Trans Pattern Anal Mach Intell 36(4), 2014
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Semi-supervised linear discriminant clustering.
Liu CL, Hsaio WH, Lee CH, Gou FS., IEEE Trans Cybern 44(7), 2014
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A trace ratio maximization approach to multiple kernel-based dimensionality reduction.
Jiang W, Chung FL., Neural Netw 49(), 2014
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Structural Laplacian Eigenmaps for modeling sets of multivariate sequences.
Lewandowski M, Makris D, Velastin SA, Nebel JC., IEEE Trans Cybern 44(6), 2014
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Hierarchical manifold learning for regional image analysis.
Bhatia KK, Rao A, Price AN, Wolz R, Hajnal JV, Rueckert D., IEEE Trans Med Imaging 33(2), 2014
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Supervised orthogonal discriminant subspace projects learning for face recognition.
Chen Y, Xu XH., Neural Netw 50(), 2014
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Compressive manifold learning: estimating one-dimensional respiratory motion directly from undersampled k-space data.
Usman M, Vaillant G, Atkinson D, Schaeffter T, Prieto C., Magn Reson Med 72(4), 2014
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Visual perception of materials and their properties.
Fleming RW., Vision Res 94(), 2014
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Cross-sensor iris recognition through kernel learning.
Pillai JK, Puertas M, Chellappa R., IEEE Trans Pattern Anal Mach Intell 36(1), 2014
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Overview of object oriented data analysis.
Marron JS, Alonso AM., Biom J 56(5), 2014
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Collective behaviour across animal species.
DeLellis P, Polverino G, Ustuner G, Abaid N, Macrì S, Bollt EM, Porfiri M., Sci Rep 4(), 2014
PMID: 24430561

Understanding health and disease with multidimensional single-cell methods.
Candia J, Banavar JR, Losert W., J Phys Condens Matter 26(7), 2014
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Robust head pose estimation via supervised manifold learning.
Wang C, Song X., Neural Netw 53(), 2014
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Large margin low rank tensor analysis.
Zhong G, Cheriet M., Neural Comput 26(4), 2014
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Neighborhood repulsed metric learning for kinship verification.
Lu J, Zhou X, Tan YP, Shang Y, Zhou J., IEEE Trans Pattern Anal Mach Intell 36(2), 2014
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Enhanced low-latency detection of motor intention from EEG for closed-loop brain-computer interface applications.
Xu R, Jiang N, Lin C, Mrachacz-Kersting N, Dremstrup K, Farina D., IEEE Trans Biomed Eng 61(2), 2014
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Efficient dual approach to distance metric learning.
Shen C, Kim J, Liu F, Wang L, van den Hengel A., IEEE Trans Neural Netw Learn Syst 25(2), 2014
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Multilinear Graph Embedding: Representation and Regularization for Images.
Chen YL, Hsu CT., IEEE Trans Image Process 23(2), 2014
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Brain extraction based on locally linear representation-based classification.
Huang M, Yang W, Jiang J, Wu Y, Zhang Y, Chen W, Feng Q, Alzheimer's Disease Neuroimaging Initiative., Neuroimage 92(), 2014
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Individualized statistical learning from medical image databases: application to identification of brain lesions.
Erus G, Zacharaki EI, Davatzikos C., Med Image Anal 18(3), 2014
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A structure-based distance metric for high-dimensional space exploration with multidimensional scaling.
Lee JH, McDonnell KT, Zelenyuk A, Imre D, Mueller K., IEEE Trans Vis Comput Graph 20(3), 2014
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Function approximation using combined unsupervised and supervised learning.
Andras P., IEEE Trans Neural Netw Learn Syst 25(3), 2014
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Manifold Learning by Preserving Distance Orders.
Ataer-Cansizoglu E, Akcakaya M, Orhan U, Erdogmus D., Pattern Recognit Lett 38(), 2014
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Stable locality sensitive discriminant analysis for image recognition.
Gao Q, Liu J, Cui K, Zhang H, Wang X., Neural Netw 54(), 2014
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Multiview discriminative geometry preserving projection for image classification.
Wang Z, Sun X, Sun L, Huang Y., ScientificWorldJournal 2014(), 2014
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Unraveling flow patterns through nonlinear manifold learning.
Tauro F, Grimaldi S, Porfiri M., PLoS One 9(3), 2014
PMID: 24614890

Feature weight estimation for gene selection: a local hyperlinear learning approach.
Cai H, Ruan P, Ng M, Akutsu T., BMC Bioinformatics 15(), 2014
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Accelerating content-based image retrieval via GPU-adaptive index structure.
Zhu L., ScientificWorldJournal 2014(), 2014
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Manifold population modeling as a neuro-imaging biomarker: application to ADNI and ADNI-GO.
Guerrero R, Wolz R, Rao AW, Rueckert D, Alzheimer's Disease Neuroimaging Initiative (ADNI)., Neuroimage 94(), 2014
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Knowledge discovery by accuracy maximization.
Cacciatore S, Luchinat C, Tenori L., Proc Natl Acad Sci U S A 111(14), 2014
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Neural decoding with kernel-based metric learning.
Brockmeier AJ, Choi JS, Kriminger EG, Francis JT, Principe JC., Neural Comput 26(6), 2014
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Data-driven spatially-adaptive metric adjustment for visual tracking.
Jiang N, Liu W., IEEE Trans Image Process 23(4), 2014
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Manifold learning for object tracking with multiple nonlinear models.
Nascimento JC, Silva JG, Marques JS, Lemos JM., IEEE Trans Image Process 23(4), 2014
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Multimodal Similarity-Preserving Hashing.
Masci J, Bronstein MM, Bronstein AM, Schmidhuber J., IEEE Trans Pattern Anal Mach Intell 36(4), 2014
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A general soft label based linear discriminant analysis for semi-supervised dimensionality reduction.
Zhao M, Zhang Z, Chow TW, Li B., Neural Netw 55(), 2014
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Shape analysis, a field in need of careful validation.
Gao Y, Riklin-Raviv T, Bouix S., Hum Brain Mapp 35(10), 2014
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Population code in mouse V1 facilitates readout of natural scenes through increased sparseness.
Froudarakis E, Berens P, Ecker AS, Cotton RJ, Sinz FH, Yatsenko D, Saggau P, Bethge M, Tolias AS., Nat Neurosci 17(6), 2014
PMID: 24747577

Selecting protein families for environmental features based on manifold regularization.
Jiang X, Xu W, Park EK, Li G., IEEE Trans Nanobioscience 13(2), 2014
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Dual-geometric neighbor embedding for image super resolution with sparse tensor.
Yang S, Wang Z, Zhang L, Wang M., IEEE Trans Image Process 23(7), 2014
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Identification of temporal variations in mental workload using locally-linear-embedding-based EEG feature reduction and support-vector-machine-based clustering and classification techniques.
Yin Z, Zhang J., Comput Methods Programs Biomed 115(3), 2014
PMID: 24821400

A regularized approach for geodesic-based semisupervised multimanifold learning.
Fan M, Zhang X, Lin Z, Zhang Z, Bao H., IEEE Trans Image Process 23(5), 2014
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Actively learning human gaze shifting paths for semantics-aware photo cropping.
Zhang L, Gao Y, Ji R, Xia Y, Dai Q, Li X., IEEE Trans Image Process 23(5), 2014
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Information-theoretic semi-supervised metric learning via entropy regularization.
Niu G, Dai B, Yamada M, Sugiyama M., Neural Comput 26(8), 2014
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Regional manifold learning for disease classification.
Ye DH, Desjardins B, Hamm J, Litt H, Pohl KM., IEEE Trans Med Imaging 33(6), 2014
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High-resolution dynamic MR imaging of the thorax for respiratory motion correction of PET using groupwise manifold alignment.
Baumgartner CF, Kolbitsch C, Balfour DR, Marsden PK, McClelland JR, Rueckert D, King AP., Med Image Anal 18(7), 2014
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Compact Graph based Semi-Supervised Learning for Medical Diagnosis in Alzheimer's Disease.
Zhao M, Chan RH, Chow TW, Tang P., IEEE Signal Process Lett 21(10), 2014
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A novel matrix-similarity based loss function for joint regression and classification in AD diagnosis.
Zhu X, Suk HI, Shen D., Neuroimage 100(), 2014
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Joint target tracking, recognition and segmentation for infrared imagery using a shape manifold-based level set.
Gong J, Fan G, Yu L, Havlicek JP, Chen D, Fan N., Sensors (Basel) 14(6), 2014
PMID: 24919014

Euclidean sections of protein conformation space and their implications in dimensionality reduction.
Duan M, Li M, Han L, Huo S., Proteins 82(10), 2014
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Decomposition-based transfer distance metric learning for image classification.
Luo Y, Liu T, Tao D, Xu C., IEEE Trans Image Process 23(9), 2014
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Learning Markov Random Walks for robust subspace clustering and estimation.
Liu R, Lin Z, Su Z., Neural Netw 59(), 2014
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Identifying group discriminative and age regressive sub-networks from DTI-based connectivity via a unified framework of non-negative matrix factorization and graph embedding.
Ghanbari Y, Smith AR, Schultz RT, Verma R., Med Image Anal 18(8), 2014
PMID: 25037933

Group sparse multiview patch alignment framework with view consistency for image classification.
Gui J, Tao D, Sun Z, Luo Y, You X, Tang YY., IEEE Trans Image Process 23(7), 2014
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Scalable similarity search with topology preserving hashing.
Zhang L, Zhang Y, Gu X, Tang J, Tian Q., IEEE Trans Image Process 23(7), 2014
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Conformations of macromolecules and their complexes from heterogeneous datasets.
Schwander P, Fung R, Ourmazd A., Philos Trans R Soc Lond B Biol Sci 369(1647), 2014
PMID: 24914167

Decreased white matter integrity in mesial temporal lobe epilepsy: a machine learning approach.
An J, Fang P, Wang W, Liu Z, Hu D, Qiu S., Neuroreport 25(10), 2014
PMID: 24918460

New dimensionality reduction model (manifold learning) coupled with electronic tongue for green tea grade identification
Zhi R, Zhao L, Shi B, Jin Y., Eur Food Res Technol 239(1), 2014
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Learning Pullback HMM Distances.
Cuzzolin F, Sapienza M., IEEE Trans Pattern Anal Mach Intell 36(7), 2014
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Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation.
Su H, Xing F, Lee JD, Peterson CA, Yang L., IEEE/ACM Trans Comput Biol Bioinform 11(4), 2014
PMID: 26356342

Learning locality preserving graph from data.
Zhang YM, Huang K, Hou X, Liu CL., IEEE Trans Cybern 44(11), 2014
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A collaborative visual analytics suite for protein folding research.
Harvey W, Park IH, Rübel O, Pascucci V, Bremer PT, Li C, Wang Y., J Mol Graph Model 53(), 2014
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Dimensionality of object representations in monkey inferotemporal cortex.
Lehky SR, Kiani R, Esteky H, Tanaka K., Neural Comput 26(10), 2014
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Decoding and encoding of visual patterns using magnetoencephalographic data represented in manifolds.
Kuo PC, Chen YS, Chen LF, Hsieh JC., Neuroimage 102 Pt 2(), 2014
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Learning from errors in super-resolution.
Tang Y, Yuan Y., IEEE Trans Cybern 44(11), 2014
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Visualization and unsupervised predictive clustering of high-dimensional multimodal neuroimaging data.
Mwangi B, Soares JC, Hasan KM., J Neurosci Methods 236(), 2014
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Face super-resolution via multilayer locality-constrained iterative neighbor embedding and intermediate dictionary learning.
Jiang J, Hu R, Wang Z, Han Z., IEEE Trans Image Process 23(10), 2014
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Principal polynomial analysis.
Laparra V, Jiménez S, Tuia D, Camps-Valls G, Malo J., Int J Neural Syst 24(7), 2014
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Maximum margin projection subspace learning for visual data analysis.
Nikitidis S, Tefas A, Pitas I., IEEE Trans Image Process 23(10), 2014
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Deep learning for neuroimaging: a validation study.
Plis SM, Hjelm DR, Salakhutdinov R, Allen EA, Bockholt HJ, Long JD, Johnson HJ, Paulsen JS, Turner JA, Calhoun VD., Front Neurosci 8(), 2014
PMID: 25191215

