Intron creation and DNA repair
Ragg H (2011)
Cell. Mol. Life Sci. 68(2): 235-242.
Zeitschriftenaufsatz
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Einrichtung
Abstract / Bemerkung
The genesis of the exon-intron patterns of eukaryotic genes persists as one of the most enigmatic questions in molecular genetics. In particular, the origin and mechanisms responsible for creation of spliceosomal introns have remained controversial. Now the issue appears to have taken a turn. The formation of novel introns in eukaryotes, including some vertebrate lineages, is not as rare as commonly assumed. Moreover, introns appear to have been gained in parallel at closely spaced sites and even repeatedly at the same position. Based on these discoveries, novel hypotheses of intron creation have been developed. The new concepts posit that DNA repair processes are a major source of intron formation. Here, after summarizing the current views of intron gain mechanisms, I review findings in support of the DNA repair hypothesis that provides a global mechanistic scenario for intron creation. Some implications on our perception of the mosaic structure of eukaryotic genes are also discussed.
Stichworte
Intron creation;
DNA repair;
Splicing
Erscheinungsjahr
2011
Zeitschriftentitel
Cell. Mol. Life Sci.
Band
68
Ausgabe
2
Seite(n)
235-242
ISSN
1420-682X
eISSN
1420-9071
Page URI
https://pub.uni-bielefeld.de/record/1948655
Zitieren
Ragg H. Intron creation and DNA repair. Cell. Mol. Life Sci. 2011;68(2):235-242.
Ragg, H. (2011). Intron creation and DNA repair. Cell. Mol. Life Sci., 68(2), 235-242. https://doi.org/10.1007/s00018-010-0532-2
Ragg, Hermann. 2011. “Intron creation and DNA repair”. Cell. Mol. Life Sci. 68 (2): 235-242.
Ragg, H. (2011). Intron creation and DNA repair. Cell. Mol. Life Sci. 68, 235-242.
Ragg, H., 2011. Intron creation and DNA repair. Cell. Mol. Life Sci., 68(2), p 235-242.
H. Ragg, “Intron creation and DNA repair”, Cell. Mol. Life Sci., vol. 68, 2011, pp. 235-242.
Ragg, H.: Intron creation and DNA repair. Cell. Mol. Life Sci. 68, 235-242 (2011).
Ragg, Hermann. “Intron creation and DNA repair”. Cell. Mol. Life Sci. 68.2 (2011): 235-242.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Hsp27 gene in Drosophila ananassae subgroup was split by a recently acquired intron.
Zhang L, Kang H, Jin S, Zeng QT, Yang Y., J Genet 95(2), 2016
PMID: 27350667
Zhang L, Kang H, Jin S, Zeng QT, Yang Y., J Genet 95(2), 2016
PMID: 27350667
Association of intron loss with high mutation rate in Arabidopsis: implications for genome size evolution.
Yang YF, Zhu T, Niu DK., Genome Biol Evol 5(4), 2013
PMID: 23516254
Yang YF, Zhu T, Niu DK., Genome Biol Evol 5(4), 2013
PMID: 23516254
Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes.
Da Lage JL, Binder M, Hua-Van A, Janeček S, Casane D., BMC Evol Biol 13(), 2013
PMID: 23405862
Da Lage JL, Binder M, Hua-Van A, Janeček S, Casane D., BMC Evol Biol 13(), 2013
PMID: 23405862
Spliceosome twin introns in fungal nuclear transcripts.
Flipphi M, Fekete E, Ag N, Scazzocchio C, Karaffa L., Fungal Genet Biol 57(), 2013
PMID: 23792080
Flipphi M, Fekete E, Ag N, Scazzocchio C, Karaffa L., Fungal Genet Biol 57(), 2013
PMID: 23792080
The role of reverse transcriptase in intron gain and loss mechanisms.
