Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks

Gläßer C, Haberer G, Finkemeier I, Pfannschmidt T, Kleine T, Leister D, Dietz K-J, Häusler RE, Grimm B, Mayer KFX (2014)
Molecular Plant 7(7): 1167-1190.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Gläßer, Christine; Haberer, Georg; Finkemeier, Iris; Pfannschmidt, Thomas; Kleine, Tatjana; Leister, Dario; Dietz, Karl-JosefUniBi; Häusler, Rainer Erich; Grimm, Bernhard; Mayer, Klaus Franz Xaver
Einrichtung
Fakultät für Biologie > Biochemie und Physiologie der Pflanzen
Abstract / Bemerkung
Plastid-to-nucleus signaling is essential for the coordination and adjustment of cellular metabolism in response to environmental and developmental cues of plant cells. A variety of operational retrograde signaling pathways have been described that are thought to be triggered by reactive oxygen species, photosynthesis redox imbalance, tetrapyrrole intermediates, and other metabolic traits. Here we report a meta-analysis based on transcriptome and protein interaction data. Comparing the output of these pathways reveals the commonalities and peculiarities stimulated by six different sources impinging on operational retrograde signaling. Our study provides novel insights into the interplay of these pathways, supporting the existence of an as-yet unknown core response module of genes being regulated under all conditions tested. Our analysis further highlights affiliated regulatory cis-elements and classifies abscisic acid and auxin-based signaling as secondary components involved in the response cascades following a plastidial signal. Our study provides a global analysis of structure and interfaces of different pathways involved in plastid-to-nucleus signaling and a new view on this complex cellular communication network. The Author 2014. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.
Stichworte
meta-analysis; retrograde signaling; auxin.; abscisic acid
Erscheinungsjahr
2014
Zeitschriftentitel
Molecular Plant
Band
7
Ausgabe
7
Seite(n)
1167-1190
ISSN
1674-2052
Page URI
https://pub.uni-bielefeld.de/record/2685689

Zitieren

Gläßer C, Haberer G, Finkemeier I, et al. Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular Plant. 2014;7(7):1167-1190.
Gläßer, C., Haberer, G., Finkemeier, I., Pfannschmidt, T., Kleine, T., Leister, D., Dietz, K. - J., et al. (2014). Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular Plant, 7(7), 1167-1190. doi:10.1093/mp/ssu042
Gläßer, Christine, Haberer, Georg, Finkemeier, Iris, Pfannschmidt, Thomas, Kleine, Tatjana, Leister, Dario, Dietz, Karl-Josef, Häusler, Rainer Erich, Grimm, Bernhard, and Mayer, Klaus Franz Xaver. 2014. “Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks”. Molecular Plant 7 (7): 1167-1190.
Gläßer, C., Haberer, G., Finkemeier, I., Pfannschmidt, T., Kleine, T., Leister, D., Dietz, K. - J., Häusler, R. E., Grimm, B., and Mayer, K. F. X. (2014). Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular Plant 7, 1167-1190.
Gläßer, C., et al., 2014. Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular Plant, 7(7), p 1167-1190.
C. Gläßer, et al., “Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks”, Molecular Plant, vol. 7, 2014, pp. 1167-1190.
Gläßer, C., Haberer, G., Finkemeier, I., Pfannschmidt, T., Kleine, T., Leister, D., Dietz, K.-J., Häusler, R.E., Grimm, B., Mayer, K.F.X.: Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular Plant. 7, 1167-1190 (2014).
Gläßer, Christine, Haberer, Georg, Finkemeier, Iris, Pfannschmidt, Thomas, Kleine, Tatjana, Leister, Dario, Dietz, Karl-Josef, Häusler, Rainer Erich, Grimm, Bernhard, and Mayer, Klaus Franz Xaver. “Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks”. Molecular Plant 7.7 (2014): 1167-1190.

21 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Arabidopsis DXO1 links RNA turnover and chloroplast function independently of its enzymatic activity.
Kwasnik A, Wang VY, Krzyszton M, Gozdek A, Zakrzewska-Placzek M, Stepniak K, Poznanski J, Tong L, Kufel J., Nucleic Acids Res 47(9), 2019
PMID: 30949699
Embryophyte stress signaling evolved in the algal progenitors of land plants.
de Vries J, Curtis BA, Gould SB, Archibald JM., Proc Natl Acad Sci U S A 115(15), 2018
PMID: 29581286
Interplay of the two ancient metabolites auxin and MEcPP regulates adaptive growth.
Jiang J, Rodriguez-Furlan C, Wang JZ, de Souza A, Ke H, Pasternak T, Lasok H, Ditengou FA, Palme K, Dehesh K., Nat Commun 9(1), 2018
PMID: 29891932
Cotton Late Embryogenesis Abundant (LEA2) Genes Promote Root Growth and Confer Drought Stress Tolerance in Transgenic Arabidopsis thaliana.
Magwanga RO, Lu P, Kirungu JN, Dong Q, Hu Y, Zhou Z, Cai X, Wang X, Hou Y, Wang K, Liu F., G3 (Bethesda) 8(8), 2018
PMID: 29934376
Oxidation of P700 Ensures Robust Photosynthesis.
Shimakawa G, Miyake C., Front Plant Sci 9(), 2018
PMID: 30459798
Chloroplast proteome response to drought stress and recovery in tomato (Solanum lycopersicum L.).
Tamburino R, Vitale M, Ruggiero A, Sassi M, Sannino L, Arena S, Costa A, Batelli G, Zambrano N, Scaloni A, Grillo S, Scotti N., BMC Plant Biol 17(1), 2017
PMID: 28183294
Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond.
Chan KX, Phua SY, Crisp P, McQuinn R, Pogson BJ., Annu Rev Plant Biol 67(), 2016
PMID: 26735063
Novel connections in plant organellar signalling link different stress responses and signalling pathways.
Kmiecik P, Leonardelli M, Teige M., J Exp Bot 67(13), 2016
PMID: 27053718
Redox- and Reactive Oxygen Species-Dependent Signaling into and out of the Photosynthesizing Chloroplast.