Dimensionality reduction for large-scale neural recordings.
Cunningham JP, Yu BM., Nat Neurosci 17(11), 2014
PMID: 25151264

A review of feature extraction software for microarray gene expression data.
Tan CS, Ting WS, Mohamad MS, Chan WH, Deris S, Shah ZA., Biomed Res Int 2014(), 2014
PMID: 25250315

Generalized Laplacian eigenmaps for modeling and tracking human motions.
Martinez-del-Rincon J, Lewandowski M, Nebel JC, Makris D., IEEE Trans Cybern 44(9), 2014
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System light-loading technology for mHealth: Manifold-learning-based medical data cleansing and clinical trials in WE-CARE Project.
Huang A, Xu W, Li Z, Xie L, Sarrafzadeh M, Li X, Cong J., IEEE J Biomed Health Inform 18(5), 2014
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Diffusion maps, clustering and fuzzy Markov modeling in peptide folding transitions.
Nedialkova LV, Amat MA, Kevrekidis IG, Hummer G., J Chem Phys 141(11), 2014
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Evaluating predictive performance of network biomarkers with network structures.
Gao S, Karakira I, Afra S, Naji G, Alhajj R, Zeng J, Demetrick D., J Bioinform Comput Biol 12(5), 2014
PMID: 25219385

Cooperation-controlled learning for explicit class structure in self-organizing maps.
Kamimura R., ScientificWorldJournal 2014(), 2014
PMID: 25309950