Cohen NE, Shen R, Carmel L., Mol Biol Evol 29(1), 2012
PMID: 21804076
Cohen NE, Shen R, Carmel L., Mol Biol Evol 29(1), 2012
PMID: 21804076
Spliceosomal intron insertions in genome compacted ray-finned fishes as evident from phylogeny of MC receptors, also supported by a few other GPCRs.
Kumar A, Bhandari A, Sinha R, Goyal P, Grapputo A., PLoS One 6(8), 2011
PMID: 21850219
Kumar A, Bhandari A, Sinha R, Goyal P, Grapputo A., PLoS One 6(8), 2011
PMID: 21850219
Mechanisms of intron gain and loss in Drosophila.
Yenerall P, Krupa B, Zhou L., BMC Evol Biol 11(), 2011
PMID: 22182367
Yenerall P, Krupa B, Zhou L., BMC Evol Biol 11(), 2011
PMID: 22182367
83 References
Daten bereitgestellt von Europe PubMed Central.
Modern origin of numerous alternatively spliced human introns from tandem arrays.
Zhuo D, Madden R, Elela SA, Chabot B., Proc. Natl. Acad. Sci. U.S.A. 104(3), 2007
PMID: 17210920
Zhuo D, Madden R, Elela SA, Chabot B., Proc. Natl. Acad. Sci. U.S.A. 104(3), 2007
PMID: 17210920
Spliced segments at the 5' terminus of adenovirus 2 late mRNA.
Berget SM, Moore C, Sharp PA., Proc. Natl. Acad. Sci. U.S.A. 74(8), 1977
PMID: 269380
Berget SM, Moore C, Sharp PA., Proc. Natl. Acad. Sci. U.S.A. 74(8), 1977
PMID: 269380
Intron loss and gain in Drosophila.
Coulombe-Huntington J, Majewski J., Mol. Biol. Evol. 24(12), 2007
PMID: 17965454
Coulombe-Huntington J, Majewski J., Mol. Biol. Evol. 24(12), 2007
PMID: 17965454
Massive horizontal gene transfer in bdelloid rotifers.
Gladyshev EA, Meselson M, Arkhipova IR., Science 320(5880), 2008
PMID: 18511688
Gladyshev EA, Meselson M, Arkhipova IR., Science 320(5880), 2008
PMID: 18511688
Evidence for insertion of a new intron into an Mhc gene of perch-like fish.
Figueroa F, Ono H, Tichy H, O'Huigin C, Klein J., Proc. Biol. Sci. 259(1356), 1995
PMID: 7740049
Figueroa F, Ono H, Tichy H, O'Huigin C, Klein J., Proc. Biol. Sci. 259(1356), 1995
PMID: 7740049
De novo synthesis of an intron by the maize transposable element Dissociation.
Giroux MJ, Clancy M, Baier J, Ingham L, McCarty D, Hannah LC., Proc. Natl. Acad. Sci. U.S.A. 91(25), 1994
PMID: 7991598
Giroux MJ, Clancy M, Baier J, Ingham L, McCarty D, Hannah LC., Proc. Natl. Acad. Sci. U.S.A. 91(25), 1994
PMID: 7991598
Advances in mechanisms of genetic instability related to hereditary neurological diseases.
Wells RD, Dere R, Hebert ML, Napierala M, Son LS., Nucleic Acids Res. 33(12), 2005
PMID: 16006624
Wells RD, Dere R, Hebert ML, Napierala M, Son LS., Nucleic Acids Res. 33(12), 2005
PMID: 16006624
Capture of linear fragments at a double-strand break in yeast.
Haviv-Chesner A, Kobayashi Y, Gabriel A, Kupiec M., Nucleic Acids Res. 35(15), 2007
PMID: 17670800
Haviv-Chesner A, Kobayashi Y, Gabriel A, Kupiec M., Nucleic Acids Res. 35(15), 2007
PMID: 17670800
Origins of recently gained introns in Caenorhabditis.
