Identification of novel lysosomal matrix proteins by proteome analysis

Kollmann K, Mutenda KE, Balleininger M, Eckermann E, von Figura K, Schmidt B, Lübke T (2005)
Proteomics 5(15): 3966-3978.

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Proteomics
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3966-3978
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Kollmann K, Mutenda KE, Balleininger M, et al. Identification of novel lysosomal matrix proteins by proteome analysis. Proteomics. 2005;5(15):3966-3978.
Kollmann, K., Mutenda, K. E., Balleininger, M., Eckermann, E., von Figura, K., Schmidt, B., & Lübke, T. (2005). Identification of novel lysosomal matrix proteins by proteome analysis. Proteomics, 5(15), 3966-3978. doi:10.1002/pmic.200401247
Kollmann, K., Mutenda, K. E., Balleininger, M., Eckermann, E., von Figura, K., Schmidt, B., and Lübke, T. (2005). Identification of novel lysosomal matrix proteins by proteome analysis. Proteomics 5, 3966-3978.
Kollmann, K., et al., 2005. Identification of novel lysosomal matrix proteins by proteome analysis. Proteomics, 5(15), p 3966-3978.
K. Kollmann, et al., “Identification of novel lysosomal matrix proteins by proteome analysis”, Proteomics, vol. 5, 2005, pp. 3966-3978.
Kollmann, K., Mutenda, K.E., Balleininger, M., Eckermann, E., von Figura, K., Schmidt, B., Lübke, T.: Identification of novel lysosomal matrix proteins by proteome analysis. Proteomics. 5, 3966-3978 (2005).
Kollmann, Katrin, Mutenda, Kudzai E., Balleininger, Martina, Eckermann, Ellen, von Figura, Kurt, Schmidt, Bernhard, and Lübke, Torben. “Identification of novel lysosomal matrix proteins by proteome analysis”. Proteomics 5.15 (2005): 3966-3978.

52 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters.
Wei Y, Xiong ZJ, Li J, Zou C, Cairo CW, Klassen JS, Privé GG., Commun Biol 2(), 2019
PMID: 30729188
Organellar Omics-A Reviving Strategy to Untangle the Biomolecular Complexity of the Cell.
Tharkeshwar AK, Gevaert K, Annaert W., Proteomics 18(5-6), 2018
PMID: 29125683
Stat3-mediated alterations in lysosomal membrane protein composition.
Lloyd-Lewis B, Krueger CC, Sargeant TJ, D'Angelo ME, Deery MJ, Feret R, Howard JA, Lilley KS, Watson CJ., J Biol Chem 293(12), 2018
PMID: 29343516
The Structure and Biological Function of CREG.
Ghobrial G, Araujo L, Jinwala F, Li S, Lee LY., Front Cell Dev Biol 6(), 2018
PMID: 30416997
Exacerbating and reversing lysosomal storage diseases: from yeast to humans.
Rajakumar T, Munkacsi AB, Sturley SL., Microb Cell 4(9), 2017
PMID: 28913343
Proteomics Insights into Autophagy.
Cudjoe EK, Saleh T, Hawkridge AM, Gewirtz DA., Proteomics 17(20), 2017
PMID: 28902446
Microtargeting cancer metabolism: opening new therapeutic windows based on lipid metabolism.
Gómez de Cedrón M, Ramírez de Molina A., J Lipid Res 57(2), 2016
PMID: 26630911
Potential pitfalls and solutions for use of fluorescent fusion proteins to study the lysosome.
Huang L, Pike D, Sleat DE, Nanda V, Lobel P., PLoS One 9(2), 2014
PMID: 24586430
Serine carboxypeptidase SCPEP1 and Cathepsin A play complementary roles in regulation of vasoconstriction via inactivation of endothelin-1.
Pan X, Grigoryeva L, Seyrantepe V, Peng J, Kollmann K, Tremblay J, Lavoie JL, Hinek A, Lübke T, Pshezhetsky AV., PLoS Genet 10(2), 2014
PMID: 24586188
Hyaluronan, a crucial regulator of inflammation.
Petrey AC, de la Motte CA., Front Immunol 5(), 2014
PMID: 24653726
Cell biology and function of neuronal ceroid lipofuscinosis-related proteins.
