KABOOM! A new suffix-array based algorithm for clustering expression data
Hazelhurst S, Lipták Z (2011)
Bioinformatics 27(24): 3348-3355.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Hazelhurst, Scott;
Lipták, Zsuzsanna
Einrichtung
Erscheinungsjahr
2011
Zeitschriftentitel
Bioinformatics
Band
27
Ausgabe
24
Seite(n)
3348-3355
ISSN
1367-4803
eISSN
1460-2059
Page URI
https://pub.uni-bielefeld.de/record/2401665
Zitieren
Hazelhurst S, Lipták Z. KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics. 2011;27(24):3348-3355.
Hazelhurst, S., & Lipták, Z. (2011). KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics, 27(24), 3348-3355. https://doi.org/10.1093/bioinformatics/btr560
Hazelhurst, Scott, and Lipták, Zsuzsanna. 2011. “KABOOM! A new suffix-array based algorithm for clustering expression data”. Bioinformatics 27 (24): 3348-3355.
Hazelhurst, S., and Lipták, Z. (2011). KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics 27, 3348-3355.
Hazelhurst, S., & Lipták, Z., 2011. KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics, 27(24), p 3348-3355.
S. Hazelhurst and Z. Lipták, “KABOOM! A new suffix-array based algorithm for clustering expression data”, Bioinformatics, vol. 27, 2011, pp. 3348-3355.
Hazelhurst, S., Lipták, Z.: KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics. 27, 3348-3355 (2011).
Hazelhurst, Scott, and Lipták, Zsuzsanna. “KABOOM! A new suffix-array based algorithm for clustering expression data”. Bioinformatics 27.24 (2011): 3348-3355.
5 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace.
Cantalapiedra CP, García-Pereira MJ, Gracia MP, Igartua E, Casas AM, Contreras-Moreira B., Front Plant Sci 8(), 2017
PMID: 28507554
Cantalapiedra CP, García-Pereira MJ, Gracia MP, Igartua E, Casas AM, Contreras-Moreira B., Front Plant Sci 8(), 2017
PMID: 28507554
A bioinformatician's guide to the forefront of suffix array construction algorithms.
Shrestha AM, Frith MC, Horton P., Brief Bioinform 15(2), 2014
PMID: 24413184
Shrestha AM, Frith MC, Horton P., Brief Bioinform 15(2), 2014
PMID: 24413184
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
Bevilacqua V, Pietroleonardo N, Giannino E, Stroppa F, Simone D, Pesole G, Picardi E., BMC Bioinformatics 15 Suppl 15(), 2014
PMID: 25474441
Bevilacqua V, Pietroleonardo N, Giannino E, Stroppa F, Simone D, Pesole G, Picardi E., BMC Bioinformatics 15 Suppl 15(), 2014
PMID: 25474441
Ultrafast clustering algorithms for metagenomic sequence analysis.
Li W, Fu L, Niu B, Wu S, Wooley J., Brief Bioinform 13(6), 2012
PMID: 22772836
Li W, Fu L, Niu B, Wu S, Wooley J., Brief Bioinform 13(6), 2012
PMID: 22772836
A hybrid distance measure for clustering expressed sequence tags originating from the same gene family.
Ng KH, Ho CK, Phon-Amnuaisuk S., PLoS One 7(10), 2012
PMID: 23071763
Ng KH, Ho CK, Phon-Amnuaisuk S., PLoS One 7(10), 2012
PMID: 23071763
27 References
Daten bereitgestellt von Europe PubMed Central.
q-gram based database searching using a suffix array (QUASAR)
Burkhardt, 1999
Burkhardt, 1999
Algorithms for clustering EST sequences: the wcd tool
Hazelhurst, South African Comput. J. 24(), 2008
Hazelhurst, South African Comput. J. 24(), 2008
Hazelhurst, 2003
An overview of the wcd EST clustering tool.
Hazelhurst S, Hide W, Liptak Z, Nogueira R, Starfield R., Bioinformatics 24(13), 2008
PMID: 18480101
Hazelhurst S, Hide W, Liptak Z, Nogueira R, Starfield R., Bioinformatics 24(13), 2008
PMID: 18480101
mkESA: enhanced suffix array construction tool.