Dietz KJ, Turkan I, Krieger-Liszkay A., Plant Physiol 171(3), 2016
PMID: 27255485
A Chinese cabbage (Brassica campetris subsp. Chinensis) τ-type glutathione-S-transferase stimulates Arabidopsis development and primes against abiotic and biotic stress.
Kao CW, Bakshi M, Sherameti I, Dong S, Reichelt M, Oelmüller R, Yeh KW., Plant Mol Biol 92(6), 2016
PMID: 27796720
Photosynthetic complex stoichiometry dynamics in higher plants: biogenesis, function, and turnover of ATP synthase and the cytochrome b6f complex.
Schöttler MA, Tóth SZ, Boulouis A, Kahlau S., J Exp Bot 66(9), 2015
PMID: 25540437
Redox signaling and stress tolerance in plants: a focus on vitamin E.
Miret JA, Munné-Bosch S., Ann N Y Acad Sci 1340(), 2015
PMID: 25586886
Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
Yamburenko MV, Zubo YO, Börner T., Plant J 82(6), 2015
PMID: 25976841
The roles of tetrapyrroles in plastid retrograde signaling and tolerance to environmental stresses.
Zhang ZW, Zhang GC, Zhu F, Zhang DW, Yuan S., Planta 242(6), 2015
PMID: 26297452
Photosynthetic light reactions: integral to chloroplast retrograde signalling.
Gollan PJ, Tikkanen M, Aro EM., Curr Opin Plant Biol 27(), 2015
PMID: 26318477
A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis.
Rutowicz K, Puzio M, Halibart-Puzio J, Lirski M, Kotliński M, Kroteń MA, Knizewski L, Lange B, Muszewska A, Śniegowska-Świerk K, Kościelniak J, Iwanicka-Nowicka R, Buza K, Janowiak F, Żmuda K, Jõesaar I, Laskowska-Kaszub K, Fogtman A, Kollist H, Zielenkiewicz P, Tiuryn J, Siedlecki P, Swiezewski S, Ginalski K, Koblowska M, Archacki R, Wilczynski B, Rapacz M, Jerzmanowski A., Plant Physiol 169(3), 2015
PMID: 26351307
Chloroplast signaling within, between and beyond cells.
Bobik K, Burch-Smith TM., Front Plant Sci 6(), 2015
PMID: 26500659
RNA Sequencing Analysis of the msl2msl3, crl, and ggps1 Mutants Indicates that Diverse Sources of Plastid Dysfunction Do Not Alter Leaf Morphology Through a Common Signaling Pathway.
Luesse DR, Wilson ME, Haswell ES., Front Plant Sci 6(), 2015
PMID: 26734046
The family of LSU-like proteins.
Sirko A, Wawrzyńska A, Rodríguez MC, Sęktas P., Front Plant Sci 5(), 2014
PMID: 25628631
A Functional Antagonistic Relationship between Auxin and Mitochondrial Retrograde Signaling Regulates Alternative Oxidase1a Expression in Arabidopsis.
Ivanova A, Law SR, Narsai R, Duncan O, Lee JH, Zhang B, Van Aken O, Radomiljac JD, van der Merwe M, Yi K, Whelan J., Plant Physiol 165(3), 2014
PMID: 24820025
Intracellular communication.
Grimm B, Dehesh K, Zhang L, Leister D., Mol Plant 7(7), 2014
PMID: 24994836

189 References

Daten bereitgestellt von Europe PubMed Central.

Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling.
Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K., Plant Cell 15(1), 2003
PMID: 12509522
Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression.
Abe H, Yamaguchi-Shinozaki K, Urao T, Iwasaki T, Hosokawa D, Shinozaki K., Plant Cell 9(10), 1997
PMID: 9368419
Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4.
Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR., Plant J. 43(4), 2005
PMID: 16098105
Tobacco Mg protoporphyrin IX methyltransferase is involved in inverse activation of Mg porphyrin and protoheme synthesis.
Alawady AE, Grimm B., Plant J. 41(2), 2005
PMID: 15634204
Functional dissection of circadian clock- and phytochrome-regulated transcription of the Arabidopsis CAB2 gene.
Anderson SL, Kay SA., Proc. Natl. Acad. Sci. U.S.A. 92(5), 1995
PMID: 7878008
Circadian clock- and phytochrome-regulated transcription is conferred by a 78 bp cis-acting domain of the Arabidopsis CAB2 promoter.
Anderson SL, Teakle GR, Martino-Catt SJ, Kay SA., Plant J. 6(4), 1994
PMID: 7987408
BioProfiling.de: analytical web portal for high-throughput cell biology.
Antonov AV., Nucleic Acids Res. 39(Web Server issue), 2011
PMID: 21609949
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.
Antonov AV, Dietmann S, Mewes HW., Genome Biol. 9(12), 2008
PMID: 19094223
PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks.
Antonov AV, Dietmann S, Rodchenkov I, Mewes HW., Proteomics 9(10), 2009
PMID: 19405022
CCancer: a bird's eye view on gene lists reported in cancer-related studies.
Dietmann S, Lee W, Wong P, Rodchenkov I, Antonov AV., Nucleic Acids Res. 38(Web Server issue), 2010
PMID: 20529879
Evidence for network evolution in an Arabidopsis interactome map.
Arabidopsis Interactome Mapping Consortium, Braun P, Carvunis AR, Charloteaux B, Dreze M, Ecker JR, Hill DE, Roth FP, Vidal M, Galli M, Balumuri P, Bautista V, Chesnut JD, Kim RC, de los Reyes C, Gilles P, Kim CJ, Matrubutham U, Mirchandani J, Olivares E, Patnaik S, Quan R, Ramaswamy G, Shinn P, Swamilingiah GM, Wu S, Ecker JR, Dreze M, Byrdsong D, Dricot A, Duarte M, Gebreab F, Gutierrez BJ, MacWilliams A, Monachello D, Mukhtar MS, Poulin MM, Reichert P, Romero V, Tam S, Waaijers S, Weiner EM, Vidal M, Hill DE, Braun P, Galli M, Carvunis AR, Cusick ME, Dreze M, Romero V, Roth FP, Tasan M, Yazaki J, Braun P, Ecker JR, Carvunis AR, Ahn YY, Barabasi AL, Charloteaux B, Chen H, Cusick ME, Dangl JL, Dreze M, Ecker JR, Fan C, Gai L, Galli M, Ghoshal G, Hao T, Hill DE, Lurin C, Milenkovic T, Moore J, Mukhtar MS, Pevzner SJ, Przulj N, Rabello S, Rietman EA, Rolland T, Roth FP, Santhanam B, Schmitz RJ, Spooner W, Stein J, Tasan M, Vandenhaute J, Ware D, Braun P, Vidal M., Science 333(6042), 2011
PMID: 21798944
Update on chloroplast research, new tools, new topics, and new trends
Armbruster, Mol. Plant 4(), 2010
A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants.
