Genome Sequence and Assembly of Bos indicus

Canavez FC, Luche DD, Stothard P, Leite KRM, Sousa-Canavez JM, Plastow G, Meidanis J, Souza MA, Feijão P, Moore SS, Camara-Lopes LH (2012)
Journal of Heredity 103(3): 342-348.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Canavez, F. C.; Luche, D. D.; Stothard, P.; Leite, K. R. M.; Sousa-Canavez, J. M.; Plastow, G.; Meidanis, J.; Souza, M. A.; Feijão, PedroUniBi; Moore, S. S.; Camara-Lopes, L. H.
Journal of Heredity
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Canavez FC, Luche DD, Stothard P, et al. Genome Sequence and Assembly of Bos indicus. Journal of Heredity. 2012;103(3):342-348.
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., et al. (2012). Genome Sequence and Assembly of Bos indicus. Journal of Heredity, 103(3), 342-348. doi:10.1093/jhered/esr153
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., et al. 2012. “Genome Sequence and Assembly of Bos indicus”. Journal of Heredity 103 (3): 342-348.
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., Souza, M. A., Feijão, P., Moore, S. S., et al. (2012). Genome Sequence and Assembly of Bos indicus. Journal of Heredity 103, 342-348.
Canavez, F.C., et al., 2012. Genome Sequence and Assembly of Bos indicus. Journal of Heredity, 103(3), p 342-348.
F.C. Canavez, et al., “Genome Sequence and Assembly of Bos indicus”, Journal of Heredity, vol. 103, 2012, pp. 342-348.
Canavez, F.C., Luche, D.D., Stothard, P., Leite, K.R.M., Sousa-Canavez, J.M., Plastow, G., Meidanis, J., Souza, M.A., Feijão, P., Moore, S.S., Camara-Lopes, L.H.: Genome Sequence and Assembly of Bos indicus. Journal of Heredity. 103, 342-348 (2012).
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., Souza, M. A., Feijão, Pedro, Moore, S. S., and Camara-Lopes, L. H. “Genome Sequence and Assembly of Bos indicus”. Journal of Heredity 103.3 (2012): 342-348.