Homann R, Fleer D, Giegerich R, Rehmsmeier M., Bioinformatics 25(8), 2009
PMID: 19246510
Homann R, Fleer D, Giegerich R, Rehmsmeier M., Bioinformatics 25(8), 2009
PMID: 19246510
Data clustering: a review
Jain, ACM Comput. Surv. 31(), 1999
Jain, ACM Comput. Surv. 31(), 1999
Parallel EST clustering
Kalyanaraman, 2002
Kalyanaraman, 2002
Binary codes capable of correcting deletions, insertions, and reversals
Levenshtein, Soviet Phys. Doklady 10(), 1966
Levenshtein, Soviet Phys. Doklady 10(), 1966
Fast sequence clustering using a suffix array algorithm.
Malde K, Coward E, Jonassen I., Bioinformatics 19(10), 2003
PMID: 12835265
Malde K, Coward E, Jonassen I., Bioinformatics 19(10), 2003
PMID: 12835265
Suffix arrays: a new method for on-line string searches
Manber, SIAM J. Comput. 22(), 1993
Manber, SIAM J. Comput. 22(), 1993
Engineering a lightweight suffix array construction algorithm
Manzini, Algorithmica 40(), 2004
Manzini, Algorithmica 40(), 2004
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.
Miller RT, Christoffels AG, Gopalakrishnan C, Burke J, Ptitsyn AA, Broveak TR, Hide WA., Genome Res. 9(11), 1999
PMID: 10568754
Miller RT, Christoffels AG, Gopalakrishnan C, Burke J, Ptitsyn AA, Broveak TR, Hide WA., Genome Res. 9(11), 1999
PMID: 10568754
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J., Bioinformatics 19(5), 2003
PMID: 12651724
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J., Bioinformatics 19(5), 2003
PMID: 12651724
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
Picardi E, Mignone F, Pesole G., BMC Bioinformatics 10 Suppl 6(), 2009
PMID: 19534735
Picardi E, Mignone F, Pesole G., BMC Bioinformatics 10 Suppl 6(), 2009
PMID: 19534735
Bioinformatics challenges of new sequencing technology.
Pop M, Salzberg SL., Trends Genet. 24(3), 2008
PMID: 18262676
Pop M, Salzberg SL., Trends Genet. 24(3), 2008
PMID: 18262676
A taxonomy of suffix array construction algorithms
Puglisi, ACM Comput. Surv. 39(), 2007
Puglisi, ACM Comput. Surv. 39(), 2007
Exact and efficient computation of the expected number of missing and common words in random texts
Rahmann, 2000
Rahmann, 2000
PEACE: Parallel Environment for Assembly and Clustering of Gene Expression.
Rao DM, Moler JC, Ozden M, Zhang Y, Liang C, Karro JE., Nucleic Acids Res. 38(Web Server issue), 2010
PMID: 20522511
Rao DM, Moler JC, Ozden M, Zhang Y, Liang C, Karro JE., Nucleic Acids Res. 38(Web Server issue), 2010
PMID: 20522511
Alignment-free sequence comparison (I): statistics and power.
Reinert G, Chew D, Sun F, Waterman MS., J. Comput. Biol. 16(12), 2009
PMID: 20001252
Reinert G, Chew D, Sun F, Waterman MS., J. Comput. Biol. 16(12), 2009
PMID: 20001252
MetaSim: a sequencing simulator for genomics and metagenomics.
Richter DC, Ott F, Auch AF, Schmid R, Huson DH., PLoS ONE 3(10), 2008
PMID: 18841204
Richter DC, Ott F, Auch AF, Schmid R, Huson DH., PLoS ONE 3(10), 2008
PMID: 18841204
Editorial: Second-generation sequencing.
Robison K., Brief. Bioinformatics 11(5), 2010
PMID: 20861023
Robison K., Brief. Bioinformatics 11(5), 2010
PMID: 20861023
New Generations: Sequencing Machines and Their Computational Challenges.
Schwartz DC, Waterman MS., J Comput Sci Technol 25(1), 2010
PMID: 22121326
Schwartz DC, Waterman MS., J Comput Sci Technol 25(1), 2010
PMID: 22121326
Algorithms for the Analysis of Expressed Sequence Tags
Slater, 2000
Slater, 2000
Computation of d2: a measure of sequence dissimilarity
Torney, 1990
Torney, 1990
Approximate string-matching with q-grams and maximal matches
Ukkonen, Theor. Comput. Sci. 92(), 1992
Ukkonen, Theor. Comput. Sci. 92(), 1992
A method for evaluating the quality of string dissimilarity measures and clustering algorithms for EST clustering
Zimmermann, 2004
Zimmermann, 2004
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 21984769
PubMed | Europe PMC
Suchen in