Ascenzi R, Gantt JS., Plant Mol. Biol. 34(4), 1997
PMID: 9247544
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G., Nat. Genet. 25(1), 2000
PMID: 10802651
Global switches and fine-tuning-ABA modulates plant pathogen defense.
Asselbergh B, De Vleesschauwer D, Hofte M., Mol. Plant Microbe Interact. 21(6), 2008
PMID: 18624635
The gene family encoding the Arabidopsis thaliana translation elongation factor EF-1 alpha: molecular cloning, characterization and expression.
Axelos M, Bardet C, Liboz T, Le Van Thai A, Curie C, Lescure B., Mol. Gen. Genet. 219(1-2), 1989
PMID: 2615757
Chloroplasts as source and target of cellular redox regulation: a discussion on chloroplast redox signals in the context of plant physiology.
Baier M, Dietz KJ., J. Exp. Bot. 56(416), 2005
PMID: 15863449
The acceptor availability at photosystem I and ABA control nuclear expression of 2-Cys peroxiredoxin-A in Arabidopsis thaliana.
Baier M, Stroher E, Dietz KJ., Plant Cell Physiol. 45(8), 2004
PMID: 15356325
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.
Bari R, Datt Pant B, Stitt M, Scheible WR., Plant Physiol. 141(3), 2006
PMID: 16679424
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.
Baxter CJ, Redestig H, Schauer N, Repsilber D, Patil KR, Nielsen J, Selbig J, Liu J, Fernie AR, Sweetlove LJ., Plant Physiol. 143(1), 2006
PMID: 17122072
The control of the false discovery rate in multiple testing under dependency
Benjamini, The Annals of Statistics 29(), 2001
Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED.
Bezhani S, Winter C, Hershman S, Wagner JD, Kennedy JF, Kwon CS, Pfluger J, Su Y, Wagner D., Plant Cell 19(2), 2007
PMID: 17293567
Analysis of 101 nuclear transcriptomes reveals 23 distinct regulons and their relationship to metabolism, chromosomal gene distribution and co-ordination of nuclear and plastid gene expression.
Biehl A, Richly E, Noutsos C, Salamini F, Leister D., Gene 344(), 2005
PMID: 15656970
Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases.
Bonardi V, Pesaresi P, Becker T, Schleiff E, Wagner R, Pfannschmidt T, Jahns P, Leister D., Nature 437(7062), 2005
PMID: 16237446
The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress.
Boyce JM, Knight H, Deyholos M, Openshaw MR, Galbraith DW, Warren G, Knight MR., Plant J. 34(4), 2003
PMID: 12753580
Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis.
Brautigam K, Dietzel L, Kleine T, Stroher E, Wormuth D, Dietz KJ, Radke D, Wirtz M, Hell R, Dormann P, Nunes-Nesi A, Schauer N, Fernie AR, Oliver SN, Geigenberger P, Leister D, Pfannschmidt T., Plant Cell 21(9), 2009
PMID: 19737978
A UV-B-specific signaling component orchestrates plant UV protection.
Brown BA, Cloix C, Jiang GH, Kaiserli E, Herzyk P, Kliebenstein DJ, Jenkins GI., Proc. Natl. Acad. Sci. U.S.A. 102(50), 2005
PMID: 16330762
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ., Plant J. 42(4), 2005
PMID: 15860015
Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana.
Busch W, Wunderlich M, Schoffl F., Plant J. 41(1), 2005
PMID: 15610345
A grape ASR protein involved in sugar and abscisic acid signaling.
Cakir B, Agasse A, Gaillard C, Saumonneau A, Delrot S, Atanassova R., Plant Cell 15(9), 2003
PMID: 12953118
The plant Apolipoprotein D ortholog protects Arabidopsis against oxidative stress.
Charron JB, Ouellet F, Houde M, Sarhan F., BMC Plant Biol. 8(), 2008
PMID: 18671872
Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana.
Chen KM, Holmstrom M, Raksajit W, Suorsa M, Piippo M, Aro EM., BMC Plant Biol. 10(), 2010
PMID: 20205940
Intracellular signaling from plastid to nucleus.
Chi W, Sun X, Zhang L., Annu Rev Plant Biol 64(), 2013
PMID: 23394498
Low glucose uncouples hexokinase1-dependent sugar signaling from stress and defense hormone abscisic acid and C2H4 responses in Arabidopsis.
Cho YH, Sheen J, Yoo SD., Plant Physiol. 152(3), 2009
PMID: 20034964
Growth of the plant cell wall.
Cosgrove DJ., Nat. Rev. Mol. Cell Biol. 6(11), 2005
PMID: 16261190
Modular organization and development activity of an Arabidopsis thaliana EF-1 alpha gene promoter.
Curie C, Axelos M, Bardet C, Atanassova R, Chaubet N, Lescure B., Mol. Gen. Genet. 238(3), 1993
PMID: 8492811
Evidence for a Contribution of ALA Synthesis to Plastid-To-Nucleus Signaling.
Czarnecki O, Glaßer C, Chen JG, Mayer KF, Grimm B., Front Plant Sci 3(), 2012
PMID: 23112801
The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis.
Davletova S, Schlauch K, Coutu J, Mittler R., Plant Physiol. 139(2), 2005
PMID: 16183833
CML24, regulated in expression by diverse stimuli, encodes a potential Ca2+ sensor that functions in responses to abscisic acid, daylength, and ion stress.
Delk NA, Johnson KA, Chowdhury NI, Braam J., Plant Physiol. 139(1), 2005
PMID: 16113225
Signal integration by ABA in the blue light-induced acidification of leaf pavement cells in pea (Pisum sativum L. var. Argenteum)
den, Plant Signal. Behav 2(), 2007
The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1.