Coghlan A, Wolfe KH., Proc. Natl. Acad. Sci. U.S.A. 101(31), 2004
PMID: 15243155
Coghlan A, Wolfe KH., Proc. Natl. Acad. Sci. U.S.A. 101(31), 2004
PMID: 15243155
Limited terminal transferase in human DNA polymerase mu defines the required balance between accuracy and efficiency in NHEJ.
Andrade P, Martin MJ, Juarez R, Lopez de Saro F, Blanco L., Proc. Natl. Acad. Sci. U.S.A. 106(38), 2009
PMID: 19805281
Andrade P, Martin MJ, Juarez R, Lopez de Saro F, Blanco L., Proc. Natl. Acad. Sci. U.S.A. 106(38), 2009
PMID: 19805281
Unusual genomic structure: melanocortin receptors in Fugu.
Schioth HB, Haitina T, Fridmanis D, Klovins J., Ann. N. Y. Acad. Sci. 1040(), 2005
PMID: 15891089
Schioth HB, Haitina T, Fridmanis D, Klovins J., Ann. N. Y. Acad. Sci. 1040(), 2005
PMID: 15891089
Flexibility in the order of action and in the enzymology of the nuclease, polymerases, and ligase of vertebrate non-homologous DNA end joining: relevance to cancer, aging, and the immune system.
Lieber MR, Lu H, Gu J, Schwarz K., Cell Res. 18(1), 2008
PMID: 18087292
Lieber MR, Lu H, Gu J, Schwarz K., Cell Res. 18(1), 2008
PMID: 18087292
Miniature genome in the marine chordate Oikopleura dioica.
Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, Gorsky G, Thompson EM, Lehrach H, Reinhardt R, Chourrout D., Science 294(5551), 2001
PMID: 11752568
Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, Gorsky G, Thompson EM, Lehrach H, Reinhardt R, Chourrout D., Science 294(5551), 2001
PMID: 11752568
Large-scale expansions of Friedreich's ataxia GAA repeats in yeast.
Shishkin AA, Voineagu I, Matera R, Cherng N, Chernet BT, Krasilnikova MM, Narayanan V, Lobachev KS, Mirkin SM., Mol. Cell 35(1), 2009
PMID: 19595718
Shishkin AA, Voineagu I, Matera R, Cherng N, Chernet BT, Krasilnikova MM, Narayanan V, Lobachev KS, Mirkin SM., Mol. Cell 35(1), 2009
PMID: 19595718
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.
Lieber MR., Annu. Rev. Biochem. 79(), 2010
PMID: 20192759
Lieber MR., Annu. Rev. Biochem. 79(), 2010
PMID: 20192759
The biology of intron gain and loss.
Jeffares DC, Mourier T, Penny D., Trends Genet. 22(1), 2005
PMID: 16290250
Jeffares DC, Mourier T, Penny D., Trends Genet. 22(1), 2005
PMID: 16290250
DNA recombination: the replication connection.
Haber JE., Trends Biochem. Sci. 24(7), 1999
PMID: 10390616
Haber JE., Trends Biochem. Sci. 24(7), 1999
PMID: 10390616
The spliceosome: design principles of a dynamic RNP machine.
Wahl MC, Will CL, Luhrmann R., Cell 136(4), 2009
PMID: 19239890
Wahl MC, Will CL, Luhrmann R., Cell 136(4), 2009
PMID: 19239890
Repair of sequence-specific 125I-induced double-strand breaks by nonhomologous DNA end joining in mammalian cell-free extracts.
Odersky A, Panyutin IV, Panyutin IG, Schunck C, Feldmann E, Goedecke W, Neumann RD, Obe G, Pfeiffer P., J. Biol. Chem. 277(14), 2002
PMID: 11821407
Odersky A, Panyutin IV, Panyutin IG, Schunck C, Feldmann E, Goedecke W, Neumann RD, Obe G, Pfeiffer P., J. Biol. Chem. 277(14), 2002
PMID: 11821407
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica.