Kollmann K, Uusi-Rauva K, Scifo E, Tyynelä J, Jalanko A, Braulke T., Biochim Biophys Acta 1832(11), 2013
PMID: 23402926
An extended proteome map of the lysosomal membrane reveals novel potential transporters.
Chapel A, Kieffer-Jaquinod S, Sagné C, Verdon Q, Ivaldi C, Mellal M, Thirion J, Jadot M, Bruley C, Garin J, Gasnier B, Journet A., Mol Cell Proteomics 12(6), 2013
PMID: 23436907
hLGDB: a database of human lysosomal genes and their regulation.
Brozzi A, Urbanelli L, Germain PL, Magini A, Emiliani C., Database (Oxford) 2013(), 2013
PMID: 23584836
Arylsulfatase K, a novel lysosomal sulfatase.
Wiegmann EM, Westendorf E, Kalus I, Pringle TH, Lübke T, Dierks T., J Biol Chem 288(42), 2013
PMID: 23986440
Topology and membrane anchoring of the lysosomal storage disease-related protein CLN5.
Larkin H, Ribeiro MG, Lavoie C., Hum Mutat 34(12), 2013
PMID: 24038957
TMEM106B, the risk gene for frontotemporal dementia, is regulated by the microRNA-132/212 cluster and affects progranulin pathways.
Chen-Plotkin AS, Unger TL, Gallagher MD, Bill E, Kwong LK, Volpicelli-Daley L, Busch JI, Akle S, Grossman M, Van Deerlin V, Trojanowski JQ, Lee VM., J Neurosci 32(33), 2012
PMID: 22895706
Molecular and cellular characterization of novel {alpha}-mannosidosis mutations.
Kuokkanen E, Riise Stensland HM, Smith W, Kjeldsen Buvang E, Van Nguyen L, Nilssen Ø, Heikinheimo P., Hum Mol Genet 20(13), 2011
PMID: 21505070
Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways.
Palmieri M, Impey S, Kang H, di Ronza A, Pelz C, Sardiello M, Ballabio A., Hum Mol Genet 20(19), 2011
PMID: 21752829
Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function.
Belcastro V, Siciliano V, Gregoretti F, Mithbaokar P, Dharmalingam G, Berlingieri S, Iorio F, Oliva G, Polishchuck R, Brunetti-Pierri N, di Bernardo D., Nucleic Acids Res 39(20), 2011
PMID: 21785136
The Mycobacterium bovis bacille Calmette-Guerin phagosome proteome.
Lee BY, Jethwaney D, Schilling B, Clemens DL, Gibson BW, Horwitz MA., Mol Cell Proteomics 9(1), 2010
PMID: 19815536
Impaired lysosomal trimming of N-linked oligosaccharides leads to hyperglycosylation of native lysosomal proteins in mice with alpha-mannosidosis.
Damme M, Morelle W, Schmidt B, Andersson C, Fogh J, Michalski JC, Lübke T., Mol Cell Biol 30(1), 2010
PMID: 19884343
Degradative proteomics and disease mechanisms.
Lanucara F, Brownridge P, Young IS, Whitfield PD, Doherty MK., Proteomics Clin Appl 4(2), 2010
PMID: 21137039
The neuronal ceroid lipofuscinosis protein CLN5: new insights into cellular maturation, transport, and consequences of mutations.
Schmiedt ML, Bessa C, Heine C, Ribeiro MG, Jalanko A, Kyttälä A., Hum Mutat 31(3), 2010
PMID: 20052765
Induction of endosomal/lysosomal pathways in differentiating osteoblasts as revealed by combined proteomic and transcriptomic analyses.
Taniguchi T, Kido S, Yamauchi E, Abe M, Matsumoto T, Taniguchi H., FEBS Lett 584(18), 2010
PMID: 20682313
The proteome of lysosomes.
Schröder BA, Wrocklage C, Hasilik A, Saftig P., Proteomics 10(22), 2010
PMID: 20957757
Proteomics of the lysosome.
Lübke T, Lobel P, Sleat DE., Biochim Biophys Acta 1793(4), 2009
PMID: 18977398
Evolution of organelle-associated protein profiling.