An efficient approach for preprocessing data from a large-scale chemical sensor array.
Leo M, Distante C, Bernabei M, Persaud K., Sensors (Basel) 14(9), 2014
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Mapping the stereotyped behaviour of freely moving fruit flies.
Berman GJ, Choi DM, Bialek W, Shaevitz JW., J R Soc Interface 11(99), 2014
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TPSLVM: a dimensionality reduction algorithm based on thin plate splines.
Jiang X, Gao J, Wang T, Shi D., IEEE Trans Cybern 44(10), 2014
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Automated graph regularized projective nonnegative matrix factorization for document clustering.
Pei X, Wu T, Chen C., IEEE Trans Cybern 44(10), 2014
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Visual words assignment via information-theoretic manifold embedding.
Deng Y, Li Y, Qian Y, Ji X, Dai Q., IEEE Trans Cybern 44(10), 2014
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Sparse alignment for robust tensor learning.
Lai Z, Wong WK, Xu Y, Zhao C, Sun M., IEEE Trans Neural Netw Learn Syst 25(10), 2014
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Bipart: Learning Block Structure for Activity Detection.
Mu Y, Lo HZ, Ding W, Amaral K, Crouter SE., IEEE Trans Knowl Data Eng 26(10), 2014
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Subspace learning of dynamics on a shape manifold: a generative modeling approach.
Yi S, Krim H., IEEE Trans Image Process 23(11), 2014
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Discriminant locality preserving projections based on L1-norm maximization.
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A Minimax Framework for Classification with Applications to Images and High Dimensional Data.
Cheng Q, Zhou H, Cheng J, Li H., IEEE Trans Pattern Anal Mach Intell 36(11), 2014
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Single-image super-resolution via linear mapping of interpolated self-examples.
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Liu Y, Liu Y, Chan KC, Hua KA., IEEE Trans Neural Netw Learn Syst 25(12), 2014
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Real-time monitoring of high-intensity focused ultrasound thermal therapy using the manifold learning method.
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Correlated spatio-temporal data collection in wireless sensor networks based on low rank matrix approximation and optimized node sampling.
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An Explicit Nonlinear Mapping for Manifold Learning.
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M-Isomap: Orthogonal Constrained Marginal Isomap for Nonlinear Dimensionality Reduction.
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Human detection in images via piecewise linear support vector machines.
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Exponential local discriminant embedding and its application to face recognition.
Dornaika F, Bosaghzadeh A., IEEE Trans Cybern 43(3), 2013
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The kernel semi-least squares method for sparse distance approximation.
Epstein S, Betke M., Neural Comput 25(2), 2013
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Correspondence map-aided neighbor embedding for image intra prediction.
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Learning smooth pattern transformation manifolds.
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Dimensionality reduction for microarray data using local mean based discriminant analysis.
Cui Y, Zheng CH, Yang J., Biotechnol Lett 35(3), 2013
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Manifold-based feature point matching for multi-modal image registration.
Hu L, Wang M, Song Z., Int J Med Robot 9(1), 2013
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Multi-kernel graph embedding for detection, Gleason grading of prostate cancer via MRI/MRS.
Tiwari P, Kurhanewicz J, Madabhushi A., Med Image Anal 17(2), 2013
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Discriminative multimanifold analysis for face recognition from a single training sample per person.
Lu J, Tan YP, Wang G., IEEE Trans Pattern Anal Mach Intell 35(1), 2013
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The virtual brain integrates computational modeling and multimodal neuroimaging.
Ritter P, Schirner M, McIntosh AR, Jirsa VK., Brain Connect 3(2), 2013
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A linear optimal transportation framework for quantifying and visualizing variations in sets of images.
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Large deformation image classification using generalized locality-constrained linear coding.
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Local coordinates alignment with global preservation for dimensionality reduction.
Chen J, Ma Z, Liu Y., IEEE Trans Neural Netw Learn Syst 24(1), 2013
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Zhang J, Xie Z, Li SZ., IEEE Trans Neural Netw Learn Syst 24(1), 2013
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Discriminant subspace learning constrained by locally statistical uncorrelation for face recognition.
Chen Y, Zheng WS, Xu XH, Lai JH., Neural Netw 42(), 2013
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Object matching using a locally affine invariant and linear programming techniques.
Li H, Huang X, He L., IEEE Trans Pattern Anal Mach Intell 35(2), 2013
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Categorizing dynamic textures using a bag of dynamical systems.
Ravichandran A, Chaudhry R, Vidal R., IEEE Trans Pattern Anal Mach Intell 35(2), 2013
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Visualization of SNPs with t-SNE.
Platzer A., PLoS One 8(2), 2013
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Stable orthogonal local discriminant embedding for linear dimensionality reduction.
Gao Q, Ma J, Zhang H, Gao X, Liu Y., IEEE Trans Image Process 22(7), 2013
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Estimating the 4D respiratory lung motion by spatiotemporal registration and super-resolution image reconstruction.
Wu G, Wang Q, Lian J, Shen D., Med Phys 40(3), 2013
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Hierarchical Feature Extraction With Local Neural Response for Image Recognition.
Li H, Wei Y, Li L, Chen CL., IEEE Trans Cybern 43(2), 2013
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Grassmannian regularized structured multi-view embedding for image classification.
Wang X, Bian W, Tao D., IEEE Trans Image Process 22(7), 2013
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Online support vector machine based on convex hull vertices selection.
Wang D, Qiao H, Zhang B, Wang M., IEEE Trans Neural Netw Learn Syst 24(4), 2013
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Identifying individuals with antisocial personality disorder using resting-state FMRI.
Tang Y, Jiang W, Liao J, Wang W, Luo A., PLoS One 8(4), 2013
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The scale analysis of number mapping onto space: manual estimation study.
Karolis V., Q J Exp Psychol (Hove) 66(12), 2013
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Spine segmentation in medical images using manifold embeddings and higher-order MRFs.
Kadoury S, Labelle H, Paragios N., IEEE Trans Med Imaging 32(7), 2013
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Schroedinger Eigenmaps for the analysis of biomedical data.
Czaja W, Ehler M., IEEE Trans Pattern Anal Mach Intell 35(5), 2013
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Resolution enhancement of lung 4D-CT data using multiscale interphase iterative nonlocal means.
Zhang Y, Yap PT, Wu G, Feng Q, Lian J, Chen W, Shen D., Med Phys 40(5), 2013
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Automatic assessment of regional and global wall motion abnormalities in echocardiography images by nonlinear dimensionality reduction.
Shalbaf A, Behnam H, Alizade-Sani Z, Shojaifard M., Med Phys 40(5), 2013
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Evaluation of Dimensionality-reduction Methods from Peptide Folding-unfolding Simulations.
Duan M, Fan J, Li M, Han L, Huo S., J Chem Theory Comput 9(5), 2013
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New insights into the folding of a β-sheet miniprotein in a reduced space of collective hydrogen bond variables: application to a hydrodynamic analysis of the folding flow.
Kalgin IV, Caflisch A, Chekmarev SF, Karplus M., J Phys Chem B 117(20), 2013
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Local structure-based image decomposition for feature extraction with applications to face recognition.
Qian J, Yang J, Xu Y., IEEE Trans Image Process 22(9), 2013
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Robust kernel representation with statistical local features for face recognition.
Yang M, Zhang L, Shiu SC, Zhang D., IEEE Trans Neural Netw Learn Syst 24(6), 2013
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Condensing the omics fog of microbial communities.
Muller EE, Glaab E, May P, Vlassis N, Wilmes P., Trends Microbiol 21(7), 2013
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Fast discriminative stochastic neighbor embedding analysis.
Zheng J, Qiu H, Xu X, Wang W, Huang Q., Comput Math Methods Med 2013(), 2013
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Locally linear embedding (LLE) for MRI based Alzheimer's disease classification.
Liu X, Tosun D, Weiner MW, Schuff N, Alzheimer's Disease Neuroimaging Initiative., Neuroimage 83(), 2013
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Learning and prospective recall of noisy spike pattern episodes.
Dockendorf K, Srinivasa N., Front Comput Neurosci 7(), 2013
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Explicit shape descriptors: novel morphologic features for histopathology classification.
Sparks R, Madabhushi A., Med Image Anal 17(8), 2013
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Low-rank matrix approximation with manifold regularization.
Zhang Z, Zhao K., IEEE Trans Pattern Anal Mach Intell 35(7), 2013
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Improving the classification accuracy for IR spectroscopic diagnosis of stomach and colon malignancy using non-linear spectral feature extraction methods.
Lee S, Kim K, Lee H, Jun CH, Chung H, Park JJ., Analyst 138(14), 2013
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Dissimilarity sparsity-preserving projections in feature extraction for visual recognition.
Xiang F, Wang Z, Yuan X., Appl Opt 52(20), 2013
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Supervised preserving projection for learning scene information based on time-of-flight imaging sensor.
Jiang Y, Liu Y, Lei Y, Wang Q., Appl Opt 52(21), 2013
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Rank preserving sparse learning for Kinect based scene classification.
Tao D, Jin L, Yang Z, Li X., IEEE Trans Cybern 43(5), 2013
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Seismic target classification using a wavelet packet manifold in unattended ground sensors systems.
Huang J, Zhou Q, Zhang X, Song E, Li B, Yuan X., Sensors (Basel) 13(7), 2013
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General subspace learning with corrupted training data via graph embedding.
Bao BK, Liu G, Hong R, Yan S, Xu C., IEEE Trans Image Process 22(11), 2013
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Representation learning: a review and new perspectives.
Bengio Y, Courville A, Vincent P., IEEE Trans Pattern Anal Mach Intell 35(8), 2013
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Dictionary learning-based subspace structure identification in spectral clustering.
Liping Jing, Ng MK, Tieyong Zeng., IEEE Trans Neural Netw Learn Syst 24(8), 2013
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Ranking graph embedding for learning to rerank.
Yanwei Pang, Zhong Ji, Peiguang Jing, Xuelong Li., IEEE Trans Neural Netw Learn Syst 24(8), 2013
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Using manifold learning for atlas selection in multi-atlas segmentation.
Hoang Duc AK, Modat M, Leung KK, Cardoso MJ, Barnes J, Kadir T, Ourselin S, Alzheimer’s Disease Neuroimaging Initiative., PLoS One 8(8), 2013
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Pairwise sparsity preserving embedding for unsupervised subspace learning and classification.
Zhang Z, Yan S, Zhao M., IEEE Trans Image Process 22(12), 2013
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Analysis and classification of collective behavior using generative modeling and nonlinear manifold learning.
Butail S, Bollt EM, Porfiri M., J Theor Biol 336(), 2013
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Statistical Shape Model for Manifold Regularization: Gleason grading of prostate histology.
Sparks R, Madabhushi A., Comput Vis Image Underst 117(9), 2013
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Transductive face sketch-photo synthesis.
Wang N, Tao D, Gao X, Li X, Li J., IEEE Trans Neural Netw Learn Syst 24(9), 2013
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Semisupervised kernel marginal Fisher analysis for face recognition.
Wang Z, Sun X, Sun L, Huang Y., ScientificWorldJournal 2013(), 2013
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Multi-scale locality-constrained spatiotemporal coding for local feature based human action recognition.
Wang B, Liu Y, Wang W, Xu W, Zhang M., ScientificWorldJournal 2013(), 2013
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Molecular recognition of DNA by ligands: roughness and complexity of the free energy profile.
Zheng W, Vargiu AV, Rohrdanz MA, Carloni P, Clementi C., J Chem Phys 139(14), 2013
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Mean vector component analysis for visualization and clustering of nonnegative data.
Jenssen R., IEEE Trans Neural Netw Learn Syst 24(10), 2013
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Automated induction of heterogeneous proximity measures for supervised spectral embedding.
Rodriguez-Martinez E, Mu T, Jiang J, Goulermas JY., IEEE Trans Neural Netw Learn Syst 24(10), 2013
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Single image super-resolution with multiscale similarity learning.
Zhang K, Gao X, Tao D, Li X., IEEE Trans Neural Netw Learn Syst 24(10), 2013
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Spectral multidimensional scaling.
Aflalo Y, Kimmel R., Proc Natl Acad Sci U S A 110(45), 2013
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Efficient and rapid derivation of primitive neural stem cells and generation of brain subtype neurons from human pluripotent stem cells.
Yan Y, Shin S, Jha BS, Liu Q, Sheng J, Li F, Zhan M, Davis J, Bharti K, Zeng X, Rao M, Malik N, Vemuri MC., Stem Cells Transl Med 2(11), 2013
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Making sense of big data.
Wolfe PJ., Proc Natl Acad Sci U S A 110(45), 2013
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Nonlinear intrinsic variables and state reconstruction in multiscale simulations.
Dsilva CJ, Talmon R, Rabin N, Coifman RR, Kevrekidis IG., J Chem Phys 139(18), 2013
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A spatiotemporal coding mechanism for background-invariant odor recognition.
Saha D, Leong K, Li C, Peterson S, Siegel G, Raman B., Nat Neurosci 16(12), 2013
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Global actions of nicotine on the striatal microcircuit.
Plata V, Duhne M, Pérez-Ortega J, Hernández-Martinez R, Rueda-Orozco P, Galarraga E, Drucker-Colín R, Bargas J., Front Syst Neurosci 7(), 2013
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Encoding of mixtures in a simple olfactory system.
Shen K, Tootoonian S, Laurent G., Neuron 80(5), 2013
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Nonlinear dynamic model for visual object tracking on Grassmann manifolds with partial occlusion handling.
Khan ZH, Gu IY., IEEE Trans Cybern 43(6), 2013
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Image set based face recognition using self-regularized non-negative coding and adaptive distance metric learning.
Mian A, Hu Y, Hartley R, Owens R., IEEE Trans Image Process 22(12), 2013
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Modeling and enhanced sampling of molecular systems with smooth and nonlinear data-driven collective variables.
Hashemian B, Millán D, Arroyo M., J Chem Phys 139(21), 2013
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Multiview locally linear embedding for effective medical image retrieval.
Shen H, Tao D, Ma D., PLoS One 8(12), 2013
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Dual-force ISOMAP: a new relevance feedback method for medical image retrieval.
Shen H, Tao D, Ma D., PLoS One 8(12), 2013
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Entropy and Laplacian images: structural representations for multi-modal registration.
Wachinger C, Navab N., Med Image Anal 16(1), 2012
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Angular Embedding: A Robust Quadratic Criterion.
Yu SX., IEEE Trans Pattern Anal Mach Intell 34(1), 2012
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Breast tissue image classification based on Semi-supervised Locality Discriminant Projection with Kernels.
Li JB, Yu Y, Yang ZM, Tang LL., J Med Syst 36(5), 2012
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Spatially optimized data-level fusion of texture and shape for face recognition.
Al-Osaimi FR, Bennamoun M, Mian A., IEEE Trans Image Process 21(2), 2012
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Detection and analysis of transitional activity in manifold space.
Ali R, Atallah L, Lo B, Yang GZ., IEEE Trans Inf Technol Biomed 16(1), 2012
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Classification of three-dimensional thoracic deformities in adolescent idiopathic scoliosis from a multivariate analysis.
Kadoury S, Labelle H., Eur Spine J 21(1), 2012
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Gait recognition: highly unique dynamic plantar pressure patterns among 104 individuals.
Pataky TC, Mu T, Bosch K, Rosenbaum D, Goulermas JY., J R Soc Interface 9(69), 2012
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Multimodal wavelet embedding representation for data combination (MaWERiC): integrating magnetic resonance imaging and spectroscopy for prostate cancer detection.
Tiwari P, Viswanath S, Kurhanewicz J, Sridhar A, Madabhushi A., NMR Biomed 25(4), 2012
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Generalized biased discriminant analysis for content-based image retrieval.
Zhang L, Wang L, Lin W., IEEE Trans Syst Man Cybern B Cybern 42(1), 2012
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Image prediction based on neighbor-embedding methods.
Türkan M, Guillemot C., IEEE Trans Image Process 21(4), 2012
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Endoscopic video manifolds for targeted optical biopsy.
Atasoy S, Mateus D, Meining A, Yang GZ, Navab N., IEEE Trans Med Imaging 31(3), 2012
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Initialization independent clustering with actively self-training method.
Nie F, Xu D, Li X., IEEE Trans Syst Man Cybern B Cybern 42(1), 2012
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Use of Self-Organizing Maps for Balanced Scorecard analysis to monitor the performance of dialysis clinic chains.
Cattinelli I, Bolzoni E, Barbieri C, Mari F, Martin-Guerrero JD, Soria-Olivas E, Martinez-Martinez JM, Gomez-Sanchis J, Amato C, Stopper A, Gatti E., Health Care Manag Sci 15(1), 2012
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Semisupervised biased maximum margin analysis for interactive image retrieval.
Zhang L, Wang L, Lin W., IEEE Trans Image Process 21(4), 2012
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Manifold learning for image-based breathing gating in ultrasound and MRI.
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Visualizing Dynamic Data with Maps.
Mashima D, Kobourov SG, Hu Y., IEEE Trans Vis Comput Graph 18(9), 2012
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Nonlinear dimensionality reduction combining MR imaging with non-imaging information.
Wolz R, Aljabar P, Hajnal JV, Lötjönen J, Rueckert D, Alzheimer’s Disease Neuroimaging Initiative., Med Image Anal 16(4), 2012
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Manifold learning for human population structure studies.
Siu H, Jin L, Xiong M., PLoS One 7(1), 2012
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Adaptive manifold learning.
Zhang Z, Wang J, Zha H., IEEE Trans Pattern Anal Mach Intell 34(2), 2012
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Joint learning for single-image super-resolution via a coupled constraint.
Gao X, Zhang K, Tao D, Li X., IEEE Trans Image Process 21(2), 2012
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Multiview face recognition: from TensorFace to V-TensorFace and K-TensorFace.
Tian C, Fan G, Gao X, Tian Q., IEEE Trans Syst Man Cybern B Cybern 42(2), 2012
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Machine learning and radiology.
Wang S, Summers RM., Med Image Anal 16(5), 2012
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Dramatic reduction of dimensionality in large biochemical networks owing to strong pair correlations.
Dworkin M, Mukherjee S, Jayaprakash C, Das J., J R Soc Interface 9(73), 2012
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Texture classification from random features.
Liu L, Fieguth PW., IEEE Trans Pattern Anal Mach Intell 34(3), 2012
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Semi-supervised dimension reduction using trace ratio criterion.
Huang Y, Xu D, Nie F., IEEE Trans Neural Netw Learn Syst 23(3), 2012
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Combining multiple approaches for gene microarray classification.
Nanni L, Brahnam S, Lumini A., Bioinformatics 28(8), 2012
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Image super-resolution with sparse neighbor embedding.
Gao X, Zhang K, Tao D, Li X., IEEE Trans Image Process 21(7), 2012
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Histology image analysis for carcinoma detection and grading.
He L, Long LR, Antani S, Thoma GR., Comput Methods Programs Biomed 107(3), 2012
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Shared Kernel Information Embedding for discriminative inference.
Memisevic R, Sigal L, Fleet DJ., IEEE Trans Pattern Anal Mach Intell 34(4), 2012
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A multimedia retrieval framework based on semi-supervised ranking and relevance feedback.
Yang Y, Nie F, Xu D, Luo J, Zhuang Y, Pan Y., IEEE Trans Pattern Anal Mach Intell 34(4), 2012
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Comparative analysis of nonlinear dimensionality reduction techniques for breast MRI segmentation.
Akhbardeh A, Jacobs MA., Med Phys 39(4), 2012
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Coupled kernel embedding for low resolution face image recognition.
Ren CX, Dai DQ, Yan H., IEEE Trans Image Process 21(8), 2012
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Conjunctive patches subspace learning with side information for collaborative image retrieval.
Zhang L, Wang L, Lin W., IEEE Trans Image Process 21(8), 2012
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Gene classification using parameter-free semi-supervised manifold learning.
Huang H, Feng H., IEEE/ACM Trans Comput Biol Bioinform 9(3), 2012
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Rotation-invariant nonrigid point set matching in cluttered scenes.
Lian W, Zhang L, Zhang D., IEEE Trans Image Process 21(5), 2012
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Three-dimensional face reconstruction from a single image by a coupled RBF network.
Song M, Tao D, Huang X, Chen C, Bu J., IEEE Trans Image Process 21(5), 2012
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Hybrid dimensionality reduction method based on support vector machine and independent component analysis.
Moon S, Qi H., IEEE Trans Neural Netw Learn Syst 23(5), 2012
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Assessing and predicting protein interactions by combining manifold embedding with multiple information integration.
Lei YK, You ZH, Ji Z, Zhu L, Huang DS., BMC Bioinformatics 13 Suppl 7(), 2012
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Learning the dynamics of objects by optimal functional interpolation.
Ahn JH, Kim IY., Neural Comput 24(9), 2012
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Supervised latent linear Gaussian process latent variable model for dimensionality reduction.
Jiang X, Gao J, Wang T, Zheng L., IEEE Trans Syst Man Cybern B Cybern 42(6), 2012
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A least-squares framework for Component Analysis.
De la Torre F., IEEE Trans Pattern Anal Mach Intell 34(6), 2012
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The symmetries of image formation by scattering. I. Theoretical framework.
Giannakis D, Schwander P, Ourmazd A., Opt Express 20(12), 2012
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The symmetries of image formation by scattering. II. Applications.
Schwander P, Giannakis D, Yoon CH, Ourmazd A., Opt Express 20(12), 2012
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Describing high-dimensional dynamics with low-dimensional piecewise affine models: applications to renewable energy.
Hirata Y, Aihara K., Chaos 22(2), 2012
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Hierarchical patch-based sparse representation--a new approach for resolution enhancement of 4D-CT lung data.
Zhang Y, Wu G, Yap PT, Feng Q, Lian J, Chen W, Shen D., IEEE Trans Med Imaging 31(11), 2012
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Temporal microstructure of cortical networks (TMCN) underlying task-related differences.
Banerjee A, Pillai AS, Sperling JR, Smith JF, Horwitz B., Neuroimage 62(3), 2012
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Comprehensive common spatial patterns with temporal structure information of EEG data: minimizing nontask related EEG component.
Wang H, Xu D., IEEE Trans Biomed Eng 59(9), 2012
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Protein surface representation and analysis by dimension reduction.
Yang H, Qureshi R, Sacan A., Proteome Sci 10 Suppl 1(), 2012
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Manifold-manifold distance and its application to face recognition with image sets.
Wang R, Shan S, Chen X, Dai Q, Gao W., IEEE Trans Image Process 21(10), 2012
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Spline regression hashing for fast image search.
Liu Y, Wu F, Yang Y, Zhuang Y, Hauptmann AG., IEEE Trans Image Process 21(10), 2012
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Multimodal graph-based reranking for web image search.
Wang M, Li H, Tao D, Lu K, Wu X., IEEE Trans Image Process 21(11), 2012
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Evaluation of hepatic tumor response to yttrium-90 radioembolization therapy using texture signatures generated from contrast-enhanced CT images.
Gensure RH, Foran DJ, Lee VM, Gendel VM, Jabbour SK, Carpizo DR, Nosher JL, Yang L., Acad Radiol 19(10), 2012
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Constrained manifold learning for the characterization of pathological deviations from normality.
Duchateau N, De Craene M, Piella G, Frangi AF., Med Image Anal 16(8), 2012
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Nonlinearities and adaptation of color vision from sequential principal curves analysis.
Laparra V, Jiménez S, Camps-Valls G, Malo J., Neural Comput 24(10), 2012
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Unsupervised image matching based on manifold alignment.
Pei Y, Huang F, Shi F, Zha H., IEEE Trans Pattern Anal Mach Intell 34(8), 2012
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Vector Diffusion Maps and the Connection Laplacian.
Singer A, Wu HT., Commun Pure Appl Math 65(8), 2012
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Adaptive data embedding framework for multiclass classification.
Mu T, Jiang J, Wang Y, Goulermas JY., IEEE Trans Neural Netw Learn Syst 23(8), 2012
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New robust face recognition methods based on linear regression.
Mi JX, Liu JX, Wen J., PLoS One 7(8), 2012
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Identify schizophrenia using resting-state functional connectivity: an exploratory research and analysis.
Tang Y, Wang L, Cao F, Tan L., Biomed Eng Online 11(), 2012
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GPU-FS-kNN: a software tool for fast and scalable kNN computation using GPUs.
Arefin AS, Riveros C, Berretta R, Moscato P., PLoS One 7(8), 2012
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Decoding lifespan changes of the human brain using resting-state functional connectivity MRI.
Wang L, Su L, Shen H, Hu D., PLoS One 7(8), 2012
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A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst.
Buettner F, Theis FJ., Bioinformatics 28(18), 2012
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Peripapillary atrophy detection by sparse biologically inspired feature manifold.
Cheng J, Tao D, Liu J, Wong DW, Tan NM, Wong TY, Saw SM., IEEE Trans Med Imaging 31(12), 2012
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Increased cortical-limbic anatomical network connectivity in major depression revealed by diffusion tensor imaging.
Fang P, Zeng LL, Shen H, Wang L, Li B, Liu L, Hu D., PLoS One 7(9), 2012