Edvardsen RB, Lerat E, Maeland AD, Flat M, Tewari R, Jensen MF, Lehrach H, Reinhardt R, Seo HC, Chourrout D., J. Mol. Evol. 59(4), 2004
PMID: 15638456
Edvardsen RB, Lerat E, Maeland AD, Flat M, Tewari R, Jensen MF, Lehrach H, Reinhardt R, Seo HC, Chourrout D., J. Mol. Evol. 59(4), 2004
PMID: 15638456
Mechanism and regulation of human non-homologous DNA end-joining.
Lieber MR, Ma Y, Pannicke U, Schwarz K., Nat. Rev. Mol. Cell Biol. 4(9), 2003
PMID: 14506474
Lieber MR, Ma Y, Pannicke U, Schwarz K., Nat. Rev. Mol. Cell Biol. 4(9), 2003
PMID: 14506474
Homology-directed repair is a major double-strand break repair pathway in mammalian cells.
Liang F, Han M, Romanienko PJ, Jasin M., Proc. Natl. Acad. Sci. U.S.A. 95(9), 1998
PMID: 9560248
Liang F, Han M, Romanienko PJ, Jasin M., Proc. Natl. Acad. Sci. U.S.A. 95(9), 1998
PMID: 9560248
A comparative approach shows differences in patterns of numt insertion during hominoid evolution.
Jensen-Seaman MI, Wildschutte JH, Soto-Calderon ID, Anthony NM., J. Mol. Evol. 68(6), 2009
PMID: 19471988
Jensen-Seaman MI, Wildschutte JH, Soto-Calderon ID, Anthony NM., J. Mol. Evol. 68(6), 2009
PMID: 19471988
Mystery of intron gain: new data and new models.
Roy SW, Irimia M., Trends Genet. 25(2), 2008
PMID: 19070397
Roy SW, Irimia M., Trends Genet. 25(2), 2008
PMID: 19070397
An early evolutionary origin for the minor spliceosome.
Russell AG, Charette JM, Spencer DF, Gray MW., Nature 443(7113), 2006
PMID: 17051219
Russell AG, Charette JM, Spencer DF, Gray MW., Nature 443(7113), 2006
PMID: 17051219
Mystery of intron gain.
Fedorov A, Roy S, Fedorova L, Gilbert W., Genome Res. 13(10), 2003
PMID: 12975308
Fedorov A, Roy S, Fedorova L, Gilbert W., Genome Res. 13(10), 2003
PMID: 12975308
Comprehensive splice-site analysis using comparative genomics.
Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, Sachidanandam R., Nucleic Acids Res. 34(14), 2006
PMID: 16914448
Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, Sachidanandam R., Nucleic Acids Res. 34(14), 2006
PMID: 16914448
The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
Koonin EV., Biol. Direct 1(), 2006
PMID: 16907971
Koonin EV., Biol. Direct 1(), 2006
PMID: 16907971
The evolution of spliceosomal introns: patterns, puzzles and progress.
Roy SW, Gilbert W., Nat. Rev. Genet. 7(3), 2006
PMID: 16485020
Roy SW, Gilbert W., Nat. Rev. Genet. 7(3), 2006
PMID: 16485020
RNA-editing-mediated exon evolution.
Lev-Maor G, Sorek R, Levanon EY, Paz N, Eisenberg E, Ast G., Genome Biol. 8(2), 2007
PMID: 17326827
Lev-Maor G, Sorek R, Levanon EY, Paz N, Eisenberg E, Ast G., Genome Biol. 8(2), 2007
PMID: 17326827
Smoke without fire: most reported cases of intron gain in nematodes instead reflect intron losses.
Roy SW, Penny D., Mol. Biol. Evol. 23(12), 2006
PMID: 16943250
Roy SW, Penny D., Mol. Biol. Evol. 23(12), 2006
PMID: 16943250
When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis.
Roy SW, Irimia M., Bioessays 30(6), 2008
PMID: 18478540
Roy SW, Irimia M., Bioessays 30(6), 2008
PMID: 18478540
Making ends meet: repairing breaks in bacterial DNA by non-homologous end-joining.