Yan W, Aebersold R, Raines EW., J Proteomics 72(1), 2009
PMID: 19110081
Serine carboxypeptidases in regulation of vasoconstriction and elastogenesis.
Pshezhetsky AV, Hinek A., Trends Cardiovasc Med 19(1), 2009
PMID: 19467448
Molecular characterization and gene disruption of mouse lysosomal putative serine carboxypeptidase 1.
Kollmann K, Damme M, Deuschl F, Kahle J, D'Hooge R, Lüllmann-Rauch R, Lübke T., FEBS J 276(5), 2009
PMID: 19187242
NCU-G1 is a highly glycosylated integral membrane protein of the lysosome.
Schieweck O, Damme M, Schröder B, Hasilik A, Schmidt B, Lübke T., Biochem J 422(1), 2009
PMID: 19489740
Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography.
Lakomek K, Dickmanns A, Kettwig M, Urlaub H, Ficner R, Lübke T., BMC Struct Biol 9(), 2009
PMID: 19706171
Novel interactions of CLN5 support molecular networking between Neuronal Ceroid Lipofuscinosis proteins.
Lyly A, von Schantz C, Heine C, Schmiedt ML, Sipilä T, Jalanko A, Kyttälä A., BMC Cell Biol 10(), 2009
PMID: 19941651
The mannose 6-phosphate glycoprotein proteome.
Sleat DE, Della Valle MC, Zheng H, Moore DF, Lobel P., J Proteome Res 7(7), 2008
PMID: 18507433
Cellular repressor of E1A-stimulated genes is a bona fide lysosomal protein which undergoes proteolytic maturation during its biosynthesis.
Schähs P, Weidinger P, Probst OC, Svoboda B, Stadlmann J, Beug H, Waerner T, Mach L., Exp Cell Res 314(16), 2008
PMID: 18621046
The human urine mannose 6-phosphate glycoproteome.
Sleat DE, Zheng H, Lobel P., Biochim Biophys Acta 1774(3), 2007
PMID: 17258946
Biochemical characterization and lysosomal localization of the mannose-6-phosphate protein p76 (hypothetical protein LOC196463).
Jensen AG, Chemali M, Chapel A, Kieffer-Jaquinod S, Jadot M, Garin J, Journet A., Biochem J 402(3), 2007
PMID: 17105447
The yeast protein sorting pathway as an experimental model for lysosomal trafficking.
Hoffman-Sommer M, Rytka J., Expert Rev Clin Immunol 3(2), 2007
PMID: 20477111
Characterization and subcellular localization of human neutral class II alpha-mannosidase [corrected].
Kuokkanen E, Smith W, Mäkinen M, Tuominen H, Puhka M, Jokitalo E, Duvet S, Berg T, Heikinheimo P., Glycobiology 17(10), 2007
PMID: 17681998
Lysosomal proteomics and disease.
Sleat DE, Jadot M, Lobel P., Proteomics - Clinical Applications 1(9), 2007
PMID: C1894
Identification of sites of mannose 6-phosphorylation on lysosomal proteins.
Sleat DE, Zheng H, Qian M, Lobel P., Mol Cell Proteomics 5(4), 2006
PMID: 16399764
Tissue expression of the novel serine carboxypeptidase Scpep1.
Lee TH, Streb JW, Georger MA, Miano JM., J Histochem Cytochem 54(6), 2006
PMID: 16461364
Intracellular localization of p40, a protein identified in a preparation of lysosomal membranes.
Boonen M, Hamer I, Boussac M, Delsaute AF, Flamion B, Garin J, Jadot M., Biochem J 395(1), 2006
PMID: 16367739
Identification and validation of mannose 6-phosphate glycoproteins in human plasma reveal a wide range of lysosomal and non-lysosomal proteins.
Sleat DE, Wang Y, Sohar I, Lackland H, Li Y, Li H, Zheng H, Lobel P., Mol Cell Proteomics 5(10), 2006
PMID: 16709564
A novel approach and protocol for discovering extremely low-abundance proteins in serum.
Tanaka Y, Akiyama H, Kuroda T, Jung G, Tanahashi K, Sugaya H, Utsumi J, Kawasaki H, Hirano H., Proteomics 6(17), 2006
PMID: 16878292

50 References

Daten bereitgestellt von Europe PubMed Central.