36 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis).
Mukherjee S, Cai Z, Mukherjee A, Longkumer I, Mech M, Vupru K, Khate K, Rajkhowa C, Mitra A, Guldbrandtsen B, Lund MS, Sahana G., BMC Genomics 20(1), 2019
PMID: 31357931
Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle.
Weinroth MD, Scott HM, Norby B, Loneragan GH, Noyes NR, Rovira P, Doster E, Yang X, Woerner DR, Morley PS, Belk KE., Appl Environ Microbiol 84(13), 2018
PMID: 29728379
De novo assembly of haplotype-resolved genomes with trio binning.
Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM., Nat Biotechnol (), 2018
PMID: 30346939
Whole genome sequencing of Guzerá cattle reveals genetic variants in candidate genes for production, disease resistance, and heat tolerance.
Rosse IC, Assis JG, Oliveira FS, Leite LR, Araujo F, Zerlotini A, Volpini A, Dominitini AJ, Lopes BC, Arbex WA, Machado MA, Peixoto MG, Verneque RS, Martins MF, Coimbra RS, Silva MV, Oliveira G, Carvalho MR., Mamm Genome 28(1-2), 2017
PMID: 27853861
Genome-Wide microRNA Binding Site Variation between Extinct Wild Aurochs and Modern Cattle Identifies Candidate microRNA-Regulated Domestication Genes.
Braud M, Magee DA, Park SD, Sonstegard TS, Waters SM, MacHugh DE, Spillane C., Front Genet 8(), 2017
PMID: 28197171
Climate Adaptation of Tropical Cattle.
Barendse W., Annu Rev Anim Biosci 5(), 2017
PMID: 28199171
The genome landscape of indigenous African cattle.
Kim J, Hanotte O, Mwai OA, Dessie T, Bashir S, Diallo B, Agaba M, Kim K, Kwak W, Sung S, Seo M, Jeong H, Kwon T, Taye M, Song KD, Lim D, Cho S, Lee HJ, Yoon D, Oh SJ, Kemp S, Lee HK, Kim H., Genome Biol 18(1), 2017
PMID: 28219390
Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild.
Wecek K, Hartmann S, Paijmans JL, Taron U, Xenikoudakis G, Cahill JA, Heintzman PD, Shapiro B, Baryshnikov G, Bunevich AN, Crees JJ, Dobosz R, Manaserian N, Okarma H, Tokarska M, Turvey ST, Wójcik JM, Zyla W, Szymura JM, Hofreiter M, Barlow A., Mol Biol Evol 34(3), 2017
PMID: 28007976
Impact of "Raised without Antibiotics" Beef Cattle Production Practices on Occurrences of Antimicrobial Resistance.
Vikram A, Rovira P, Agga GE, Arthur TM, Bosilevac JM, Wheeler TL, Morley PS, Belk KE, Schmidt JW., Appl Environ Microbiol 83(22), 2017
PMID: 28887421
Draft genome of the gayal, Bos frontalis.
Wang MS, Zeng Y, Wang X, Nie WH, Wang JH, Su WT, Otecko NO, Xiong ZJ, Wang S, Qu KX, Yan SQ, Yang MM, Wang W, Dong Y, Wu DD, Zhang YP., Gigascience 6(11), 2017
PMID: 29048483
Genetic architecture and selection of Chinese cattle revealed by whole genome resequencing.
Mei C, Wang H, Liao Q, Wang L, Cheng G, Wang H, Zhao C, Zhao S, Song J, Guang X, Liu GE, Li A, Wu X, Wang C, Fang X, Zhao X, Smith SB, Yang W, Tian W, Gui L, Zhang Y, Hill RA, Jiang Z, Xin Y, Jia C, Sun X, Wang S, Yang H, Wang J, Zhu W, Zan L., Mol Biol Evol (), 2017
PMID: 29294071
Tropically adapted cattle of Africa: perspectives on potential role of copy number variations.
Wang MD, Dzama K, Rees DJ, Muchadeyi FC., Anim Genet 47(2), 2016
PMID: 26644080
Whole-genome sequencing of the endangered bovine species Gayal (Bos frontalis) provides new insights into its genetic features.
Mei C, Wang H, Zhu W, Wang H, Cheng G, Qu K, Guang X, Li A, Zhao C, Yang W, Wang C, Xin Y, Zan L., Sci Rep 6(), 2016
PMID: 26806430
Deciphering the Wisent Demographic and Adaptive Histories from Individual Whole-Genome Sequences.
Gautier M, Moazami-Goudarzi K, Levéziel H, Parinello H, Grohs C, Rialle S, Kowalczyk R, Flori L., Mol Biol Evol 33(11), 2016
PMID: 27436010
The Genome 10K Project: a way forward.
Koepfli KP, Paten B, Genome 10K Community of Scientists, O'Brien SJ., Annu Rev Anim Biosci 3(), 2015
PMID: 25689317
Genomic organization and evolution of ruminant lysozyme c genes.
Irwin DM., Dongwuxue Yanjiu 36(1), 2015
PMID: 25730456
Comparative Study on the Genetic Diversity of GHR Gene in Tibetan Cattle and Holstein Cows.
Deng F, Xia C, Jia X, Song T, Liu J, Lai SJ, Chen SY., Anim Biotechnol 26(3), 2015
PMID: 25927168
Admixture mapping of tuberculosis and pigmentation-related traits in an African-European hybrid cattle population.
Kassahun Y, Mattiangeli V, Ameni G, Hailu E, Aseffa A, Young DB, Hewinson RG, Vordermeier HM, Bradley DG., Front Genet 6(), 2015
PMID: 26124773
The Differential Expression of Immune Genes between Water Buffalo and Yellow Cattle Determines Species-Specific Susceptibility to Schistosoma japonicum Infection.
Yang J, Fu Z, Hong Y, Wu H, Jin Y, Zhu C, Li H, Lu K, Shi Y, Yuan C, Cheng G, Feng X, Liu J, Lin J., PLoS One 10(6), 2015
PMID: 26125181
African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World.
Mwai O, Hanotte O, Kwon YJ, Cho S., Asian-Australas J Anim Sci 28(7), 2015
PMID: 26104394
Impact of Parental Bos taurus and Bos indicus Origins on Copy Number Variation in Traditional Chinese Cattle Breeds.
Zhang L, Jia S, Plath M, Huang Y, Li C, Lei C, Zhao X, Chen H., Genome Biol Evol 7(8), 2015
PMID: 26260653
Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.
Boussaha M, Esquerré D, Barbieri J, Djari A, Pinton A, Letaief R, Salin G, Escudié F, Roulet A, Fritz S, Samson F, Grohs C, Bernard M, Klopp C, Boichard D, Rocha D., PLoS One 10(8), 2015
PMID: 26317361
Sequencing and annotated analysis of full genome of Holstein breed bull.
Kõks S, Reimann E, Lilleoja R, Lättekivi F, Salumets A, Reemann P, Jaakma Ü., Mamm Genome 25(7-8), 2014
PMID: 24770584
Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary.
Molnár J, Nagy T, Stéger V, Tóth G, Marincs F, Barta E., BMC Genomics 15(), 2014
PMID: 25193519
Breeding and Genetics Symposium: networks and pathways to guide genomic selection.
Snelling WM, Cushman RA, Keele JW, Maltecca C, Thomas MG, Fortes MR, Reverter A., J Anim Sci 91(2), 2013
PMID: 23097404
Maternal and paternal genomes differentially affect myofibre characteristics and muscle weights of bovine fetuses at midgestation.
Xiang R, Ghanipoor-Samami M, Johns WH, Eindorf T, Rutley DL, Kruk ZA, Fitzsimmons CJ, Thomsen DA, Roberts CT, Burns BM, Anderson GI, Greenwood PL, Hiendleder S., PLoS One 8(1), 2013
PMID: 23341941
A population genetics view of animal domestication.
Larson G, Burger J., Trends Genet 29(4), 2013
PMID: 23415592
New World cattle show ancestry from multiple independent domestication events.
McTavish EJ, Decker JE, Schnabel RD, Taylor JF, Hillis DM., Proc Natl Acad Sci U S A 110(15), 2013
PMID: 23530234
Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.
Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D., BMC Genomics 14(), 2013
PMID: 23651547
Livestock and the promise of genomics.
Ludu JS, Plastow GS., Genome 56(10), 2013
PMID: 24237336
Sequencing and annotated analysis of the Holstein cow genome.
Kõks S, Lilleoja R, Reimann E, Salumets A, Reemann P, Jaakma Ü., Mamm Genome 24(7-8), 2013
PMID: 23893136
Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection.
Liao X, Peng F, Forni S, McLaren D, Plastow G, Stothard P., Genome 56(10), 2013
PMID: 24237340
Evolutionary history of bovine endogenous retroviruses in the Bovidae family.
Garcia-Etxebarria K, Jugo BM., BMC Evol Biol 13(), 2013
PMID: 24256121
Understanding and predicting complex traits: knowledge from cattle.
Kemper KE, Goddard ME., Hum Mol Genet 21(r1), 2012
PMID: 22899652