Bowater R, Doherty AJ., PLoS Genet. 2(2), 2006
PMID: 16518468
Bowater R, Doherty AJ., PLoS Genet. 2(2), 2006
PMID: 16518468
Evidence for degenerate tetraploidy in bdelloid rotifers.
Mark Welch DB, Mark Welch JL, Meselson M., Proc. Natl. Acad. Sci. U.S.A. 105(13), 2008
PMID: 18362354
Mark Welch DB, Mark Welch JL, Meselson M., Proc. Natl. Acad. Sci. U.S.A. 105(13), 2008
PMID: 18362354
The evolutionary gain of spliceosomal introns: sequence and phase preferences.
Qiu WG, Schisler N, Stoltzfus A., Mol. Biol. Evol. 21(7), 2004
PMID: 15014153
Qiu WG, Schisler N, Stoltzfus A., Mol. Biol. Evol. 21(7), 2004
PMID: 15014153
Endogenous DNA double-strand breaks: production, fidelity of repair, and induction of cancer.
Vilenchik MM, Knudson AG., Proc. Natl. Acad. Sci. U.S.A. 100(22), 2003
PMID: 14566050
Vilenchik MM, Knudson AG., Proc. Natl. Acad. Sci. U.S.A. 100(22), 2003
PMID: 14566050
An overview of the introns-first theory.
Penny D, Hoeppner MP, Poole AM, Jeffares DC., J. Mol. Evol. 69(5), 2009
PMID: 19777149
Penny D, Hoeppner MP, Poole AM, Jeffares DC., J. Mol. Evol. 69(5), 2009
PMID: 19777149
A role for DNA polymerase mu in the emerging DJH rearrangements of the postgastrulation mouse embryo.
Gozalbo-Lopez B, Andrade P, Terrados G, de Andres B, Serrano N, Cortegano I, Palacios B, Bernad A, Blanco L, Marcos MA, Gaspar ML., Mol. Cell. Biol. 29(5), 2008
PMID: 19103746
Gozalbo-Lopez B, Andrade P, Terrados G, de Andres B, Serrano N, Cortegano I, Palacios B, Bernad A, Blanco L, Marcos MA, Gaspar ML., Mol. Cell. Biol. 29(5), 2008
PMID: 19103746
Genome destabilization by homologous recombination in the germ line.
Sasaki M, Lange J, Keeney S., Nat. Rev. Mol. Cell Biol. 11(3), 2010
PMID: 20164840
Sasaki M, Lange J, Keeney S., Nat. Rev. Mol. Cell Biol. 11(3), 2010
PMID: 20164840
Gene structure and functional characterization of growth hormone in dogfish, Squalus acanthias.
Moriyama S, Oda M, Yamazaki T, Yamaguchi K, Amiya N, Takahashi A, Amano M, Goto T, Nozaki M, Meguro H, Kawauchi H., Zool. Sci. 25(6), 2008
PMID: 18624571
Moriyama S, Oda M, Yamazaki T, Yamaguchi K, Amiya N, Takahashi A, Amano M, Goto T, Nozaki M, Meguro H, Kawauchi H., Zool. Sci. 25(6), 2008
PMID: 18624571
Intronization, de-intronization and intron sliding are rare in Cryptococcus.
Roy SW., BMC Evol. Biol. 9(), 2009
PMID: 19664208
Roy SW., BMC Evol. Biol. 9(), 2009
PMID: 19664208
Structural insight into the substrate specificity of DNA Polymerase mu.
Moon AF, Garcia-Diaz M, Bebenek K, Davis BJ, Zhong X, Ramsden DA, Kunkel TA, Pedersen LC., Nat. Struct. Mol. Biol. 14(1), 2006
PMID: 17159995
Moon AF, Garcia-Diaz M, Bebenek K, Davis BJ, Zhong X, Ramsden DA, Kunkel TA, Pedersen LC., Nat. Struct. Mol. Biol. 14(1), 2006
PMID: 17159995
Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions.