Tissue fractionation studies. 6. Intracellular distribution patterns of enzymes in rat-liver tissue.
DE DUVE C, PRESSMAN BC, GIANETTO R, WATTIAUX R, APPELMANS F., Biochem. J. 60(4), 1955
PMID: 13249955

Scriver, 2000
Cysteine proteinases mediate extracellular prohormone processing in the thyroid.
Brix K, Linke M, Tepel C, Herzog V., Biol. Chem. 382(5), 2001
PMID: 11517924
Functions of cathepsin K in bone resorption. Lessons from cathepsin K deficient mice.
Saftig P, Hunziker E, Everts V, Jones S, Boyde A, Wehmeyer O, Suter A, von Figura K., Adv. Exp. Med. Biol. 477(), 2000
PMID: 10849757
Lysosomal enzymes and their receptors.
von Figura K, Hasilik A., Annu. Rev. Biochem. 55(), 1986
PMID: 2943218
Towards a human repertoire of monocytic lysosomal proteins.
Journet A, Chapel A, Kieffer S, Louwagie M, Luche S, Garin J., Electrophoresis 21(16), 2000
PMID: 11079561
Proteomic analysis of human lysosomes: application to monocytic and breast cancer cells.
Journet A, Chapel A, Kieffer S, Roux F, Garin J., Proteomics 2(8), 2002
PMID: 12203898
Targeted disruption of the M(r) 46,000 mannose 6-phosphate receptor gene in mice results in misrouting of lysosomal proteins.
Koster A, Saftig P, Matzner U, von Figura K, Peters C, Pohlmann R., EMBO J. 12(13), 1993
PMID: 8262064
Metachromatic leukodystrophy: arylsulfatase-A deficiency in skin fibroblast cultures.
Porter MT, Fluharty AL, Kihara H., Proc. Natl. Acad. Sci. U.S.A. 62(3), 1969
PMID: 5257010
Protein measurement with the Folin phenol reagent.
LOWRY OH, ROSEBROUGH NJ, FARR AL, RANDALL RJ., J. Biol. Chem. 193(1), 1951
PMID: 14907713
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
Shevchenko A, Wilm M, Vorm O, Mann M., Anal. Chem. 68(5), 1996
PMID: 8779443
Large-scale analysis of the yeast proteome by multidimensional protein identification technology.
Washburn MP, Wolters D, Yates JR 3rd., Nat. Biotechnol. 19(3), 2001
PMID: 11231557
Role of LAMP-2 in lysosome biogenesis and autophagy.
Eskelinen EL, Illert AL, Tanaka Y, Schwarzmann G, Blanz J, Von Figura K, Saftig P., Mol. Biol. Cell 13(9), 2002
PMID: 12221139
The two mannose 6-phosphate receptors transport distinct complements of lysosomal proteins.
Pohlmann R, Boeker MW, von Figura K., J. Biol. Chem. 270(45), 1995
PMID: 7592993
Human lysosomal protective protein. Glycosylation, intracellular transport, and association with beta-galactosidase in the endoplasmic reticulum.
Morreau H, Galjart NJ, Willemsen R, Gillemans N, Zhou XY, d'Azzo A., J. Biol. Chem. 267(25), 1992
PMID: 1387645
Lysosomal protective protein/cathepsin A. Role of the "linker" domain in catalytic activation.
Bonten EJ, Galjart NJ, Willemsen R, Usmany M, Vlak JM, d'Azzo A., J. Biol. Chem. 270(44), 1995
PMID: 7592859
alpha-Mannosidase from rat epididymal fluid is a ligand for phosphomannosyl receptors on the sperm surface.
Belmonte SA, Challa A, Gutierrez LS, Bertini F, Sosa MA., Int. J. Androl. 21(5), 1998
PMID: 9805243
Identification and characterization of a novel family of mammalian ependymin-related proteins (MERPs) in hematopoietic, nonhematopoietic, and malignant tissues.
Apostolopoulos J, Sparrow RL, McLeod JL, Collier FM, Darcy PK, Slater HR, Ngu C, Gregorio-King CC, Kirkland MA., DNA Cell Biol. 20(10), 2001
PMID: 11749721
Cloning of a novel retinoid-inducible serine carboxypeptidase from vascular smooth muscle cells.