16 References

Daten bereitgestellt von Europe PubMed Central.

AUTHOR UNKNOWN, Nucleic Acids Res. 5(), 1997
Mitochondrial diversity and the origins of African and European cattle.
Bradley DG, MacHugh DE, Cunningham P, Loftus RT., Proc. Natl. Acad. Sci. U.S.A. 93(10), 1996
PMID: 8643540
The cattle genome reveals its secrets.
Burt DW., J. Biol. 8(4), 2009
PMID: 19439025

AUTHOR UNKNOWN, J. Hum. Evol. 21(), 2006
Bovine Genome Database: integrated tools for genome annotation and discovery.
Childers CP, Reese JT, Sundaram JP, Vile DC, Dickens CM, Childs KL, Salih H, Bennett AK, Hagen DE, Adelson DL, Elsik CG., Nucleic Acids Res. 39(Database issue), 2010
PMID: 21123190
The genome sequence of taurine cattle: a window to ruminant biology and evolution.
Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Camara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, More DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ., Science 324(5926), 2009
PMID: 19390049
Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
Ewing B, Hillier L, Wendl MC, Green P., Genome Res. 8(3), 1998
PMID: 9521921
Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H, Durbin R., Bioinformatics 25(14), 2009
PMID: 19451168
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup., Bioinformatics 25(16), 2009
PMID: 19505943
Bos taurus genome assembly.
Liu Y, Qin X, Song XZ, Jiang H, Shen Y, Durbin KJ, Lien S, Kent MP, Sodeland M, Ren Y, Zhang L, Sodergren E, Havlak P, Worley KC, Weinstock GM, Gibbs RA., BMC Genomics 10(), 2009
PMID: 19393050
The bovine genome sequence - will it live up to the promise?
Moore SS., J. Anim. Breed. Genet. 126(4), 2009
PMID: 19630875
Multiple paternal origins of domestic cattle revealed by Y-specific interspersed multilocus microsatellites.
Perez-Pardal L, Royo LJ, Beja-Pereira A, Chen S, Cantet RJ, Traore A, Curik I, Solkner J, Bozzi R, Fernandez I, Alvarez I, Gutierrez JP, Gomez E, Ponce de Leon FA, Goyache F., Heredity (Edinb) 105(6), 2010
PMID: 20332805

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.
Reese JT, Childers CP, Sundaram JP, Dickens CM, Childs KL, Vile DC, Elsik CG., BMC Genomics 11(), 2010
PMID: 21092105
Conservation genetics of cattle, sheep, and goats.
Taberlet P, Coissac E, Pansu J, Pompanon F., C. R. Biol. 334(3), 2011
PMID: 21377620
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL., Genome Biol. 10(4), 2009
PMID: 19393038

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