Yu AM, McVey M., Nucleic Acids Res. 38(17), 2010
PMID: 20460465
Yu AM, McVey M., Nucleic Acids Res. 38(17), 2010
PMID: 20460465
Eukaryotic DNA polymerases: proposal for a revised nomenclature.
Burgers PM, Koonin EV, Bruford E, Blanco L, Burtis KC, Christman MF, Copeland WC, Friedberg EC, Hanaoka F, Hinkle DC, Lawrence CW, Nakanishi M, Ohmori H, Prakash L, Prakash S, Reynaud CA, Sugino A, Todo T, Wang Z, Weill JC, Woodgate R., J. Biol. Chem. 276(47), 2001
PMID: 11579108
Burgers PM, Koonin EV, Bruford E, Blanco L, Burtis KC, Christman MF, Copeland WC, Friedberg EC, Hanaoka F, Hinkle DC, Lawrence CW, Nakanishi M, Ohmori H, Prakash L, Prakash S, Reynaud CA, Sugino A, Todo T, Wang Z, Weill JC, Woodgate R., J. Biol. Chem. 276(47), 2001
PMID: 11579108
Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA.
Lin Y, Waldman AS., Nucleic Acids Res. 29(19), 2001
PMID: 11574679
Lin Y, Waldman AS., Nucleic Acids Res. 29(19), 2001
PMID: 11574679
Extensive, recent intron gains in Daphnia populations.
Li W, Tucker AE, Sung W, Thomas WK, Lynch M., Science 326(5957), 2009
PMID: 19965475
Li W, Tucker AE, Sung W, Thomas WK, Lynch M., Science 326(5957), 2009
PMID: 19965475
Positive Darwinian selection and the birth of an olfactory receptor clade in teleosts.
Hussain A, Saraiva LR, Korsching SI., Proc. Natl. Acad. Sci. U.S.A. 106(11), 2009
PMID: 19237578
Hussain A, Saraiva LR, Korsching SI., Proc. Natl. Acad. Sci. U.S.A. 106(11), 2009
PMID: 19237578
Degenerate tetraploidy was established before bdelloid rotifer families diverged.
Hur JH, Van Doninck K, Mandigo ML, Meselson M., Mol. Biol. Evol. 26(2), 2008
PMID: 18996928
Hur JH, Van Doninck K, Mandigo ML, Meselson M., Mol. Biol. Evol. 26(2), 2008
PMID: 18996928
DNA repair in mammalian cells: DNA double-strand break repair: how to fix a broken relationship.
Pardo B, Gomez-Gonzalez B, Aguilera A., Cell. Mol. Life Sci. 66(6), 2009
PMID: 19153654
Pardo B, Gomez-Gonzalez B, Aguilera A., Cell. Mol. Life Sci. 66(6), 2009
PMID: 19153654
Origin of introns by 'intronization' of exonic sequences.
Irimia M, Rukov JL, Penny D, Vinther J, Garcia-Fernandez J, Roy SW., Trends Genet. 24(8), 2008
PMID: 18597887
Irimia M, Rukov JL, Penny D, Vinther J, Garcia-Fernandez J, Roy SW., Trends Genet. 24(8), 2008
PMID: 18597887
Origin, evolution and genetic effects of nuclear insertions of organelle DNA.
Leister D., Trends Genet. 21(12), 2005
PMID: 16216380
Leister D., Trends Genet. 21(12), 2005
PMID: 16216380
Repair of ionizing radiation-induced DNA double-strand breaks by non-homologous end-joining.
Mahaney BL, Meek K, Lees-Miller SP., Biochem. J. 417(3), 2009
PMID: 19133841
Mahaney BL, Meek K, Lees-Miller SP., Biochem. J. 417(3), 2009
PMID: 19133841
Ubiquitous internal gene duplication and intron creation in eukaryotes.
Gao X, Lynch M., Proc. Natl. Acad. Sci. U.S.A. 106(49), 2009
PMID: 19926850
Gao X, Lynch M., Proc. Natl. Acad. Sci. U.S.A. 106(49), 2009
PMID: 19926850
Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory.