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Marginal semi-supervised sub-manifold projections with informative constraints for dimensionality reduction and recognition.
Zhang Z, Zhao M, Chow TW., Neural Netw 36(), 2012
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Scaling up minimum enclosing ball with total soft margin for training on large datasets.
Hu W, Chung FL, Wang S, Ying W., Neural Netw 36(), 2012
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Locally learning biomedical data using diffusion frames.
Ehler M, Filbir F, Mhaskar HN., J Comput Biol 19(11), 2012
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Embedding retrieval of articulated geometry models.
Tam GK, Lau RW., IEEE Trans Pattern Anal Mach Intell 34(11), 2012
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Proximity-based frameworks for generating embeddings from multi-output data.
Mu T, Goulermas JY, Tsujii J, Ananiadou S., IEEE Trans Pattern Anal Mach Intell 34(11), 2012
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Steady-state indicators of the intracranial pressure dynamic system using geodesic distance of the ICP pulse waveform.
Hu X, Gonzalez N, Bergsneider M., Physiol Meas 33(12), 2012
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Subspace learning from image gradient orientations.
Tzimiropoulos G, Zafeiriou S, Pantic M., IEEE Trans Pattern Anal Mach Intell 34(12), 2012
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Sparse approximation to the eigensubspace for discrimination.
Lai Z, Wong WK, Jin Z, Yang J, Xu Y., IEEE Trans Neural Netw Learn Syst 23(12), 2012
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Visual Steering and Verification of Mass Spectrometry Data Factorization in Air Quality Research.
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Automatically clustering large-scale miRNA sequences: methods and experiments.
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Graph-preserving sparse nonnegative matrix factorization with application to facial expression recognition.
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Learning similarity with multikernel method.
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Face recognition by exploring information jointly in space, scale and orientation.
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From local pixel structure to global image super-resolution: a new face hallucination framework.
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A continuous mapping of sleep states through association of EEG with a mesoscale cortical model.
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Semi-supervised cluster analysis of imaging data.
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Modeling multivariate time series on manifolds with skew radial basis functions.
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Graph regularized sparse coding for image representation.
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Super-resolution method for face recognition using nonlinear mappings on coherent features.
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Application of multidimensional scaling to quantify shape in Alzheimer's disease and its correlation with Mini Mental State Examination: a feasibility study.
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Semisupervised dimensionality reduction and classification through virtual label regression.
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A Physics-Based Analysis of Image Appearance Models.
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Graph Regularized Nonnegative Matrix Factorization for Data Representation.
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Learning a 3D Human Pose Distance Metric from Geometric Pose Descriptor.
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Principal curve algorithms for partitioning high-dimensional data spaces.
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New dimensionality reduction methods for the representation of high dimensional 'omics' data.
Bécavin C, Benecke A., Expert Rev Mol Diagn 11(1), 2011
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Clustering gene expression data with a penalized graph-based metric.
Bayá AE, Granitto PM., BMC Bioinformatics 12(), 2011
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Locally synchronized astrocytes.
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Semisupervised learning using negative labels.
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MDS-based multiresolution nonlinear dimensionality reduction model for color image segmentation.
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Locally Linear Diffeomorphic Metric Embedding (LLDME) for surface-based anatomical shape modeling.
Yang X, Goh A, Qiu A., Neuroimage 56(1), 2011
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Learning linear discriminant projections for dimensionality reduction of image descriptors.
Cai H, Mikolajczyk K, Matas J., IEEE Trans Pattern Anal Mach Intell 33(2), 2011
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Dimensionality of color space in natural images.
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Active Learning Based on Locally Linear Reconstruction.
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Perception-based visualization of manifold-valued medical images using distance-preserving dimensionality reduction.
Hamarneh G, McIntosh C, Drew MS., IEEE Trans Med Imaging 30(7), 2011
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m-SNE: Multiview Stochastic Neighbor Embedding.
Bo Xie, Yang Mu, Dacheng Tao, Kaiqi Huang., IEEE Trans Syst Man Cybern B Cybern 41(4), 2011
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Beautification of Design Sketches Using Trainable Stroke Clustering and Curve Fitting.
Orbay G, Kara LB., IEEE Trans Vis Comput Graph 17(5), 2011
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Automatic inference of articulated spine models in CT images using high-order Markov Random Fields.
Kadoury S, Labelle H, Paragios N., Med Image Anal 15(4), 2011
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Learning adaptive metric for robust visual tracking.
Jiang N, Liu W, Wu Y., IEEE Trans Image Process 20(8), 2011
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Real-time image-based B-mode ultrasound image simulation of needles using tensor-product interpolation.
Zhu M, Salcudean SE., IEEE Trans Med Imaging 30(7), 2011
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Learning a family of detectors via multiplicative kernels.
Yuan Q, Thangali A, Ablavsky V, Sclaroff S., IEEE Trans Pattern Anal Mach Intell 33(3), 2011
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Determination of reaction coordinates via locally scaled diffusion map.
Rohrdanz MA, Zheng W, Maggioni M, Clementi C., J Chem Phys 134(12), 2011
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Maximal Linear Embedding for Dimensionality Reduction.
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Online dimensionality reduction using competitive learning and Radial Basis Function network.
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A Variance Minimization Criterion to Feature Selection Using Laplacian Regularization.
He X, Ji M, Zhang C, Bao H., IEEE Trans Pattern Anal Mach Intell 33(10), 2011
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Central subspace dimensionality reduction using covariance operators.
Kim M, Pavlovic V., IEEE Trans Pattern Anal Mach Intell 33(4), 2011
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Integrating diffusion maps with umbrella sampling: application to alanine dipeptide.
Ferguson AL, Panagiotopoulos AZ, Debenedetti PG, Kevrekidis IG., J Chem Phys 134(13), 2011
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Hallucinating face in the DCT domain.
Zhang W, Cham WK., IEEE Trans Image Process 20(10), 2011
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Example-driven manifold priors for image deconvolution.
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Morphological Classification: Application to Cardiac MRI of Tetralogy of Fallot.
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Reconstructing 3D Face Model with Associated Expression Deformation from a Single Face Image via Constructing a Low-Dimensional Expression Deformation Manifold.
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Manifold Learning by Graduated Optimization.
Gashler M, Ventura D, Martinez T., IEEE Trans Syst Man Cybern B Cybern 41(6), 2011
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Gait-based gender classification using mixed conditional random field.
Hu M, Wang Y, Zhang Z, Zhang D., IEEE Trans Syst Man Cybern B Cybern 41(5), 2011
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Human object inpainting using manifold learning-based posture sequence estimation.
Ling CH, Liang YM, Lin CW, Chen YS, Liao HY., IEEE Trans Image Process 20(11), 2011
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Complex object correspondence construction in two-dimensional animation.
Yu J, Liu D, Tao D, Seah HS., IEEE Trans Image Process 20(11), 2011
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Multiple kernel learning for dimensionality reduction.
Lin YY, Liu TL, Fuh CS., IEEE Trans Pattern Anal Mach Intell 33(6), 2011
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Face recognition using nearest feature space embedding.
Chen YN, Han CC, Wang CT, Fan KC., IEEE Trans Pattern Anal Mach Intell 33(6), 2011
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Regression-Based Label Fusion for Multi-Atlas Segmentation.
Wang H, Suh JW, Das S, Pluta J, Altinay M, Yushkevich P., Conf Comput Vis Pattern Recognit Workshops (), 2011
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Invariant object recognition and pose estimation with slow feature analysis.
Franzius M, Wilbert N, Wiskott L., Neural Comput 23(9), 2011
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Spectral clustering on multiple manifolds.
Wang Y, Jiang Y, Wu Y, Zhou ZH., IEEE Trans Neural Netw 22(7), 2011
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PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome.
Zhang J, Mamlouk AM, Martinetz T, Chang S, Wang J, Hilgenfeld R., BMC Bioinformatics 12(), 2011
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Non-negative patch alignment framework.
Guan N, Tao D, Luo Z, Yuan B., IEEE Trans Neural Netw 22(8), 2011
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Orientability and Diffusion Maps.
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From the Cover: Simplifying the representation of complex free-energy landscapes using sketch-map.
Ceriotti M, Tribello GA, Parrinello M., Proc Natl Acad Sci U S A 108(32), 2011
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A combined manifold learning analysis of shape and appearance to characterize neonatal brain development.
Aljabar P, Wolz R, Srinivasan L, Counsell SJ, Rutherford MA, Edwards AD, Hajnal JV, Rueckert D., IEEE Trans Med Imaging 30(12), 2011
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Prototypes for content-based image retrieval in clinical practice.
Depeursinge A, Fischer B, Müller H, Deserno TM., Open Med Inform J 5(suppl 1), 2011
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Morphological appearance manifolds for group-wise morphometric analysis.
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Unsupervised large margin discriminative projection.
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The social network (of protein conformations).
Chodera JD, Pande VS., Proc Natl Acad Sci U S A 108(32), 2011
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Inferring a transcriptional regulatory network from gene expression data using nonlinear manifold embedding.
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A learning-style theory for understanding autistic behaviors.
Qian N, Lipkin RM., Front Hum Neurosci 5(), 2011
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Bag-of-features based medical image retrieval via multiple assignment and visual words weighting.
Wang J, Li Y, Zhang Y, Wang C, Xie H, Chen G, Gao X., IEEE Trans Med Imaging 30(11), 2011
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Automatic defect detection for TFT-LCD array process using quasiconformal kernel support vector data description.
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Tree preserving embedding.
Shieh AD, Hashimoto TB, Airoldi EM., Proc Natl Acad Sci U S A 108(41), 2011
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A user-assisted approach to visualizing multidimensional images.
Lawrence J, Arietta S, Kazhdan M, Lepage D, O'Hagan C., IEEE Trans Vis Comput Graph 17(10), 2011
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Regression reformulations of LLE and LTSA with locally linear transformation.
Xiang S, Nie F, Pan C, Zhang C., IEEE Trans Syst Man Cybern B Cybern 41(5), 2011
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Dopaminergic modulation of the striatal microcircuit: receptor-specific configuration of cell assemblies.
Carrillo-Reid L, Hernández-López S, Tapia D, Galarraga E, Bargas J., J Neurosci 31(42), 2011
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Facial expression recognition based on local binary patterns and kernel discriminant isomap.
Zhao X, Zhang S., Sensors (Basel) 11(10), 2011
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An activation force-based affinity measure for analyzing complex networks.
Guo J, Guo H, Wang Z., Sci Rep 1(), 2011
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Quantitative analysis of nonlinear embedding.
Zhang J, Wang Q, He L, Zhou ZH., IEEE Trans Neural Netw 22(12), 2011
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An interactive local flattening operator to support digital investigations on artwork surfaces.
Pietroni N, Massimiliano C, Cignoni P, Scopigno R., IEEE Trans Vis Comput Graph 17(12), 2011
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Local Affine Multidimensional Projection.
Joia P, Paulovich FV, Coimbra D, Cuminato JA, Nonato LG., IEEE Trans Vis Comput Graph 17(12), 2011
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Distance approximating dimension reduction of Riemannian manifolds.
Chen C, Zhang J, Fleischer R., IEEE Trans Syst Man Cybern B Cybern 40(1), 2010
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Uncovering mental representations with Markov chain Monte Carlo.
Sanborn AN, Griffiths TL, Shiffrin RM., Cogn Psychol 60(2), 2010
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Discriminative orthogonal neighborhood-preserving projections for classification.
Zhang T, Huang K, Li X, Yang J, Tao D., IEEE Trans Syst Man Cybern B Cybern 40(1), 2010
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Segmentation of the left ventricle from cardiac MR images using a subject-specific dynamical model.
Zhu Y, Papademetris X, Sinusas AJ, Duncan JS., IEEE Trans Med Imaging 29(3), 2010
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Biased discriminant euclidean embedding for content-based image retrieval.
Bian W, Tao D., IEEE Trans Image Process 19(2), 2010
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Evolutionary cross-domain discriminative Hessian Eigenmaps.
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Active reranking for web image search.
Tian X, Tao D, Hua XS, Wu X., IEEE Trans Image Process 19(3), 2010
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Learning an intrinsic-variable preserving manifold for dynamic visual tracking.
Qiao H, Zhang P, Zhang B, Zheng S., IEEE Trans Syst Man Cybern B Cybern 40(3), 2010
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Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI.
Shen H, Wang L, Liu Y, Hu D., Neuroimage 49(4), 2010
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An effective method of pruning support vector machine classifiers.
Liang X., IEEE Trans Neural Netw 21(1), 2010
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Feature fusion using locally linear embedding for classification.
Sun BY, Zhang XM, Li J, Mao XM., IEEE Trans Neural Netw 21(1), 2010
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Joint learning of labels and distance metric.
Liu B, Wang M, Hong R, Zha Z, Hua XS., IEEE Trans Syst Man Cybern B Cybern 40(3), 2010
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Learning with l1-graph for image analysis.
Cheng B, Yang J, Yan S, Fu Y, Huang TS., IEEE Trans Image Process 19(4), 2010
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Local matrix learning in clustering and applications for manifold visualization.
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Biologically inspired feature manifold for scene classification.
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Accurate image search using the contextual dissimilarity measure.
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Multi-Channel Transfer Function with Dimensionality Reduction.
Kim HS, Schulze JP, Cone AC, Sosinsky GE, Martone ME., Proc SPIE Int Soc Opt Eng 7530(), 2010
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Clustering algorithms in biomedical research: a review.
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The Geometry of Visual Perception: Retinotopic and Non-retinotopic Representations in the Human Visual System.
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Predicting human immunodeficiency virus protease cleavage sites in nonlinear projection space.
Li X, Hu H, Shu L., Mol Cell Biochem 339(1-2), 2010
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Fusing local patterns of Gabor magnitude and phase for face recognition.
Xie S, Shan S, Chen X, Chen J., IEEE Trans Image Process 19(5), 2010
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Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides.
Stamati H, Clementi C, Kavraki LE., Proteins 78(2), 2010
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Multiway spectral clustering with out-of-sample extensions through weighted kernel PCA.
Alzate C, Suykens JA., IEEE Trans Pattern Anal Mach Intell 32(2), 2010
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Image inpainting by patch propagation using patch sparsity.
Xu Z, Sun J., IEEE Trans Image Process 19(5), 2010
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Penalized preimage learning in kernel principal component analysis.
Zheng WS, Lai J, Yuen PC., IEEE Trans Neural Netw 21(4), 2010
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Multiview spectral embedding.
Xia T, Tao D, Mei T, Zhang Y., IEEE Trans Syst Man Cybern B Cybern 40(6), 2010
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Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing.
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Low-resolution gait recognition.
Zhang J, Pu J, Chen C, Fleischer R., IEEE Trans Syst Man Cybern B Cybern 40(4), 2010
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Flexible manifold embedding: a framework for semi-supervised and unsupervised dimension reduction.
Nie F, Xu D, Tsang IW, Zhang C., IEEE Trans Image Process 19(7), 2010
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Brief sounds evoke prolonged responses in anesthetized ferret auditory cortex.
Campbell RA, Schulz AL, King AJ, Schnupp JW., J Neurophysiol 103(5), 2010
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Dimensionality reduction of fMRI time series data using locally linear embedding.
Mannfolk P, Wirestam R, Nilsson M, Ståhlberg F, Olsrud J., MAGMA 23(5-6), 2010
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Dual gait generative models for human motion estimation from a single camera.
Zhang X, Fan G., IEEE Trans Syst Man Cybern B Cybern 40(4), 2010
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Nearest-neighbor guided evaluation of data reliability and its applications.
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Kernel entropy component analysis.
Jenssen R., IEEE Trans Pattern Anal Mach Intell 32(5), 2010
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Learning context-sensitive shape similarity by graph transduction.
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Reference Free Structure Determination through Eigenvectors of Center of Mass Operators.
Coifman RR, Shkolnisky Y, Sigworth FJ, Singer A., Appl Comput Harmon Anal 28(3), 2010
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A novel Locally Linear Embedding and Wavelet Transform based encoding method for prediction of MHC-II binding affinity.
Liu J, Li QJ, Zhang W., Interdiscip Sci 2(2), 2010
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Derivation of cancer diagnostic and prognostic signatures from gene expression data.
Goodison S, Sun Y, Urquidi V., Bioanalysis 2(5), 2010
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Online prediction of respiratory motion: multidimensional processing with low-dimensional feature learning.
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Live-cell tracking using SIFT features in DIC microscopic videos.
Jiang RM, Crookes D, Luo N, Davidson MW., IEEE Trans Biomed Eng 57(9), 2010
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Image super-resolution via sparse representation.
Yang J, Wright J, Huang TS, Ma Y., IEEE Trans Image Process 19(11), 2010
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Learning the dynamical system behind sensory data.
Lee J, Lee SY., Neural Comput 22(6), 2010
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A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images.
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Topology of cyclo-octane energy landscape.
Martin S, Thompson A, Coutsias EA, Watson JP., J Chem Phys 132(23), 2010
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Assessment of the individual fracture risk of the proximal femur by using statistical appearance models.
Schuler B, Fritscher KD, Kuhn V, Eckstein F, Link TM, Schubert R., Med Phys 37(6), 2010
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Super-sparse principal component analyses for high-throughput genomic data.
Lee D, Lee W, Lee Y, Pawitan Y., BMC Bioinformatics 11(), 2010
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Manifold modeling for brain population analysis.
Gerber S, Tasdizen T, Thomas Fletcher P, Joshi S, Whitaker R, Alzheimers Disease Neuroimaging Initiative (ADNI)., Med Image Anal 14(5), 2010
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TurboPixel segmentation using eigen-images.
Xiang S, Pan C, Nie F, Zhang C., IEEE Trans Image Process 19(11), 2010
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Joint manifolds for data fusion.
Davenport MA, Hegde C, Duarte MF, Baraniuk RG., IEEE Trans Image Process 19(10), 2010
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Estimating view parameters from random projections for Tomography using spherical MDS.
Fang Y, Murugappan S, Ramani K., BMC Med Imaging 10(), 2010
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Massive-training artificial neural network coupled with Laplacian-eigenfunction-based dimensionality reduction for computer-aided detection of polyps in CT colonography.
Suzuki K, Zhang J, Xu J., IEEE Trans Med Imaging 29(11), 2010
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Similarity preserving principal curve: an optimal 1-d feature extractor for data representation.
Sun M, Yang J, Liu C, Yang J., IEEE Trans Neural Netw 21(9), 2010
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Discriminative semi-supervised feature selection via manifold regularization.
Xu Z, King I, Lyu MR, Jin R., IEEE Trans Neural Netw 21(7), 2010
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Global features of neural activity in the olfactory system form a parallel code that predicts olfactory behavior and perception.
Haddad R, Weiss T, Khan R, Nadler B, Mandairon N, Bensafi M, Schneidman E, Sobel N., J Neurosci 30(27), 2010
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Nonnegative principal component analysis for cancer molecular pattern discovery.
Han X., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
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Systematic determination of order parameters for chain dynamics using diffusion maps.
Ferguson AL, Panagiotopoulos AZ, Debenedetti PG, Kevrekidis IG., Proc Natl Acad Sci U S A 107(31), 2010
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Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling.
Sato M, Tsuda K, Wang L, Coller J, Watanabe Y, Glazebrook J, Katagiri F., PLoS Pathog 6(7), 2010
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Automatic detection of end-diastole and end-systole from echocardiography images using manifold learning.
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Dynamics of the Parkinsonian striatal microcircuit: entrainment into a dominant network state.
Jáidar O, Carrillo-Reid L, Hernández A, Drucker-Colín R, Bargas J, Hernández-Cruz A., J Neurosci 30(34), 2010
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Clustered Nyström method for large scale manifold learning and dimension reduction.
Zhang K, Kwok JT., IEEE Trans Neural Netw 21(10), 2010
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Local-learning-based feature selection for high-dimensional data analysis.
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Training-free, generic object detection using locally adaptive regression kernels.
Seo HJ, Milanfar P., IEEE Trans Pattern Anal Mach Intell 32(9), 2010
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Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.
Cannistraci CV, Ravasi T, Montevecchi FM, Ideker T, Alessio M., Bioinformatics 26(18), 2010
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Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets.
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Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.
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Tensor distance based multilinear locality-preserved maximum information embedding.
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Kernelized sorting.
Quadrianto N, Smola AJ, Song L, Tuytelaars T., IEEE Trans Pattern Anal Mach Intell 32(10), 2010
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A fast L(p) spike alignment metric.
Dubbs AJ, Seiler BA, Magnasco MO., Neural Comput 22(11), 2010
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Age synthesis and estimation via faces: a survey.
Fu Y, Guo G, Huang TS., IEEE Trans Pattern Anal Mach Intell 32(11), 2010
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Two-phase mapping for projecting massive data sets.
Paulovich FV, Silva CT, Nonato LG., IEEE Trans Vis Comput Graph 16(6), 2010
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An experimental and computational investigation of spontaneous lasso formation in microcin J25.
Ferguson AL, Zhang S, Dikiy I, Panagiotopoulos AZ, Debenedetti PG, James Link A., Biophys J 99(9), 2010
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Quantum wavepacket ab initio molecular dynamics: generalizations using an extended Lagrangian treatment of diabatic states coupled through multireference electronic structure.
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Stochastic Proximity Embedding: Methods and Applications.
Agrafiotis DK, Xu H, Zhu F, Bandyopadhyay D, Liu P., Mol Inform 29(11), 2010
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Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data.
Bartenhagen C, Klein HU, Ruckert C, Jiang X, Dugas M., BMC Bioinformatics 11(), 2010
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Pattern recognition software and techniques for biological image analysis.
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Encoding Dissimilarity Data for Statistical Model Building.
Wahba G., J Stat Plan Inference 140(12), 2010
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Self-organizing maps: a tool to ascertain taxonomic relatedness based on features derived from 16S rDNA sequence.
Raje DV, Purohit HJ, Badhe YP, Tambe SS, Kulkarni BD., J Biosci 35(4), 2010
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Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait.
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Activation of the cholinergic system endows compositional properties to striatal cell assemblies.
Carrillo-Reid L, Tecuapetla F, Ibáñez-Sandoval O, Hernández-Cruz A, Galarraga E, Bargas J., J Neurophysiol 101(2), 2009
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Correlative linear neighborhood propagation for video annotation.
Tang J, Hua XS, Wang M, Gu Z, Qi GJ, Wu X., IEEE Trans Syst Man Cybern B Cybern 39(2), 2009
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A volume-based heat-diffusion classifier.
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Ubiquitously supervised subspace learning.
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Incremental isometric embedding of high-dimensional data using connected neighborhood graphs.
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Efficient recognition of highly similar 3D objects in range images.
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Synchronized submanifold embedding for person-independent pose estimation and beyond.
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Pattern discovery in expression profiling data.
Katagiri F, Glazebrook J., Curr Protoc Mol Biol Chapter 22(), 2009
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Prototype classification: insights from machine learning.
Graf AB, Bousquet O, Rätsch G, Schölkopf B., Neural Comput 21(1), 2009
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Computational Models for Neuromuscular Function.
Valero-Cuevas FJ, Hoffmann H, Kurse MU, Kutch JJ, Theodorou EA., IEEE Rev Biomed Eng 2(), 2009
PMID: 21687779