Despres C, Chubak C, Rochon A, Clark R, Bethune T, Desveaux D, Fobert PR., Plant Cell 15(9), 2003
PMID: 12953119
The language of calcium signaling.
Dodd AN, Kudla J, Sanders D., Annu Rev Plant Biol 61(), 2010
PMID: 20192754
Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter.
Donald RG, Cashmore AR., EMBO J. 9(6), 1990
PMID: 2347304
Regulation of calcium signals in the nucleus by a nucleoplasmic reticulum.
Echevarria W, Leite MF, Guerra MT, Zipfel WR, Nathanson MH., Nat. Cell Biol. 5(5), 2003
PMID: 12717445
A central role of abscisic acid in drought stress protection of Agrobacterium-induced tumors on Arabidopsis.
Efetova M, Zeier J, Riederer M, Lee CW, Stingl N, Mueller M, Hartung W, Hedrich R, Deeken R., Plant Physiol. 145(3), 2007
PMID: 17827272
A universal framework for regulatory element discovery across all genomes and data types.
Elemento O, Slonim N, Tavazoie S., Mol. Cell 28(2), 2007
PMID: 17964271
Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool.
Escoubas JM, Lomas M, LaRoche J, Falkowski PG., Proc. Natl. Acad. Sci. U.S.A. 92(22), 1995
PMID: 7479759
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis.
Estavillo GM, Crisp PA, Pornsiriwong W, Wirtz M, Collinge D, Carrie C, Giraud E, Whelan J, David P, Javot H, Brearley C, Hell R, Marin E, Pogson BJ., Plant Cell 23(11), 2011
PMID: 22128124
The WRKY superfamily of plant transcription factors.
Eulgem T, Rushton PJ, Robatzek S, Somssich IE., Trends Plant Sci. 5(5), 2000
PMID: 10785665
Accumulation of the transcription factor ABA-insensitive (ABI).4 is tightly regulated post-transcriptionally
Finkelstein, J. Exp. Biol 62(), 2011
Abscisic acid signaling in seeds and seedlings.
Finkelstein RR, Gampala SS, Rock CD., Plant Cell 14 Suppl(), 2002
PMID: 12045268
Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis.
Fujiki Y, Ito M, Nishida I, Watanabe A., Plant Physiol. 124(3), 2000
PMID: 11080291
AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis.
Fujita Y, Fujita M, Satoh R, Maruyama K, Parvez MM, Seki M, Hiratsu K, Ohme-Takagi M, Shinozaki K, Yamaguchi-Shinozaki K., Plant Cell 17(12), 2005
PMID: 16284313
Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis.
Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inze D, Mittler R, Van Breusegem F., Plant Physiol. 141(2), 2006
PMID: 16603662
The high light response in Arabidopsis involves ABA signaling between vascular and bundle sheath cells.
Galvez-Valdivieso G, Fryer MJ, Lawson T, Slattery K, Truman W, Smirnoff N, Asami T, Davies WJ, Jones AM, Baker NR, Mullineaux PM., Plant Cell 21(7), 2009
PMID: 19638476
Abscisic acid (ABA) inhibits light-induced stomatal opening through calcium- and nitric oxide-mediated signaling pathways.
Garcia-Mata C, Lamattina L., Nitric Oxide 17(3-4), 2007
PMID: 17889574
Bioconductor: open software development for computational biology and bioinformatics.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J., Genome Biol. 5(10), 2004
PMID: 15461798
Current advances in abscisic acid action and signalling.
Giraudat J, Parcy F, Bertauche N, Gosti F, Leung J, Morris PC, Bouvier-Durand M, Vartanian N., Plant Mol. Biol. 26(5), 1994
PMID: 7858204
Algorithm AS 136: a k-means clustering algorithm
Hartigan, Applied Statistics 28(), 1978
Chlororespiration and grana hyperstacking: how an Arabidopsis double mutant can survive despite defects in starch biosynthesis and daily carbon export from chloroplasts.
Hausler RE, Geimer S, Kunz HH, Schmitz J, Dormann P, Bell K, Hetfeld S, Guballa A, Flugge UI., Plant Physiol. 149(1), 2008
PMID: 18978072
The interface between metabolic and stress signalling
Hey, Ann. Bot. (Oxford, UK) 105(), 2010
Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.
Himmelbach A, Hoffmann T, Leube M, Hohener B, Grill E., EMBO J. 21(12), 2002
PMID: 12065416
Connecting oxidative stress, auxin, and cell cycle regulation through a plant mitogen-activated protein kinase pathway.
Hirt H., Proc. Natl. Acad. Sci. U.S.A. 97(6), 2000
PMID: 10716978
Global identification of DELLA target genes during Arabidopsis flower development.
Hou X, Hu WW, Shen L, Lee LY, Tao Z, Han JH, Yu H., Plant Physiol. 147(3), 2008
PMID: 18502975
Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana.
Hsu JL, Wang LY, Wang SY, Lin CH, Ho KC, Shi FK, Chang IF., Proteome Sci 7(), 2009
PMID: 19900291
Transcriptome analysis of auxin-regulated genes of Arabidopsis thaliana.
Huang YC, Chang YL, Hsu JJ, Chuang HW., Gene 420(2), 2008
PMID: 18577427
The chloroplast import receptor Toc90 partially restores the accumulation of Toc159 client proteins in the Arabidopsis thaliana ppi2 mutant.
Infanger S, Bischof S, Hiltbrunner A, Agne B, Baginsky S, Kessler F., Mol Plant 4(2), 2011
PMID: 21220583
Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP., Biostatistics 4(2), 2003
PMID: 12925520
Identification of a cis-regulatory region of a gene in Arabidopsis thaliana whose induction by dehydration is mediated by abscisic acid and requires protein synthesis.
Iwasaki T, Yamaguchi-Shinozaki K, Shinozaki K., Mol. Gen. Genet. 247(4), 1995
PMID: 7770045
Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.
Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Hulskamp M, Larkin J, Schnittger A., Plant Physiol. 148(3), 2008
PMID: 18805951
Salt-stress-induced ABA accumulation is more sensitively triggered in roots than in shoots.