Logsdon JM Jr, Tyshenko MG, Dixon C, D-Jafari J, Walker VK, Palmer JD., Proc. Natl. Acad. Sci. U.S.A. 92(18), 1995
PMID: 7667320
Logsdon JM Jr, Tyshenko MG, Dixon C, D-Jafari J, Walker VK, Palmer JD., Proc. Natl. Acad. Sci. U.S.A. 92(18), 1995
PMID: 7667320
An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA.
Chow LT, Gelinas RE, Broker TR, Roberts RJ., Cell 12(1), 1977
PMID: 902310
Chow LT, Gelinas RE, Broker TR, Roberts RJ., Cell 12(1), 1977
PMID: 902310
Splicing removes the Caenorhabditis elegans transposon Tc1 from most mutant pre-mRNAs.
Rushforth AM, Anderson P., Mol. Cell. Biol. 16(1), 1996
PMID: 8524324
Rushforth AM, Anderson P., Mol. Cell. Biol. 16(1), 1996
PMID: 8524324
Intron presence-absence polymorphisms in Daphnia.
Omilian AR, Scofield DG, Lynch M., Mol. Biol. Evol. 25(10), 2008
PMID: 18667441
Omilian AR, Scofield DG, Lynch M., Mol. Biol. Evol. 25(10), 2008
PMID: 18667441
Capture of DNA sequences at double-strand breaks in mammalian chromosomes.
Lin Y, Waldman AS., Genetics 158(4), 2001
PMID: 11514454
Lin Y, Waldman AS., Genetics 158(4), 2001
PMID: 11514454
High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes.
Knowles DG, McLysaght A., Mol. Biol. Evol. 23(8), 2006
PMID: 16720694
Knowles DG, McLysaght A., Mol. Biol. Evol. 23(8), 2006
PMID: 16720694
Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D., Science 310(5752), 2005
PMID: 16311335
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D., Science 310(5752), 2005
PMID: 16311335
The birth of new exons: mechanisms and evolutionary consequences.
Sorek R., RNA 13(10), 2007
PMID: 17709368
Sorek R., RNA 13(10), 2007
PMID: 17709368
A retrotransposon 412 insertion within an exon of the Drosophila melanogaster vermilion gene is spliced from the precursor RNA.
Fridell RA, Pret AM, Searles LL., Genes Dev. 4(4), 1990
PMID: 2163342
Fridell RA, Pret AM, Searles LL., Genes Dev. 4(4), 1990
PMID: 2163342
Alu-SINE exonization: en route to protein-coding function.
Krull M, Brosius J, Schmitz J., Mol. Biol. Evol. 22(8), 2005
PMID: 15901843
Krull M, Brosius J, Schmitz J., Mol. Biol. Evol. 22(8), 2005
PMID: 15901843
Telomeric repeats far from the ends: mechanisms of origin and role in evolution.
Ruiz-Herrera A, Nergadze SG, Santagostino M, Giulotto E., Cytogenet. Genome Res. 122(3-4), 2008
PMID: 19188690
Ruiz-Herrera A, Nergadze SG, Santagostino M, Giulotto E., Cytogenet. Genome Res. 122(3-4), 2008
PMID: 19188690
The human LINE-1 retrotransposon creates DNA double-strand breaks.
Gasior SL, Wakeman TP, Xu B, Deininger PL., J. Mol. Biol. 357(5), 2006
PMID: 16490214
Gasior SL, Wakeman TP, Xu B, Deininger PL., J. Mol. Biol. 357(5), 2006
PMID: 16490214
Numt-mediated double-strand break repair mitigates deletions during primate genome evolution.
Hazkani-Covo E, Covo S., PLoS Genet. 4(10), 2008
PMID: 18949041
Hazkani-Covo E, Covo S., PLoS Genet. 4(10), 2008
PMID: 18949041
Vertebrate serpins: construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses.