Shape, size, and robustness: feasible regions in the parameter space of biochemical networks.
Dayarian A, Chaves M, Sontag ED, Sengupta AM., PLoS Comput Biol 5(1), 2009
PMID: 19119410

Nonlinear dimensionality reduction by locally linear inlaying.
Hou Y, Zhang P, Xu X, Zhang X, Li W., IEEE Trans Neural Netw 20(2), 2009
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G-protein coupled receptor signaling architecture of mammalian immune cells.
Polouliakh N, Nock R, Nielsen F, Kitano H., PLoS One 4(1), 2009
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Manifold-based learning and synthesis.
Huang D, Yi Z, Pu X., IEEE Trans Syst Man Cybern B Cybern 39(3), 2009
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Markerless gating for lung cancer radiotherapy based on machine learning techniques.
Lin T, Li R, Tang X, Dy JG, Jiang SB., Phys Med Biol 54(6), 2009
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Multiscale modeling of emergent materials: biological and soft matter.
Murtola T, Bunker A, Vattulainen I, Deserno M, Karttunen M., Phys Chem Chem Phys 11(12), 2009
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Tracking people on a torus.
Elgammal A, Lee CS., IEEE Trans Pattern Anal Mach Intell 31(3), 2009
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Glimmer: multilevel MDS on the GPU.
Ingram S, Munzner T, Olano M., IEEE Trans Vis Comput Graph 15(2), 2009
PMID: 19147889