Jia W, Wang Y, Zhang S, Zhang J., J. Exp. Bot. 53(378), 2002
PMID: 12379787
Comparative transcriptional profiling and evolutionary analysis of the GRAM domain family in eukaryotes.
Jiang SY, Ramamoorthy R, Ramachandran S., Dev. Biol. 314(2), 2007
PMID: 18201690
MicroRNAS and their regulatory roles in plants.
Jones-Rhoades MW, Bartel DP, Bartel B., Annu Rev Plant Biol 57(), 2006
PMID: 16669754
SnRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling in Arabidopsis thaliana.
Jossier M, Bouly JP, Meimoun P, Arjmand A, Lessard P, Hawley S, Grahame Hardie D, Thomas M., Plant J. 59(2), 2009
PMID: 19302419
Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway?
Jung HS, Chory J., Plant Physiol. 152(2), 2009
PMID: 19933385
Fatty Acid-derived signals in plant defense.
Kachroo A, Kachroo P., Annu Rev Phytopathol 47(), 2009
PMID: 19400642
linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
Kalinka AT, Tomancak P., Bioinformatics 27(14), 2011
PMID: 21596792
KEGG: kyoto encyclopedia of genes and genomes.
Kanehisa M, Goto S., Nucleic Acids Res. 28(1), 2000
PMID: 10592173
Rapid transcriptome changes induced by cytosolic Ca2+ transients reveal ABRE-related sequences as Ca2+-responsive cis elements in Arabidopsis.
Kaplan B, Davydov O, Knight H, Galon Y, Knight MR, Fluhr R, Fromm H., Plant Cell 18(10), 2006
PMID: 16980540
Overexpression of spermidine synthase enhances tolerance to multiple environmental stresses and up-regulates the expression of various stress-regulated genes in transgenic Arabidopsis thaliana.
Kasukabe Y, He L, Nada K, Misawa S, Ihara I, Tachibana S., Plant Cell Physiol. 45(6), 2004
PMID: 15215506
IntAct--open source resource for molecular interaction data.
Kerrien S, Alam-Faruque Y, Aranda B, Bancarz I, Bridge A, Derow C, Dimmer E, Feuermann M, Friedrichsen A, Huntley R, Kohler C, Khadake J, Leroy C, Liban A, Lieftink C, Montecchi-Palazzi L, Orchard S, Risse J, Robbe K, Roechert B, Thorneycroft D, Zhang Y, Apweiler R, Hermjakob H., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17145710
Plastid signalling to the nucleus: messengers still lost in the mists?
Kleine T, Voigt C, Leister D., Trends Genet. 25(4), 2009
PMID: 19303165
Signals from chloroplasts converge to regulate nuclear gene expression.
Koussevitzky S, Nott A, Mockler TC, Hong F, Sachetto-Martins G, Surpin M, Lim J, Mittler R, Chory J., Science 316(5825), 2007
PMID: 17395793
Cytokinin and abscisic acid in regulation of chloroplast protein gene expression and photosynthetic activity
Kusnetsov, 1996
GUN4, a regulator of chlorophyll synthesis and intracellular signaling
Larkin, Science 7(), 2003
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.
Lee BH, Henderson DA, Zhu JK., Plant Cell 17(11), 2005
PMID: 16214899
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana.
Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY., Nat. Biotechnol. 28(2), 2010
PMID: 20118918
EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana.
Lee KP, Kim C, Landgraf F, Apel K., Proc. Natl. Acad. Sci. U.S.A. 104(24), 2007
PMID: 17540731
Retrograde signaling in plants: from simple to complex scenarios.
Leister D., Front Plant Sci 3(), 2012
PMID: 22723802
Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions.
Leister D, Wang X, Haberer G, Mayer KF, Kleine T., Plant Physiol. 157(1), 2011
PMID: 21775496
Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant.
Leonhardt N, Kwak JM, Robert N, Waner D, Leonhardt G, Schroeder JI., Plant Cell 16(3), 2004
PMID: 14973164
A contribution to identification of novel regulators of plant response to sulfur deficiency: characteristics of a tobacco gene UP9C, its protein product and the effects of UP9C silencing.
Lewandowska M, Wawrzynska A, Moniuszko G, Lukomska J, Zientara K, Piecho M, Hodurek P, Zhukov I, Liszewska F, Nikiforova V, Sirko A., Mol Plant 3(2), 2010
PMID: 20147370
AKINbeta1 is involved in the regulation of nitrogen metabolism and sugar signaling in Arabidopsis.
Li XF, Li YJ, An YH, Xiong LJ, Shao XH, Wang Y, Sun Y., J Integr Plant Biol 51(5), 2009
PMID: 19397750
Plant expansins are a complex multigene family with an ancient evolutionary origin.
Li Y, Darley CP, Ongaro V, Fleming A, Schipper O, Baldauf SL, McQueen-Mason SJ., Plant Physiol. 128(3), 2002
PMID: 11891242
Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine.
Li Y, Lee KK, Walsh S, Smith C, Hadingham S, Sorefan K, Cawley G, Bevan MW., Genome Res. 16(3), 2006
PMID: 16424108
Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana.
Louvet R, Cavel E, Gutierrez L, Guenin S, Roger D, Gillet F, Guerineau F, Pelloux J., Planta 224(4), 2006
PMID: 16622707
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
Martin, Proc. Natl Acad. Sci. U S A 17(), 2002
Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes.
Martinez IM, Chrispeels MJ., Plant Cell 15(2), 2003
PMID: 12566592
AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis.
Matsui K, Umemura Y, Ohme-Takagi M., Plant J. 55(6), 2008
PMID: 18532977
Reactome knowledgebase of human biological pathways and processes.
Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18981052
Primary and secondary endosymbiosis and the origin of plastids
McFadden, J. Phycol 37(), 2001
Oxidative stress, antioxidants and stress tolerance.
Mittler R., Trends Plant Sci. 7(9), 2002
PMID: 12234732
The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis.
Mochizuki N, Tanaka R, Tanaka A, Masuda T, Nagatani A., Proc. Natl. Acad. Sci. U.S.A. 105(39), 2008
PMID: 18818313
The biosynthesis of D-Galacturonate in plants. functional cloning and characterization of a membrane-anchored UDP-D-Glucuronate 4-epimerase from Arabidopsis.
