Computational construction of specialized biological networks

Lee H-M, Dietz K-J, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340003.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
Abstract / Bemerkung
Today we have access to more than 1500 molecular database systems inside the internet. Based on these databases and information systems, computer scientists developed and implemented different methods for the automatic integration and prediction of biological networks. The idea is to use such methods for the automatic prediction and expansion of rudimentary molecular knowledge. However, the inherent data deficiency problem concerning the properties of specialized network hampers the database- and text-mining-based network construction. This paper presents the concept concerning the computational network expansion, namely for the specific biological network-thiol-disulfide redox regulatory network. Besides, a network-contexted document retrieval system (ncDocReSy) is also introduced to assist the network reduction by providing indirectly relevant literature for user's manual curation. NcDocReSy combines literature search with biological network and ranks the retrieved literature according to the network topology. NcDocReSy is implemented as a Cytoscape plugin.
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Zeitschriftentitel
Journal of Bioinformatics and Computational Biology
Band
11
Zeitschriftennummer
01
Seite
1340003
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Lee H-M, Dietz K-J, Hofestädt R. Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology. 2013;11(01):1340003.
Lee, H. - M., Dietz, K. - J., & Hofestädt, R. (2013). Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology, 11(01), 1340003. doi:10.1142/S0219720013400039
Lee, H. - M., Dietz, K. - J., and Hofestädt, R. (2013). Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology 11, 1340003.
Lee, H.-M., Dietz, K.-J., & Hofestädt, R., 2013. Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology, 11(01), p 1340003.
H.-M. Lee, K.-J. Dietz, and R. Hofestädt, “Computational construction of specialized biological networks”, Journal of Bioinformatics and Computational Biology, vol. 11, 2013, pp. 1340003.
Lee, H.-M., Dietz, K.-J., Hofestädt, R.: Computational construction of specialized biological networks. Journal of Bioinformatics and Computational Biology. 11, 1340003 (2013).
Lee, Hang-Mao, Dietz, Karl-Josef, and Hofestädt, Ralf. “Computational construction of specialized biological networks”. Journal of Bioinformatics and Computational Biology 11.01 (2013): 1340003.

1 Zitation in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

INTRODUCTORY NOTE FOR BGRS-2012 SPECIAL ISSUE.
Kolchanov NA, Orlov YL., J Bioinform Comput Biol 11(1), 2013
PMID: 28847203

5 References

Daten bereitgestellt von Europe PubMed Central.


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Prediction of reversibly oxidized protein cysteine thiols using protein structure properties.
Sanchez R, Riddle M, Woo J, Momand J., Protein Sci. 17(3), 2008
PMID: 18287280

AUTHOR UNKNOWN, 0

Tsuruoka, England) 27(13), 2011

Hearst, England) 23(16), 2007

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