Steady-state kinetic modeling constrains cellular resting states and dynamic behavior.
Purvis JE, Radhakrishnan R, Diamond SL., PLoS Comput Biol 5(3), 2009
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Dimensionality reduction oriented toward the feature visualization for ischemia detection.
Delgado-Trejos E, Perera-Lluna A, Vallverdú-Ferrer M, Caminal-Magrans P, Castellanos-Domínguez G., IEEE Trans Inf Technol Biomed 13(4), 2009
PMID: 19304491

Personalized X-ray 3-D reconstruction of the scoliotic spine from hybrid statistical and image-based models.
Kadoury S, Cheriet F, Labelle H., IEEE Trans Med Imaging 28(9), 2009
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Head pose estimation in computer vision: a survey.
Murphy-Chutorian E, Trivedi MM., IEEE Trans Pattern Anal Mach Intell 31(4), 2009
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Topological methods for exploring low-density states in biomolecular folding pathways.
Yao Y, Sun J, Huang X, Bowman GR, Singh G, Lesnick M, Guibas LJ, Pande VS, Carlsson G., J Chem Phys 130(14), 2009
PMID: 19368437

Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity.
Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M., J Neurophysiol 102(1), 2009
PMID: 19357332

Exploiting motion correlations in 3-D articulated human motion tracking.
Xu X, Li B., IEEE Trans Image Process 18(6), 2009
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Distribution-based dimensionality reduction applied to articulated motion recognition.
Nayak S, Sarkar S, Loeding B., IEEE Trans Pattern Anal Mach Intell 31(5), 2009
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Image denoising using mixtures of projected Gaussian Scale Mixtures.
Goossens B, Pizurica A, Philips W., IEEE Trans Image Process 18(8), 2009
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Trabecular bone analysis in CT and X-ray images of the proximal femur for the assessment of local bone quality.
Fritscher K, Grunerbl A, Hanni M, Suhm N, Hengg C, Schubert R., IEEE Trans Med Imaging 28(10), 2009
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Linear neighborhood propagation and its applications.
Wang J, Wang F, Zhang C, Shen HC, Quan L., IEEE Trans Pattern Anal Mach Intell 31(9), 2009
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A hierarchical spectral clustering and nonlinear dimensionality reduction scheme for detection of prostate cancer from magnetic resonance spectroscopy (MRS).
Tiwari P, Rosen M, Madabhushi A., Med Phys 36(9), 2009
PMID: 19810465

In-TFT-array-process micro defect inspection using nonlinear principal component analysis.
Liu YH, Wang CK, Ting Y, Lin WZ, Kang ZH, Chen CS, Hwang JS., Int J Mol Sci 10(10), 2009
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FINE: fisher information nonparametric embedding.
Carter KM, Raich R, Finn WG, Hero AO., IEEE Trans Pattern Anal Mach Intell 31(11), 2009
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Statistical challenges of high-dimensional data.
Johnstone IM, Titterington DM., Philos Trans A Math Phys Eng Sci 367(1906), 2009
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Exemplar-based visualization of large document corpus.
Chen Y, Wang L, Dong M, Hua J., IEEE Trans Vis Comput Graph 15(6), 2009
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Applying manifold learning to plotting approximate contour trees.
Takahashi S, Fujishiro I, Okada M., IEEE Trans Vis Comput Graph 15(6), 2009
PMID: 19834188

Fast similarity search for learned metrics.
Kulis B, Jain P, Grauman K., IEEE Trans Pattern Anal Mach Intell 31(12), 2009
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Sensor noise suppression.
de Cheveigné A, Simon JZ., J Neurosci Methods 168(1), 2008
PMID: 17963844

Predicting the shapes of bones at a joint: application to the shoulder.
Yang YM, Rueckert D, Bull AM., Comput Methods Biomech Biomed Engin 11(1), 2008
PMID: 17943483

On multidimensional scaling and the embedding of self-organising maps.
Yin H., Neural Netw 21(2-3), 2008
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BoostMap: an embedding method for efficient nearest neighbor retrieval.
Athitsos V, Alon J, Sclaroff S, Kollios G., IEEE Trans Pattern Anal Mach Intell 30(1), 2008
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Diffusion maps clustering for magnetic resonance q-ball imaging segmentation.
Wassermann D, Descoteaux M, Deriche R., Int J Biomed Imaging 2008(), 2008
PMID: 18317506

A comprehensive segmentation, registration, and cancer detection scheme on 3 Tesla in vivo prostate DCE-MRI.
Viswanath S, Bloch BN, Genega E, Rofsky N, Lenkinski R, Chappelow J, Toth R, Madabhushi A., Med Image Comput Comput Assist Interv 11(pt 1), 2008
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Modular Toolkit for Data Processing (MDP): A Python Data Processing Framework.
Zito T, Wilbert N, Wiskott L, Berkes P., Front Neuroinform 2(), 2008
PMID: 19169361