Molhoj M, Verma R, Reiter WD., Plant Physiol. 135(3), 2004
PMID: 15247385
Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation.
Moulin M, McCormac AC, Terry MJ, Smith AG., Proc. Natl. Acad. Sci. U.S.A. 105(39), 2008
PMID: 18818314
A revised medium for rapid growth and bioassays with tobacco tissue cultures
Murashige, Physiol. Plant 15(), 1962
Microarray analysis of genes that respond to gamma-irradiation in Arabidopsis.
Nagata T, Yamada H, Du Z, Todoriki S, Kikuchi S., J. Agric. Food Chem. 53(4), 2005
PMID: 15713015
Reactive oxygen species during plant-microorganism early interactions.
Nanda AK, Andrio E, Marino D, Pauly N, Dunand C., J Integr Plant Biol 52(2), 2010
PMID: 20377681
EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family.
Nawrath C, Heck S, Parinthawong N, Metraux JP., Plant Cell 14(1), 2002
PMID: 11826312
Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control.
Nicolai M, Roncato MA, Canoy AS, Rouquie D, Sarda X, Freyssinet G, Robaglia C., Plant Physiol. 141(2), 2006
PMID: 16632591
Galactinol and raffinose constitute a novel function to protect plants from oxidative damage.
Nishizawa A, Yabuta Y, Shigeoka S., Plant Physiol. 147(3), 2008
PMID: 18502973
Evidence for chloroplast control of external Ca2+-induced cytosolic Ca2+ transients and stomatal closure.
Nomura H, Komori T, Kobori M, Nakahira Y, Shiina T., Plant J. 53(6), 2007
PMID: 18088326
Chloroplast-mediated activation of plant immune signalling in Arabidopsis.
Nomura H, Komori T, Uemura S, Kanda Y, Shimotani K, Nakai K, Furuichi T, Takebayashi K, Sugimoto T, Sano S, Suwastika IN, Fukusaki E, Yoshioka H, Nakahira Y, Shiina T., Nat Commun 3(), 2012
PMID: 22735454
Plastid-to-nucleus retrograde signaling.
Nott A, Jung HS, Koussevitzky S, Chory J., Annu Rev Plant Biol 57(), 2006
PMID: 16669780
Efficient acclimation of the chloroplast antioxidant defence of Arabidopsis thaliana leaves in response to a 10- or 100-fold light increment and the possible involvement of retrograde signals.
Oelze ML, Vogel MO, Alsharafa K, Kahmann U, Viehhauser A, Maurino VG, Dietz KJ., J. Exp. Bot. 63(3), 2011
PMID: 22131159
The isochorismate pathway is negatively regulated by salicylic acid signaling in O3-exposed Arabidopsis.
Ogawa D, Nakajima N, Tamaoki M, Aono M, Kubo A, Kamada H, Saji H., Planta 226(5), 2007
PMID: 17588170
Leucine-rich repeat receptor-like kinase1 is a key membrane-bound regulator of abscisic acid early signaling in Arabidopsis.
Osakabe Y, Maruyama K, Seki M, Satou M, Shinozaki K, Yamaguchi-Shinozaki K., Plant Cell 17(4), 2005
PMID: 15772289
Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
Osuna D, Usadel B, Morcuende R, Gibon Y, Blasing OE, Hohne M, Gunter M, Kamlage B, Trethewey R, Scheible WR, Stitt M., Plant J. 49(3), 2007
PMID: 17217462
Plastid redox state and sugars: interactive regulators of nuclear-encoded photosynthetic gene expression.
Oswald O, Martin T, Dominy PJ, Graham IA., Proc. Natl. Acad. Sci. U.S.A. 98(4), 2001
PMID: 11172073
Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana.
Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, Smith A, Yu G, Theologis A., Plant Cell 17(12), 2005
PMID: 16284307
Role of magnesium chelatase activity in the early steps of the tetrapyrrole biosynthetic pathway.
Papenbrock J, Mock HP, Tanaka R, Kruse E, Grimm B., Plant Physiol. 122(4), 2000
PMID: 10759511
Complementary interactions between oxidative stress and auxins control plant growth responses at plant, organ, and cellular level.
Pasternak T, Potters G, Caubergs R, Jansen MA., J. Exp. Bot. 56(418), 2005
PMID: 15996987
Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells.
Pei ZM, Murata Y, Benning G, Thomine S, Klusener B, Allen GJ, Grill E, Schroeder JI., Nature 406(6797), 2000
PMID: 10963598
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development
Péret, Plant Cell 24(), 2012
Arabidopsis STN7 kinase provides a link between short- and long-term photosynthetic acclimation.
Pesaresi P, Hertle A, Pribil M, Kleine T, Wagner R, Strissel H, Ihnatowicz A, Bonardi V, Scharfenberg M, Schneider A, Pfannschmidt T, Leister D., Plant Cell 21(8), 2009
PMID: 19706797
Plastidial retrograde signalling--a true "plastid factor" or just metabolite signatures?
Pfannschmidt T., Trends Plant Sci. 15(8), 2010
PMID: 20580596
Plastid signalling to the nucleus and beyond.
Pogson BJ, Woo NS, Forster B, Small ID., Trends Plant Sci. 13(11), 2008
PMID: 18838332
Why have organelles retained genomes?
Race HL, Herrmann RG, Martin W., Trends Genet. 15(9), 1999
PMID: 10461205
Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants.
Ramel F, Birtic S, Ginies C, Soubigou-Taconnat L, Triantaphylides C, Havaux M., Proc. Natl. Acad. Sci. U.S.A. 109(14), 2012
PMID: 22431637
Glycine-rich proteins as structural components of plant cell walls.
Ringli C, Keller B, Ryser U., Cell. Mol. Life Sci. 58(10), 2001
PMID: 11693524
Glutathione peroxidase genes in Arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways.
Rodriguez Milla MA, Maurer A, Rodriguez Huete A, Gustafson JP., Plant J. 36(5), 2003
PMID: 14617062
Sugar sensing and signaling in plants: conserved and novel mechanisms.
Rolland F, Baena-Gonzalez E, Sheen J., Annu Rev Plant Biol 57(), 2006
PMID: 16669778
Sugar and ABA response pathways and the control of gene expression.