Chen J, Streb JW, Maltby KM, Kitchen CM, Miano JM., J. Biol. Chem. 276(36), 2001
PMID: 11447226
Identification of yeast proteins from two-dimensional gels: working out spot cross-contamination.
Parker KC, Garrels JI, Hines W, Butler EM, McKee AH, Patterson D, Martin S., Electrophoresis 19(11), 1998
PMID: 9740052
Nicastrin is a resident lysosomal membrane protein.
Bagshaw RD, Pasternak SH, Mahuran DJ, Callahan JW., Biochem. Biophys. Res. Commun. 300(3), 2003
PMID: 12507492
Carboxypeptidases C and D.
Remington SJ, Breddam K., Meth. Enzymol. 244(), 1994
PMID: 7845212
A peptidase in human platelets that deamidates tachykinins. Probable identity with the lysosomal "protective protein".
Jackman HL, Tan FL, Tamei H, Beurling-Harbury C, Li XY, Skidgel RA, Erdos EG., J. Biol. Chem. 265(19), 1990
PMID: 1694176
Inactivation of endothelin I by deamidase (lysosomal protective protein).
Jackman HL, Morris PW, Deddish PA, Skidgel RA, Erdos EG., J. Biol. Chem. 267(5), 1992
PMID: 1737744
Molecular defect in combined beta-galactosidase and neuraminidase deficiency in man.
D'Azzo A, Hoogeveen A, Reuser AJ, Robinson D, Galjaard H., Proc. Natl. Acad. Sci. U.S.A. 79(15), 1982
PMID: 6812049
Molecular cloning of p67, a lysosomal membrane glycoprotein from Trypanosoma brucei.
Kelley RJ, Alexander DL, Cowan C, Balber AE, Bangs JD., Mol. Biochem. Parasitol. 98(1), 1999
PMID: 10029306
Developmentally regulated trafficking of the lysosomal membrane protein p67 in Trypanosoma brucei.
Alexander DL, Schwartz KJ, Balber AE, Bangs JD., J. Cell. Sci. 115(Pt 16), 2002
PMID: 12140257
At the acidic edge: emerging functions for lysosomal membrane proteins.
Eskelinen EL, Tanaka Y, Saftig P., Trends Cell Biol. 13(3), 2003
PMID: 12628346
Normal lysosomal morphology and function in LAMP-1-deficient mice.
Andrejewski N, Punnonen EL, Guhde G, Tanaka Y, Lullmann-Rauch R, Hartmann D, von Figura K, Saftig P., J. Biol. Chem. 274(18), 1999
PMID: 10212251
Mice deficient in lysosomal acid phosphatase develop lysosomal storage in the kidney and central nervous system.
Saftig P, Hartmann D, Lullmann-Rauch R, Wolff J, Evers M, Koster A, Hetman M, von Figura K, Peters C., J. Biol. Chem. 272(30), 1997
PMID: 9228031
Accumulation of autophagic vacuoles and cardiomyopathy in LAMP-2-deficient mice.
Tanaka Y, Guhde G, Suter A, Eskelinen EL, Hartmann D, Lullmann-Rauch R, Janssen PM, Blanz J, von Figura K, Saftig P., Nature 406(6798), 2000
PMID: 10972293
Molecular characterization of an ependymin precursor from goldfish brain.
Konigstorfer A, Sterrer S, Eckerskorn C, Lottspeich F, Schmidt R, Hoffmann W., J. Neurochem. 52(1), 1989
PMID: 2908890
Modulation of mouse preimplantation embryo development by acrogranin (epithelin/granulin precursor).
Diaz-Cueto L, Stein P, Jacobs A, Schultz RM, Gerton GL., Dev. Biol. 217(2), 2000
PMID: 10625564
Progranulin is a mediator of the wound response.
He Z, Ong CH, Halper J, Bateman A., Nat. Med. 9(2), 2003
PMID: 12524533
Proliferin secreted by cultured cells binds to mannose 6-phosphate receptors.
Lee SJ, Nathans D., J. Biol. Chem. 263(7), 1988
PMID: 2963825

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