REDUS: Finding Reducible Subspaces in High Dimensional Data.
Zhang X, Pan F, Wang W., Proc ACM Int Conf Inf Knowl Manag 2008(), 2008
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Encoding network states by striatal cell assemblies.
Carrillo-Reid L, Tecuapetla F, Tapia D, Hernández-Cruz A, Galarraga E, Drucker-Colin R, Bargas J., J Neurophysiol 99(3), 2008
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Gaussian process dynamical models for human motion.
Wang JM, Fleet DJ, Hertzmann A., IEEE Trans Pattern Anal Mach Intell 30(2), 2008
PMID: 18084059

Ranked centroid projection: a data visualization approach with self-organizing maps.
Yen GG, Wu Z., IEEE Trans Neural Netw 19(2), 2008
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Estimating effective degrees of freedom in motor systems.
Clewley RH, Guckenheimer JM, Valero-Cuevas FJ., IEEE Trans Biomed Eng 55(2 pt 1), 2008
PMID: 18269978

Manifold parametrizations by eigenfunctions of the Laplacian and heat kernels.
Jones PW, Maggioni M, Schul R., Proc Natl Acad Sci U S A 105(6), 2008
PMID: 18258744

A sensorimotor approach to sound localization.
Aytekin M, Moss CF, Simon JZ., Neural Comput 20(3), 2008
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Alignment of overlapping locally scaled patches for multidimensional scaling and dimensionality reduction.
Yang L., IEEE Trans Pattern Anal Mach Intell 30(3), 2008
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Discriminant locally linear embedding with high-order tensor data.
Li X, Lin S, Yan S, Xu D., IEEE Trans Syst Man Cybern B Cybern 38(2), 2008
PMID: 18348919

Topology preserving non-negative matrix factorization for face recognition.
Zhang T, Fang B, Tang YY, He G, Wen J., IEEE Trans Image Process 17(4), 2008
PMID: 18390365

Locality-preserved maximum information projection.
Wang H, Chen S, Hu Z, Zheng W., IEEE Trans Neural Netw 19(4), 2008
PMID: 18390305

Improved classifier for computer-aided polyp detection in CT colonography by nonlinear dimensionality reduction.
Wang S, Yao J, Summers RM., Med Phys 35(4), 2008
PMID: 18491532

Predictive gene lists for breast cancer prognosis: a topographic visualisation study.
Sivaraksa M, Lowe D., BMC Med Genomics 1(), 2008
PMID: 18419801

Riemannian manifold learning.
Lin T, Zha H., IEEE Trans Pattern Anal Mach Intell 30(5), 2008
PMID: 18369250

Image-based human age estimation by manifold learning and locally adjusted robust regression.
Guo G, Fu Y, Dyer CR, Huang TS., IEEE Trans Image Process 17(7), 2008
PMID: 18586625

Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies.
Lee G, Rodriguez C, Madabhushi A., IEEE/ACM Trans Comput Biol Bioinform 5(3), 2008
PMID: 18670041

A remark on global positioning from local distances.
Singer A., Proc Natl Acad Sci U S A 105(28), 2008
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Kernel Based Nonlinear Dimensionality Reduction and Classification for Genomic Microarray.
Li X, Shu L., Sensors (Basel) 8(7), 2008
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Twin kernel embedding.
Guo Y, Gao J, Kwan PW., IEEE Trans Pattern Anal Mach Intell 30(8), 2008
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Nonlinear dimensionality reduction of data lying on the multicluster manifold.
Meng D, Leung Y, Fung T, Xu Z., IEEE Trans Syst Man Cybern B Cybern 38(4), 2008
PMID: 18632401

Algorithmic dimensionality reduction for molecular structure analysis.
Brown WM, Martin S, Pollock SN, Coutsias EA, Watson JP., J Chem Phys 129(6), 2008
PMID: 18715062

Data visualization and dimensionality reduction using kernel maps with a reference point.
Suykens JA., IEEE Trans Neural Netw 19(9), 2008
PMID: 18779084

Model-driven segmentation of articulating humans in Laplacian Eigenspace.
Sundaresan A, Chellappa R., IEEE Trans Pattern Anal Mach Intell 30(10), 2008
PMID: 18703830

Graph Laplacian tomography from unknown random projections.
Coifman RR, Shkolnisky Y, Sigworth FJ, Singer A., IEEE Trans Image Process 17(10), 2008
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Generalized linear discriminant analysis: a unified framework and efficient model selection.
Ji S, Ye J., IEEE Trans Neural Netw 19(10), 2008
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Reconstruction Using Witness Complexes.
Guibas LJ, Oudot SY., Discrete Comput Geom 40(3), 2008
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Perturbational formulation of principal component analysis in molecular dynamics simulation.
Koyama YM, Kobayashi TJ, Tomoda S, Ueda HR., Phys Rev E Stat Nonlin Soft Matter Phys 78(4 pt 2), 2008
PMID: 18999556

A scalable kernel-based semisupervised metric learning algorithm with out-of-sample generalization ability.
Yeung DY, Chang H, Dai G., Neural Comput 20(11), 2008
PMID: 18439136

Boosting method for local learning in statistical pattern recognition.
Kawakita M, Eguchi S., Neural Comput 20(11), 2008
PMID: 18533822

A modified backpropagation learning algorithm with added emotional coefficients.
Khashman A., IEEE Trans Neural Netw 19(11), 2008
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Representational similarity analysis - connecting the branches of systems neuroscience.
Kriegeskorte N, Mur M, Bandettini P., Front Syst Neurosci 2(), 2008
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Correlation metric for generalized feature extraction.
Fu Y, Yan S, Huang TS., IEEE Trans Pattern Anal Mach Intell 30(12), 2008
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Head yaw estimation from asymmetry of facial appearance.
Ma B, Shan S, Chen X, Gao W., IEEE Trans Syst Man Cybern B Cybern 38(6), 2008
PMID: 19022722

NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships.
Cedano J, Huerta M, Querol E., Adv Bioinformatics (), 2008
PMID: 19920990

Transferring of speech movements from video to 3D face space.
Pei Y, Zha H., IEEE Trans Vis Comput Graph 13(1), 2007
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Graph embedding and extensions: a general framework for dimensionality reduction.
Yan S, Xu D, Zhang B, Zhang HJ, Yang Q, Lin S., IEEE Trans Pattern Anal Mach Intell 29(1), 2007
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A new approach of data clustering using a flock of agents.
Picarougne F, Azzag H, Venturini G, Guinot C., Evol Comput 15(3), 2007
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High throughput analysis of breast cancer specimens on the grid.
Yang L, Chen W, Meer P, Salaru G, Feldman MD, Foran DJ., Med Image Comput Comput Assist Interv 10(pt 1), 2007
PMID: 18051110

FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.
Fu L, Medico E., BMC Bioinformatics 8(), 2007
PMID: 17204155

Globally maximizing, locally minimizing: unsupervised discriminant projection with applications to face and palm biometrics.
Yang J, Zhang D, Yang JY, Niu B., IEEE Trans Pattern Anal Mach Intell 29(4), 2007
PMID: 17299222

Estimates of the information content and dimensionality of natural scenes from proximity distributions.
Chandler DM, Field DJ., J Opt Soc Am A Opt Image Sci Vis 24(4), 2007
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Nutrigenomics: concepts and applications to pharmacogenomics and clinical medicine.
Kaput J, Perlina A, Hatipoglu B, Bartholomew A, Nikolsky Y., Pharmacogenomics 8(4), 2007
PMID: 17391074

Interactive image segmentation via adaptive weighted distances.
Protiere A, Sapiro G., IEEE Trans Image Process 16(4), 2007
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Variable-free exploration of stochastic models: a gene regulatory network example.
Erban R, Frewen TA, Wang X, Elston TC, Coifman R, Nadler B, Kevrekidis IG., J Chem Phys 126(15), 2007
PMID: 17461667

Retrograde adaptive resonance theory based on the role of nitric oxide in long-term potentiation.
Jia P, Yin J, Hu D, Zhou Z., J Comput Neurosci 23(1), 2007
PMID: 17404827

A generic framework for tracking using particle filter with dynamic shape prior.
Rathi Y, Vaswani N, Tannenbaum A., IEEE Trans Image Process 16(5), 2007
PMID: 17491466

Complexity of type 2 diabetes mellitus data sets emerging from nutrigenomic research: a case for dimensionality reduction?
Kaput J, Dawson K., Mutat Res 622(1-2), 2007
PMID: 17559889

Calculation of the free energy and cooperativity of protein folding.
Kentsis A, Gindin T, Mezei M, Osman R., PLoS One 2(5), 2007
PMID: 17505540

Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction.
Plaku E, Stamati H, Clementi C, Kavraki LE., Proteins 67(4), 2007
PMID: 17380507

Learning and matching of dynamic shape manifolds for human action recognition.
Wang L, Suter D., IEEE Trans Image Process 16(6), 2007
PMID: 17547142

Defining functional distance using manifold embeddings of gene ontology annotations.
Lerman G, Shakhnovich BE., Proc Natl Acad Sci U S A 104(27), 2007
PMID: 17595300

Untangling invariant object recognition.
DiCarlo JJ, Cox DD., Trends Cogn Sci 11(8), 2007
PMID: 17631409

Information discriminant analysis: feature extraction with an information-theoretic objective.
Nenadic Z., IEEE Trans Pattern Anal Mach Intell 29(8), 2007
PMID: 17568143

Surface deformation models for nonrigid 3D shape recovery.
Salzmann M, Pilet J, Ilic S, Fua P., IEEE Trans Pattern Anal Mach Intell 29(8), 2007
PMID: 17568151

Comparison of quantitative methods for cell-shape analysis.
Pincus Z, Theriot JA., J Microsc 227(pt 2), 2007
PMID: 17845709

Parametric embedding for class visualization.
Iwata T, Saito K, Ueda N, Stromsten S, Griffiths TL, Tenenbaum JB., Neural Comput 19(9), 2007
PMID: 17650069

DD-HDS: A method for visualization and exploration of high-dimensional data.
Lespinats S, Verleysen M, Giron A, Fertil B., IEEE Trans Neural Netw 18(5), 2007
PMID: 18220179

Learning to transform time series with a few examples.
Rahimi A, Recht B, Darrell T., IEEE Trans Pattern Anal Mach Intell 29(10), 2007
PMID: 17699921

Techniques for extracting single-trial activity patterns from large-scale neural recordings.
Churchland MM, Yu BM, Sahani M, Shenoy KV., Curr Opin Neurobiol 17(5), 2007
PMID: 18093826

Clustering and embedding using commute times.
Qiu HJ, Hancock ER., IEEE Trans Pattern Anal Mach Intell 29(11), 2007
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Marginal Fisher analysis and its variants for human gait recognition and content- based image retrieval.
Xu D, Yan S, Tao D, Lin S, Zhang HJ., IEEE Trans Image Process 16(11), 2007
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A mathematical tool for exploring the dynamics of biological networks.
Barbano PE, Spivak M, Flajolet M, Nairn AC, Greengard P, Greengard L., Proc Natl Acad Sci U S A 104(49), 2007
PMID: 18032599

Orthogonal neighborhood preserving projections: a projection-based dimensionality reduction technique.
Kokiopoulou E, Saad Y., IEEE Trans Pattern Anal Mach Intell 29(12), 2007
PMID: 17934224

Natural variation in RPS2-mediated resistance among Arabidopsis accessions: correlation between gene expression profiles and phenotypic responses.
Van Poecke RM, Sato M, Lenarz-Wyatt L, Weisberg S, Katagiri F., Plant Cell 19(12), 2007
PMID: 18083910