Rook F, Hadingham SA, Li Y, Bevan MW., Plant Cell Environ. 29(3), 2006
PMID: 17080596
UDP-glucose 4-epimerase isoforms UGE2 and UGE4 cooperate in providing UDP-galactose for cell wall biosynthesis and growth of Arabidopsis thaliana.
Rosti J, Barton CJ, Albrecht S, Dupree P, Pauly M, Findlay K, Roberts K, Seifert GJ., Plant Cell 19(5), 2007
PMID: 17496119
The role of glutathione in photosynthetic organisms: emerging functions for glutaredoxins and glutathionylation.
Rouhier N, Lemaire SD, Jacquot JP., Annu Rev Plant Biol 59(), 2008
PMID: 18444899
Growth and stomata development of Arabidopsis hypocotyls are controlled by gibberellins and modulated by ethylene and auxins.
Saibo NJ, Vriezen WH, Beemster GT, Van Der Straeten D., Plant J. 33(6), 2003
PMID: 12631324
ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis.
Sanchez JP, Duque P, Chua NH., Plant J. 38(3), 2004
PMID: 15086800
Complete structure of the chloroplast genome of Arabidopsis thaliana.
Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S., DNA Res. 6(5), 1999
PMID: 10574454
Nonenzymatic lipid peroxidation reprograms gene expression and activates defense markers in Arabidopsis tocopherol-deficient mutants.
Sattler SE, Mene-Saffrane L, Farmer EE, Krischke M, Mueller MJ, DellaPenna D., Plant Cell 18(12), 2006
PMID: 17194769
TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG.
Schindler U, Beckmann H, Cashmore AR., Plant Cell 4(10), 1992
PMID: 1446171
Trehalose mediated growth inhibition of Arabidopsis seedlings is due to trehalose-6-phosphate accumulation.
Schluepmann H, van Dijken A, Aghdasi M, Wobbes B, Paul M, Smeekens S., Plant Physiol. 135(2), 2004
PMID: 15181209
Defects in leaf carbohydrate metabolism compromise acclimation to high light and lead to a high chlorophyll fluorescence phenotype in Arabidopsis thaliana.
Schmitz J, Schottler MA, Krueger S, Geimer S, Schneider A, Kleine T, Leister D, Bell K, Flugge UI, Hausler RE., BMC Plant Biol. 12(), 2012
PMID: 22248311
An Arabidopsis thaliana knock-out mutant of the chloroplast triose phosphate/phosphate translocator is severely compromised only when starch synthesis, but not starch mobilisation is abolished.
Schneider A, Hausler RE, Kolukisaoglu U, Kunze R, van der Graaff E, Schwacke R, Catoni E, Desimone M, Flugge UI., Plant J. 32(5), 2002
PMID: 12472685
Characterization of the VIER F-BOX PROTEINE genes from Arabidopsis reveals their importance for plant growth and development.
Schwager KM, Calderon-Villalobos LI, Dohmann EM, Willige BC, Knierer S, Nill C, Schwechheimer C., Plant Cell 19(4), 2007
PMID: 17435085
The impact of impaired mitochondrial function on retrograde signalling: a meta-analysis of transcriptomic responses.
Schwarzlander M, Konig AC, Sweetlove LJ, Finkemeier I., J. Exp. Bot. 63(4), 2011
PMID: 22131156
Galactose biosynthesis in Arabidopsis: genetic evidence for substrate channeling from UDP-D-galactose into cell wall polymers.
Seifert GJ, Barber C, Wells B, Dolan L, Roberts K., Curr. Biol. 12(21), 2002
PMID: 12419184
The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes.
Shaikhali J, Heiber I, Seidel T, Stroher E, Hiltscher H, Birkmann S, Dietz KJ, Baier M., BMC Plant Biol. 8(), 2008
PMID: 18439303
Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis.
Shaikhali J, Noren L, de Dios Barajas-Lopez J, Srivastava V, Konig J, Sauer UH, Wingsle G, Dietz KJ, Strand A., J. Biol. Chem. 287(33), 2012
PMID: 22718771
Exploiting the wild crucifer Thlaspi arvense to identify conserved and novel genes expressed during a plant's response to cold stress.
Sharma N, Cram D, Huebert T, Zhou N, Parkin IA., Plant Mol. Biol. 63(2), 2006
PMID: 16972165
The lateral organ boundaries gene defines a novel, plant-specific gene family.
Shuai B, Reynaga-Pena CG, Springer PS., Plant Physiol. 129(2), 2002
PMID: 12068116
Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence.
Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K, Yamaguchi-Shinozaki K., Plant J. 33(2), 2003
PMID: 12535340
Gene expression in response to abscisic acid and osmotic stress.
Skriver K, Mundy J., Plant Cell 2(6), 1990
PMID: 2152172
SUGAR-INDUCED SIGNAL TRANSDUCTION IN PLANTS.
Smeekens S., Annu. Rev. Plant Physiol. Plant Mol. Biol. 51(), 2000
PMID: 15012186
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
Smyth, Stat. Appl. Genet. Mol. Biol 3(), 2004
The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions.
Soderman E, Hjellstrom M, Fahleson J, Engstrom P., Plant Mol. Biol. 40(6), 1999
PMID: 10527431
In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1.
Son O, Cho SK, Kim SJ, Kim WT., Biochem. Biophys. Res. Commun. 393(3), 2010
PMID: 20152813
DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression.
Sottosanto JB, Gelli A, Blumwald E., Plant J. 40(5), 2004
PMID: 15546358
NADPH-dependent thioredoxin reductase and 2-Cys peroxiredoxins are needed for the protection of Mg-protoporphyrin monomethyl ester cyclase.
Stenbaek A, Hansson A, Wulff RP, Hansson M, Dietz KJ, Jensen PE., FEBS Lett. 582(18), 2008
PMID: 18625226
Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation.
Stettler M, Eicke S, Mettler T, Messerli G, Hortensteiner S, Zeeman SC., Mol Plant 2(6), 2009
PMID: 19946617
One, two, three: nature's tool box for building plastids.
