AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling
Dietz K-J, Vogel MO, Viehhauser A (2010)
Protoplasma 245(1-4): 3-14.
Zeitschriftenaufsatz
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Einrichtung
Abstract / Bemerkung
To optimize acclimation responses to environmental growth conditions, plants integrate and weigh a diversity of input signals. Signal integration within the signalling networks occurs at different sites including the level of transcription factor activation. Accumulating evidence assigns a major and diversified role in environmental signal integration to the family of APETALA 2/ethylene response element binding protein (AP2/EREBP) transcription factors. Presently, the Plant Transcription Factor Database 3.0 assigns 147 gene loci to this family in Arabidopsis thaliana, 200 in Populus trichocarpa and 163 in Oryza sativa subsp. japonica as compared to 13 to 14 in unicellular algae http://plntfdb.bio.uni-potsdam.de/v3.0/). AP2/EREBP transcription factors have been implicated in hormone, sugar and redox signalling in context of abiotic stresses such as cold and drought. This review exemplarily addresses present-day knowledge of selected AP2/EREBP with focus on a function in stress signal integration and retrograde signalling and defines AP2/EREBP-linked gene networks from transcriptional profiling-based graphical Gaussian models. The latter approach suggests highly interlinked functions of AP2/EREBPs in retrograde and stress signalling.
Stichworte
Hormone;
Redox;
Transcription factors;
Abiotic stress;
Gaussian models;
AP2/EREBP;
Retrograde signalling
Erscheinungsjahr
2010
Zeitschriftentitel
Protoplasma
Band
245
Ausgabe
1-4
Seite(n)
3-14
ISSN
0033-183X
eISSN
1615-6102
Page URI
https://pub.uni-bielefeld.de/record/1794034
Zitieren
Dietz K-J, Vogel MO, Viehhauser A. AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma. 2010;245(1-4):3-14.
Dietz, K. - J., Vogel, M. O., & Viehhauser, A. (2010). AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma, 245(1-4), 3-14. https://doi.org/10.1007/s00709-010-0142-8
Dietz, Karl-Josef, Vogel, Marc Oliver, and Viehhauser, Andrea. 2010. “AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling”. Protoplasma 245 (1-4): 3-14.
Dietz, K. - J., Vogel, M. O., and Viehhauser, A. (2010). AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma 245, 3-14.
Dietz, K.-J., Vogel, M.O., & Viehhauser, A., 2010. AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma, 245(1-4), p 3-14.
K.-J. Dietz, M.O. Vogel, and A. Viehhauser, “AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling”, Protoplasma, vol. 245, 2010, pp. 3-14.
Dietz, K.-J., Vogel, M.O., Viehhauser, A.: AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma. 245, 3-14 (2010).
Dietz, Karl-Josef, Vogel, Marc Oliver, and Viehhauser, Andrea. “AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling”. Protoplasma 245.1-4 (2010): 3-14.
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Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii.
Gargouri M, Park JJ, Holguin FO, Kim MJ, Wang H, Deshpande RR, Shachar-Hill Y, Hicks LM, Gang DR., J Exp Bot 66(15), 2015
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Transcriptional profiling of Medicago truncatula during Erysiphe pisi infection.
Curto M, Krajinski F, Schlereth A, Rubiales D., Front Plant Sci 6(), 2015
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Häffner E, Konietzki S, Diederichsen E., Plants (Basel) 4(3), 2015
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Sexual development in Plasmodium parasites: knowing when it's time to commit.
Josling GA, Llinás M., Nat Rev Microbiol 13(9), 2015
PMID: 26272409
Josling GA, Llinás M., Nat Rev Microbiol 13(9), 2015
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Comparative transcriptome of rhizome and leaf in Ligusticum Chuanxiong
Song T, Liu ZB, Li JJ, Zhu Qk, Tan R, Chen Js, Zhou Jy, Liao H., Plant Syst Evol 301(8), 2015
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Song T, Liu ZB, Li JJ, Zhu Qk, Tan R, Chen Js, Zhou Jy, Liao H., Plant Syst Evol 301(8), 2015
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Gene-to-metabolite network for biosynthesis of lignans in MeJA-elicited Isatis indigotica hairy root cultures.