Estimation of the intrinsic dimensionality of fMRI data.
Cordes D, Nandy RR., Neuroimage 29(1), 2006
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Application of compression-based distance measures to protein sequence classification: a methodological study.
Kocsor A, Kertész-Farkas A, Kaján L, Pongor S., Bioinformatics 22(4), 2006
PMID: 16317070

Generalized multidimensional scaling: a framework for isometry-invariant partial surface matching.
Bronstein AM, Bronstein MM, Kimmel R., Proc Natl Acad Sci U S A 103(5), 2006
PMID: 16432211

Spectral embedding finds meaningful (relevant) structure in image and microarray data.
Higgs BW, Weller J, Solka JL., BMC Bioinformatics 7(), 2006
PMID: 16483359

From crawling to cognition: analyzing the dynamical interactions among populations of neurons.
Briggman KL, Abarbanel HD, Kristan WB., Curr Opin Neurobiol 16(2), 2006
PMID: 16564165

Metric learning for text documents.
Lebanon G., IEEE Trans Pattern Anal Mach Intell 28(4), 2006
PMID: 16566500

Sparse representation for coarse and fine object recognition.
Pham TV, Smeulders AW., IEEE Trans Pattern Anal Mach Intell 28(4), 2006
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Some Results on Mean Square Error for Factor Score Prediction.
Krijnen WP., Psychometrika 71(2), 2006
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Local multidimensional scaling.
Venna J, Kaski S., Neural Netw 19(6-7), 2006
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Online data visualization using the neural gas network.
Estévez PA, Figueroa CJ., Neural Netw 19(6-7), 2006
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Local dimensionality reduction and supervised learning within natural clusters for biomedical data analysis.
Pechenizkiy M, Tsymbal A, Puuronen S., IEEE Trans Inf Technol Biomed 10(3), 2006
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Font adaptive word indexing of modern printed documents.
Marinai S, Marino E, Soda G., IEEE Trans Pattern Anal Mach Intell 28(8), 2006
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Learning nonlinear image manifolds by global alignment of local linear models.
Verbeek J., IEEE Trans Pattern Anal Mach Intell 28(8), 2006
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Encoding and decoding of overlapping odor sequences.
Broome BM, Jayaraman V, Laurent G., Neuron 51(4), 2006
PMID: 16908412

Diffusion maps and coarse-graining: A unified framework for dimensionality reduction, graph partitioning, and data set parameterization.
Lafon S, Lee AB., IEEE Trans Pattern Anal Mach Intell 28(9), 2006
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Nonlocal estimation of manifold structure.
Bengio Y, Monperrus M, Larochelle H., Neural Comput 18(10), 2006
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Kalman filtering for disease-state estimation from microarray data.
Kelemen JZ, Kertész-Farkas A, Kocsor A, Puskás LG., Bioinformatics 22(24), 2006
PMID: 17065158

Data fusion and multicue data matching by diffusion maps.
Lafon S, Keller Y, Coifman RR., IEEE Trans Pattern Anal Mach Intell 28(11), 2006
PMID: 17063683

High-dimensional visual analytics: interactive exploration guided by pairwise views of point distributions.
Wilkinson L, Anand A, Grossman R., IEEE Trans Vis Comput Graph 12(6), 2006
PMID: 17073361

Orthogonal laplacianfaces for face recognition.
Cai D, He X, Han J, Zhang HJ., IEEE Trans Image Process 15(11), 2006
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Olfactory coding: when smells collide.
Antolin S, Jefferis GS., Curr Biol 16(23), 2006
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SLLE for predicting membrane protein types.
Wang M, Yang J, Xu ZJ, Chou KC., J Theor Biol 232(1), 2005
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Bilinear sparse coding for invariant vision.
Grimes DB, Rao RP., Neural Comput 17(1), 2005
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Locally linear discriminant analysis for multimodally distributed classes for face recognition with a single model image.
Kim TK, Kittler J., IEEE Trans Pattern Anal Mach Intell 27(3), 2005
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Face recognition using laplacianfaces.
He X, Yan S, Hu Y, Niyogi P, Zhang HJ., IEEE Trans Pattern Anal Mach Intell 27(3), 2005
PMID: 15747789

Model-based segmentation of medical imagery by matching distributions.
Freedman D, Radke RJ, Zhang T, Jeong Y, Lovelock DM, Chen GT., IEEE Trans Med Imaging 24(3), 2005
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Hippocampal shape analysis using medial surfaces.
Bouix S, Pruessner JC, Louis Collins D, Siddiqi K., Neuroimage 25(4), 2005
PMID: 15850726

Survey of clustering algorithms.
Xu R, Wunsch D., IEEE Trans Neural Netw 16(3), 2005
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Detail preserving reproduction of color images for monochromats and dichromats.
Rasche K, Geist R, Westall J., IEEE Comput Graph Appl 25(3), 2005
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Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.
Coifman RR, Lafon S, Lee AB, Maggioni M, Nadler B, Warner F, Zucker SW., Proc Natl Acad Sci U S A 102(21), 2005
PMID: 15899970

Kernel pooled local subspaces for classification.
Zhang P, Peng J, Domeniconi C., IEEE Trans Syst Man Cybern B Cybern 35(3), 2005
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Cross-entropy embedding of high-dimensional data using the neural gas model.
Estévez PA, Figueroa CJ, Saito K., Neural Netw 18(5-6), 2005
PMID: 16087314

CLUE: cluster-based retrieval of images by unsupervised learning.
Chen Y, Wang JZ, Krovetz R., IEEE Trans Image Process 14(8), 2005
PMID: 16121465

Non-linear PCA: a missing data approach.
Scholz M, Kaplan F, Guy CL, Kopka J, Selbig J., Bioinformatics 21(20), 2005
PMID: 16109748

Principal surfaces from unsupervised kernel regression.
Meinicke P, Klanke S, Memisevic R, Ritter H., IEEE Trans Pattern Anal Mach Intell 27(9), 2005
PMID: 16173183

A tool for the quantitative spatial analysis of complex cellular systems.
Fernandez-Gonzalez R, Barcellos-Hoff MH, Ortiz-de-Solórzano C., IEEE Trans Image Process 14(9), 2005
PMID: 16190466

Geometric diffusions for the analysis of data from sensor networks.
Coifman RR, Maggioni M, Zucker SW, Kevrekidis IG., Curr Opin Neurobiol 15(5), 2005
PMID: 16150587

Building k edge-disjoint spanning trees of minimum total length for isometric data embedding.
Yang L., IEEE Trans Pattern Anal Mach Intell 27(10), 2005
PMID: 16238003

MetricMap: an embedding technique for processing distance-based queries in metric spaces.
Wang JT, Wang X, Shasha D, Zhang K., IEEE Trans Syst Man Cybern B Cybern 35(5), 2005
PMID: 16240772

Encoding a temporally structured stimulus with a temporally structured neural representation.
Brown SL, Joseph J, Stopfer M., Nat Neurosci 8(11), 2005
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Incremental online learning in high dimensions.
Vijayakumar S, D'Souza A, Schaal S., Neural Comput 17(12), 2005
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Supervised nonlinear dimensionality reduction for visualization and classification.
Geng X, Zhan DC, Zhou ZH., IEEE Trans Syst Man Cybern B Cybern 35(6), 2005
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Protein ranking: from local to global structure in the protein similarity network.
Weston J, Elisseeff A, Zhou D, Leslie CS, Noble WS., Proc Natl Acad Sci U S A 101(17), 2004
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Temporal dynamics of shape analysis in macaque visual area V2.
Hegdé J, Van Essen DC., J Neurophysiol 92(5), 2004
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Blind normalization of speech from different channels.
Levina DN., J Acoust Soc Am 116(1), 2004
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Locally linear embedding for dimensionality reduction in QSAR.
L'Heureux PJ, Carreau J, Bengio Y, Delalleau O, Yue SY., J Comput Aided Mol Des 18(7-9), 2004
PMID: 15729847

Volatile metabolic monitoring of glycemic status in diabetes using electronic olfaction.
Dalton P, Gelperin A, Preti G., Diabetes Technol Ther 6(4), 2004
PMID: 15321012

Distance-preserving projection of high-dimensional data for nonlinear dimensionality reduction.
Yang L., IEEE Trans Pattern Anal Mach Intell 26(9), 2004
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Learning eigenfunctions links spectral embedding and kernel PCA.
Bengio Y, Delalleau O, Le Roux N, Paiement JF, Vincent P, Ouimet M., Neural Comput 16(10), 2004
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Self-organizing maps and clustering methods for matrix data.
Seo S, Obermayer K., Neural Netw 17(8-9), 2004
PMID: 15555862

The pre-image problem in kernel methods.
Kwok JT, Tsang IW., IEEE Trans Neural Netw 15(6), 2004
PMID: 15565778

Foldamer simulations: novel computational methods and applications to poly-phenylacetylene oligomers.
Elmer SP, Pande VS., J Chem Phys 121(24), 2004
PMID: 15606301

Understanding protein flexibility through dimensionality reduction.
Teodoro ML, Phillips GN, Kavraki LE., J Comput Biol 10(3-4), 2003
PMID: 12935348

Hessian eigenmaps: locally linear embedding techniques for high-dimensional data.
Donoho DL, Grimes C., Proc Natl Acad Sci U S A 100(10), 2003
PMID: 16576753

Independent spectral representations of images for recognition.
Liu X, Cheng L., J Opt Soc Am A Opt Image Sci Vis 20(7), 2003
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Exploring the nonlinear geometry of protein homology.
Farnum MA, Xu H, Agrafiotis DK., Protein Sci 12(8), 2003
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Computation in a single neuron: Hodgkin and Huxley revisited.
Agüera y Arcas B, Fairhall AL, Bialek W., Neural Comput 15(8), 2003
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Is there something out there? Inferring space from sensorimotor dependencies.
Philipona D, O'Regan JK, Nadal JP., Neural Comput 15(9), 2003
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Intensity versus identity coding in an olfactory system.
Stopfer M, Jayaraman V, Laurent G., Neuron 39(6), 2003
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Local Context Finder (LCF) reveals multidimensional relationships among mRNA expression profiles of Arabidopsis responding to pathogen infection.
Katagiri F, Glazebrook J., Proc Natl Acad Sci U S A 100(19), 2003
PMID: 12960373

A modified update rule for stochastic proximity embedding.
Rassokhin DN, Agrafiotis DK., J Mol Graph Model 22(2), 2003
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Transition path sampling: throwing ropes over rough mountain passes, in the dark.
Bolhuis PG, Chandler D, Dellago C, Geissler PL., Annu Rev Phys Chem 53(), 2002
PMID: 11972010

Sensor-independent stimulus representations.
Levin DN., Proc Natl Acad Sci U S A 99(11), 2002
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Representations of sound that are insensitive to spectral filtering and parametrization procedures.
Levin DN., J Acoust Soc Am 111(5 pt 1), 2002
PMID: 12051446

Data visualisation and manifold mapping using the ViSOM.
Yin H., Neural Netw 15(8-9), 2002
PMID: 12416690

A self-organizing principle for learning nonlinear manifolds.
Agrafiotis DK, Xu H., Proc Natl Acad Sci U S A 99(25), 2002
PMID: 12444256

Inferotemporal neurons represent low-dimensional configurations of parameterized shapes.
Op de Beeck H, Wagemans J, Vogels R., Nat Neurosci 4(12), 2001
PMID: 11713468

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