Stoebe B, Maier UG., Protoplasma 219(3-4), 2002
PMID: 12099212
Induction of the AOX1D isoform of alternative oxidase in A. thaliana T-DNA insertion lines lacking isoform AOX1A is insufficient to optimize photosynthesis when treated with antimycin A.
Strodtkotter I, Padmasree K, Dinakar C, Speth B, Niazi PS, Wojtera J, Voss I, Do PT, Nunes-Nesi A, Fernie AR, Linke V, Raghavendra AS, Scheibe R., Mol Plant 2(2), 2009
PMID: 19825614
The calcium/calmodulin-dependent protein phosphatase calcineurin is the major Elk-1 phosphatase.
Sugimoto T, Stewart S, Guan KL., J. Biol. Chem. 272(47), 1997
PMID: 9367995
A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus.
Sun X, Feng P, Xu X, Guo H, Ma J, Chi W, Lin R, Lu C, Zhang L., Nat Commun 2(), 2011
PMID: 21934661
Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development.
Susek RE, Ausubel FM, Chory J., Cell 74(5), 1993
PMID: 7690685
Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c.
Suzuki N, Rizhsky L, Liang H, Shuman J, Shulaev V, Mittler R., Plant Physiol. 139(3), 2005
PMID: 16244138
The auxin influx carrier LAX3 promotes lateral root emergence.
Swarup K, Benkova E, Swarup R, Casimiro I, Peret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque MP, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones JD, Taylor CG, Schachtman DP, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze L, Bennett MJ., Nat. Cell Biol. 10(8), 2008
PMID: 18622388
Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis.
Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW., BMC Plant Biol. 7(), 2007
PMID: 17956627
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes.
Timmis JN, Ayliffe MA, Huang CY, Martin W., Nat. Rev. Genet. 5(2), 2004
PMID: 14735123
Plant interstitial telomere motifs participate in the control of gene expression in root meristems.
Tremousaygue D, Manevski A, Bardet C, Lescure N, Lescure B., Plant J. 20(5), 1999
PMID: 10652127
The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana
Ugartechea-Chirino, Ann. Bot. (Oxford, UK) 105(), 2010
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes.
Usadel B, Blasing OE, Gibon Y, Retzlaff K, Hohne M, Gunther M, Stitt M., Plant Physiol. 146(4), 2008
PMID: 18305208
The auxin influx carriers AUX1 and LAX3 are involved in auxin-ethylene interactions during apical hook development in Arabidopsis thaliana seedlings.
Vandenbussche F, Petrasek J, Zadnikova P, Hoyerova K, Pesek B, Raz V, Swarup R, Bennett M, Zazimalova E, Benkova E, Van Der Straeten D., Development 137(4), 2010
PMID: 20110325
Trehalose-6-phosphate phosphatases from Arabidopsis thaliana: identification by functional complementation of the yeast tps2 mutant.
Vogel G, Aeschbacher RA, Muller J, Boller T, Wiemken A., Plant J. 13(5), 1998
PMID: 9681009
The long-term response to fluctuating light quality is an important and distinct light acclimation mechanism that supports survival of Arabidopsis thaliana under low light conditions.
Wagner R, Dietzel L, Brautigam K, Fischer W, Pfannschmidt T., Planta 228(4), 2008
PMID: 18542996
ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis.
Wang C, Marshall A, Zhang D, Wilson ZA., Plant Physiol. 158(4), 2012
PMID: 22345505
The interaction of light and abscisic acid in the regulation of plant gene expression.
Weatherwax SC, Ong MS, Degenhardt J, Bray EA, Tobin EM., Plant Physiol. 111(2), 1996
PMID: 8787022
Coordination of gene expression between organellar and nuclear genomes.
Woodson JD, Chory J., Nat. Rev. Genet. 9(5), 2008
PMID: 18368053
Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants
Woodson, Curr. Biol 24(), 2011
Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes.
Xiao Y, Savchenko T, Baidoo EE, Chehab WE, Hayden DM, Tolstikov V, Corwin JA, Kliebenstein DJ, Keasling JD, Dehesh K., Cell 149(7), 2012
PMID: 22726439
Transcriptome analysis reveals specific modulation of abscisic acid signaling by ROP10 small GTPase in Arabidopsis.
Xin Z, Zhao Y, Zheng ZL., Plant Physiol. 139(3), 2005
PMID: 16258012
Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.
Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y., BMC Genomics 9(), 2008
PMID: 19021904
The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana.
Yamaguchi-Shinozaki K, Shinozaki K., Mol. Gen. Genet. 238(1-2), 1993
PMID: 8479424
A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress.
Yamaguchi-Shinozaki K, Shinozaki K., Plant Cell 6(2), 1994
PMID: 8148648
Genomics approach to abscisic acid- and gibberellin-responsive genes in rice.
Yazaki J, Kishimoto N, Nagata Y, Ishikawa M, Fujii F, Hashimoto A, Shimbo K, Shimatani Z, Kojima K, Suzuki K, Yamamoto M, Honda S, Endo A, Yoshida Y, Sato Y, Takeuchi K, Toyoshima K, Miyamoto C, Wu J, Sasaki T, Sakata K, Yamamoto K, Iba K, Oda T, Otomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S., DNA Res. 10(6), 2003
PMID: 15029956
Metabolism and physiology of abscisic acid
Zeevaart, Annu. Rev. Plant Physiol. Plant Mol. Biol 39(), 1988
The plastid hexokinase pHXK: a node of convergence for sugar and plastid signals in Arabidopsis.
Zhang ZW, Yuan S, Xu F, Yang H, Zhang NH, Cheng J, Lin HH., FEBS Lett. 584(16), 2010
PMID: 20650273
SIR1, an upstream component in auxin signaling identified by chemical genetics.
Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J., Science 301(5636), 2003
PMID: 12893885
Bestatin, an inhibitor of aminopeptidases, provides a chemical genetics approach to dissect jasmonate signaling in Arabidopsis.
Zheng W, Zhai Q, Sun J, Li CB, Zhang L, Li H, Zhang X, Li S, Xu Y, Jiang H, Wu X, Li C., Plant Physiol. 141(4), 2006
PMID: 16798948
Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action.
Zik M, Irish VF., Plant Cell 15(1), 2003
PMID: 12509532
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 24719466
PubMed | Europe PMC

Suchen in

Google Scholar