SIRIUS: decomposing isotope patterns for metabolite identification

Böcker S, Lipták Z, Pervukhin A, Letzel MC (2009)
Bioinformatics 25(2): 218-224.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Böcker, Sebastian; Lipták, Zsuzsanna; Pervukhin, Anton; Letzel, Matthias C.
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > AG Genominformatik
Erscheinungsjahr
2009
Zeitschriftentitel
Bioinformatics
Band
25
Ausgabe
2
Seite(n)
218-224
ISSN
1367-4803
eISSN
1460-2059
Page URI
https://pub.uni-bielefeld.de/record/2426487

Zitieren

Böcker S, Lipták Z, Pervukhin A, Letzel MC. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 2009;25(2):218-224.
Böcker, S., Lipták, Z., Pervukhin, A., & Letzel, M. C. (2009). SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics, 25(2), 218-224. https://doi.org/10.1093/bioinformatics/btn603
Böcker, Sebastian, Lipták, Zsuzsanna, Pervukhin, Anton, and Letzel, Matthias C. 2009. “SIRIUS: decomposing isotope patterns for metabolite identification”. Bioinformatics 25 (2): 218-224.
Böcker, S., Lipták, Z., Pervukhin, A., and Letzel, M. C. (2009). SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics 25, 218-224.
Böcker, S., et al., 2009. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics, 25(2), p 218-224.
S. Böcker, et al., “SIRIUS: decomposing isotope patterns for metabolite identification”, Bioinformatics, vol. 25, 2009, pp. 218-224.
Böcker, S., Lipták, Z., Pervukhin, A., Letzel, M.C.: SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 25, 218-224 (2009).
Böcker, Sebastian, Lipták, Zsuzsanna, Pervukhin, Anton, and Letzel, Matthias C. “SIRIUS: decomposing isotope patterns for metabolite identification”. Bioinformatics 25.2 (2009): 218-224.

59 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications.
Schleif FM, Riemer T, Börner U, Schnapka-Hille L, Cross M., Bioinformatics 27(4), 2011
PMID: 21123223
Improved genome annotation through untargeted detection of pathway-specific metabolites.
Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T., BMC Genomics 12 Suppl 1(), 2011
PMID: 21810208
Determination of glycan structure from tandem mass spectra.
Böcker S, Kehr B, Rasche F., IEEE/ACM Trans Comput Biol Bioinform 8(4), 2011
PMID: 21173459
Fourier transform mass spectrometry.
Scigelova M, Hornshaw M, Giannakopulos A, Makarov A., Mol Cell Proteomics 10(7), 2011
PMID: 21742802
Advances in structure elucidation of small molecules using mass spectrometry.
Kind T, Fiehn O., Bioanal Rev 2(1-4), 2010
PMID: 21289855
Construction of confidence regions for isotopic abundance patterns in LC/MS data sets for rigorous determination of molecular formulas.
Ipsen A, Want EJ, Ebbels TM., Anal Chem 82(17), 2010
PMID: 20690638
Computational mass spectrometry for metabolomics: identification of metabolites and small molecules.
Neumann S, Böcker S., Anal Bioanal Chem 398(7-8), 2010
PMID: 20936272
Accurate peak list extraction from proteomic mass spectra for identification and profiling studies.
Barbarini N, Magni P., BMC Bioinformatics 11(), 2010
PMID: 20950483
De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.
Bertsch A, Leinenbach A, Pervukhin A, Lubeck M, Hartmer R, Baessmann C, Elnakady YA, Müller R, Böcker S, Huber CG, Kohlbacher O., Electrophoresis 30(21), 2009
PMID: 19862751

21 References

Daten bereitgestellt von Europe PubMed Central.

The AME2003 atomic mass evaluation (ii): Tables, graphs, and references.
Audi G., 2003
The polynomial part of a restricted partition function related to the frobenius problem.
Beck M., 2001
A fast and simple algorithm for the Money Changing Problem.
Böcker S, Lipták Z., 2007
Towards de novo identification of metabolites by analyzing tandem mass spectra.
Bocker S, Rasche F., Bioinformatics 24(16), 2008
PMID: 18689839
ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.
Falkner JA, Falkner JW, Andrews PC., Bioinformatics 23(2), 2007
PMID: 17121776
Diophantine approach to isotopic abundance calculations.
Hsu CS., 1984
Metabolite annotations based on the integration of mass spectral information.
Iijima Y, Nakamura Y, Ogata Y, Tanaka K, Sakurai N, Suda K, Suzuki T, Suzuki H, Okazaki K, Kitayama M, Kanaya S, Aoki K, Shibata D., Plant J. 54(5), 2008
PMID: 18266924
From genomics to chemical genomics: new developments in KEGG.
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M., Nucleic Acids Res. 34(Database issue), 2006
PMID: 16381885

Kellerer H., 2004
Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm.
Kind T, Fiehn O., BMC Bioinformatics 7(), 2006
PMID: 16646969
Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry.
Kind T, Fiehn O., BMC Bioinformatics 8(), 2007
PMID: 17389044
Calculation of isotope distributions in mass spectrometry: a trivial solution for a non-trivial problem.
Kubinyi H., 1991

Martello S, Toth P., 1990
Ultrahigh-speed calculation of isotope distributions.
Rockwood AL, Van SL., 1996
Isotopic compositions and accurate masses of single isotopic peaks.
Rockwood AL., 2004
Partitions and their representative graphs.
Senior J., 1951

Wilf H., 1990
A general approach to calculating isotopic distributions for mass spectrometry.
Yergey JA., 1983
Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra.
Zhang J, Gao W, Cai J, He S, Zeng R, Chen R., IEEE/ACM Trans Comput Biol Bioinform 2(3), 2005
PMID: 17044185
ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data.
Zhang N, Aebersold R, Schwikowski B., Proteomics 2(10), 2002
PMID: 12422357
ProFound: an expert system for protein identification using mass spectrometric peptide mapping information.
Zhang W, Chait BT., Anal. Chem. 72(11), 2000
PMID: 10857624
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 19015140
PubMed | Europe PMC

Suchen in

Google Scholar