Chen R, Li Q, Tan H, Chen J, Xiao Y, Ma R, Gao S, Zerbe P, Chen W, Zhang L., Front Plant Sci 6(), 2015
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Chen R, Li Q, Tan H, Chen J, Xiao Y, Ma R, Gao S, Zerbe P, Chen W, Zhang L., Front Plant Sci 6(), 2015
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Characterization of evolutionarily conserved motifs involved in activity and regulation of the ABA-INSENSITIVE (ABI) 4 transcription factor.
Gregorio J, Hernández-Bernal AF, Cordoba E, León P., Mol Plant 7(2), 2014
PMID: 24046063
Gregorio J, Hernández-Bernal AF, Cordoba E, León P., Mol Plant 7(2), 2014
PMID: 24046063
Physiology and pathophysiology of SLC12A1/2 transporters.
Markadieu N, Delpire E., Pflugers Arch 466(1), 2014
PMID: 24097229
Markadieu N, Delpire E., Pflugers Arch 466(1), 2014
PMID: 24097229
Analysis of Brassica napus ESTs: gene discovery and expression patterns of AP2/ERF-family transcription factors.
Zhuang J, Zhu B., Mol Biol Rep 41(1), 2014
PMID: 24186851
Zhuang J, Zhu B., Mol Biol Rep 41(1), 2014
PMID: 24186851
AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
Horstman A, Willemsen V, Boutilier K, Heidstra R., Trends Plant Sci 19(3), 2014
PMID: 24280109
Horstman A, Willemsen V, Boutilier K, Heidstra R., Trends Plant Sci 19(3), 2014
PMID: 24280109
Redox regulation of transcription factors in plant stress acclimation and development.
Dietz KJ., Antioxid Redox Signal 21(9), 2014
PMID: 24182193
Dietz KJ., Antioxid Redox Signal 21(9), 2014
PMID: 24182193
WRKY transcription factors: Jack of many trades in plants.
Bakshi M, Oelmüller R., Plant Signal Behav 9(2), 2014
PMID: 24492469
Bakshi M, Oelmüller R., Plant Signal Behav 9(2), 2014
PMID: 24492469
Transcriptomic and proteomic analyses of a pale-green durum wheat mutant shows variations in photosystem components and metabolic deficiencies under drought stress.
Peremarti A, Marè C, Aprile A, Roncaglia E, Cattivelli L, Villegas D, Royo C., BMC Genomics 15(), 2014
PMID: 24521234
Peremarti A, Marè C, Aprile A, Roncaglia E, Cattivelli L, Villegas D, Royo C., BMC Genomics 15(), 2014
PMID: 24521234
Molecular characterization of cotton C-repeat/dehydration-responsive element binding factor genes that are involved in response to cold stress.
Ma LF, Zhang JM, Huang GQ, Li Y, Li XB, Zheng Y., Mol Biol Rep 41(7), 2014
PMID: 24566693
Ma LF, Zhang JM, Huang GQ, Li Y, Li XB, Zheng Y., Mol Biol Rep 41(7), 2014
PMID: 24566693
Expression patterns of ERF genes underlying abiotic stresses in di-haploid Populus simonii × P. nigra.
Wang S, Yao W, Wei H, Jiang T, Zhou B., ScientificWorldJournal 2014(), 2014
PMID: 24737991
Wang S, Yao W, Wei H, Jiang T, Zhou B., ScientificWorldJournal 2014(), 2014
PMID: 24737991
Somatic embryogenesis: life and death processes during apical-basal patterning.
Smertenko A, Bozhkov PV., J Exp Bot 65(5), 2014
PMID: 24622953
Smertenko A, Bozhkov PV., J Exp Bot 65(5), 2014
PMID: 24622953
Fast retrograde signaling in response to high light involves metabolite export, MITOGEN-ACTIVATED PROTEIN KINASE6, and AP2/ERF transcription factors in Arabidopsis.