Ragg H, Lokot T, Kamp PB, Atchley WR, Dress A., Mol. Biol. Evol. 18(4), 2001
PMID: 11264410
Ragg H, Lokot T, Kamp PB, Atchley WR, Dress A., Mol. Biol. Evol. 18(4), 2001
PMID: 11264410
Origins and evolution of spliceosomal introns.
Rodriguez-Trelles F, Tarrio R, Ayala FJ., Annu. Rev. Genet. 40(), 2006
PMID: 17094737
Rodriguez-Trelles F, Tarrio R, Ayala FJ., Annu. Rev. Genet. 40(), 2006
PMID: 17094737
Evolutionary dynamics of U12-type spliceosomal introns.
Lin CF, Mount SM, Jarmolowski A, Makalowski W., BMC Evol. Biol. 10(), 2010
PMID: 20163699
Lin CF, Mount SM, Jarmolowski A, Makalowski W., BMC Evol. Biol. 10(), 2010
PMID: 20163699
Mechanisms of double-strand break repair in somatic mammalian cells.
Hartlerode AJ, Scully R., Biochem. J. 423(2), 2009
PMID: 19772495
Hartlerode AJ, Scully R., Biochem. J. 423(2), 2009
PMID: 19772495
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS., Science 317(5834), 2007
PMID: 17615350
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS., Science 317(5834), 2007
PMID: 17615350
The initiation sites for RNA transcription in Ad2 DNA.
Evans RM, Fraser N, Ziff E, Weber J, Wilson M, Darnell JE., Cell 12(3), 1977
PMID: 922890
Evans RM, Fraser N, Ziff E, Weber J, Wilson M, Darnell JE., Cell 12(3), 1977
PMID: 922890
XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps.
Gu J, Lu H, Tippin B, Shimazaki N, Goodman MF, Lieber MR., EMBO J. 26(4), 2007
PMID: 17290226
Gu J, Lu H, Tippin B, Shimazaki N, Goodman MF, Lieber MR., EMBO J. 26(4), 2007
PMID: 17290226
A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain.
Roy SW, Penny D., Mol. Biol. Evol. 24(7), 2007
PMID: 17350938
Roy SW, Penny D., Mol. Biol. Evol. 24(7), 2007
PMID: 17350938
Nonsense-mediated decay enables intron gain in Drosophila.
Farlow A, Meduri E, Dolezal M, Hua L, Schlotterer C., PLoS Genet. 6(1), 2010
PMID: 20107520
Farlow A, Meduri E, Dolezal M, Hua L, Schlotterer C., PLoS Genet. 6(1), 2010
PMID: 20107520
Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes.
Ragg H, Kumar A, Koster K, Bentele C, Wang Y, Frese MA, Prib N, Kruger O., BMC Evol. Biol. 9(), 2009
PMID: 19698129
Ragg H, Kumar A, Koster K, Bentele C, Wang Y, Frese MA, Prib N, Kruger O., BMC Evol. Biol. 9(), 2009
PMID: 19698129
Extreme resistance of bdelloid rotifers to ionizing radiation.
Gladyshev E, Meselson M., Proc. Natl. Acad. Sci. U.S.A. 105(13), 2008
PMID: 18362355
Gladyshev E, Meselson M., Proc. Natl. Acad. Sci. U.S.A. 105(13), 2008
PMID: 18362355
Complex spliceosomal organization ancestral to extant eukaryotes.
Collins L, Penny D., Mol. Biol. Evol. 22(4), 2005
PMID: 15659557
Collins L, Penny D., Mol. Biol. Evol. 22(4), 2005
PMID: 15659557
Three distinct modes of intron dynamics in the evolution of eukaryotes.
Carmel L, Wolf YI, Rogozin IB, Koonin EV., Genome Res. 17(7), 2007
PMID: 17495008
Carmel L, Wolf YI, Rogozin IB, Koonin EV., Genome Res. 17(7), 2007
PMID: 17495008
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