Vogel MO, Moore M, König K, Pecher P, Alsharafa K, Lee J, Dietz KJ., Plant Cell 26(3), 2014
PMID: 24668746
Vogel MO, Moore M, König K, Pecher P, Alsharafa K, Lee J, Dietz KJ., Plant Cell 26(3), 2014
PMID: 24668746
Regulation of the HMOX1 gene by the transcription factor AP-2δ with unique DNA binding site.
Sun L, Zhao Y, Gu S, Mao Y, Ji C, Xin X., Mol Med Rep 10(1), 2014
PMID: 24789576
Sun L, Zhao Y, Gu S, Mao Y, Ji C, Xin X., Mol Med Rep 10(1), 2014
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Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea.
Thamilarasan SK, Park JI, Jung HJ, Nou IS., BMC Genomics 15(), 2014
PMID: 24888752
Thamilarasan SK, Park JI, Jung HJ, Nou IS., BMC Genomics 15(), 2014
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Expression patterns of WRKY genes in di-haploid Populus simonii × P. nigra in response to salinity stress revealed by quantitative real-time PCR and RNA sequencing.
Wang S, Wang J, Yao W, Zhou B, Li R, Jiang T., Plant Cell Rep 33(10), 2014
PMID: 24969399
Wang S, Wang J, Yao W, Zhou B, Li R, Jiang T., Plant Cell Rep 33(10), 2014
PMID: 24969399
Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis.
Piyatrakul P, Yang M, Putranto RA, Pirrello J, Dessailly F, Hu S, Summo M, Theeravatanasuk K, Leclercq J, Kuswanhadi, Montoro P., PLoS One 9(6), 2014
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Piyatrakul P, Yang M, Putranto RA, Pirrello J, Dessailly F, Hu S, Summo M, Theeravatanasuk K, Leclercq J, Kuswanhadi, Montoro P., PLoS One 9(6), 2014
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The potential of transcription factor-based genetic engineering in improving crop tolerance to drought.
Rabara RC, Tripathi P, Rushton PJ., OMICS 18(10), 2014
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Rabara RC, Tripathi P, Rushton PJ., OMICS 18(10), 2014
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Translatome profiling in dormant and nondormant sunflower (Helianthus annuus) seeds highlights post-transcriptional regulation of germination.
Layat E, Leymarie J, El-Maarouf-Bouteau H, Caius J, Langlade N, Bailly C., New Phytol 204(4), 2014
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Layat E, Leymarie J, El-Maarouf-Bouteau H, Caius J, Langlade N, Bailly C., New Phytol 204(4), 2014
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A subset of Arabidopsis RAV transcription factors modulates drought and salt stress responses independent of ABA.
Fu M, Kang HK, Son SH, Kim SK, Nam KH., Plant Cell Physiol 55(11), 2014
PMID: 25189341
Fu M, Kang HK, Son SH, Kim SK, Nam KH., Plant Cell Physiol 55(11), 2014
PMID: 25189341
Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.
Xu P, Kong Y, Song D, Huang C, Li X, Li L., BMC Genomics 15(), 2014
PMID: 25209012
Xu P, Kong Y, Song D, Huang C, Li X, Li L., BMC Genomics 15(), 2014
PMID: 25209012
Identification of the mulberry genes involved in ethylene biosynthesis and signaling pathways and the expression of MaERF-B2-1 and MaERF-B2-2 in the response to flooding stress.
Shang J, Song P, Ma B, Qi X, Zeng Q, Xiang Z, He N., Funct Integr Genomics 14(4), 2014
PMID: 25231943
Shang J, Song P, Ma B, Qi X, Zeng Q, Xiang Z, He N., Funct Integr Genomics 14(4), 2014
PMID: 25231943
Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).
Zhang JZ, Zhao K, Ai XY, Hu CG., BMC Genomics 15(), 2014
PMID: 25308090
Zhang JZ, Zhao K, Ai XY, Hu CG., BMC Genomics 15(), 2014
PMID: 25308090
Arabidopsis RAV1 transcription factor, phosphorylated by SnRK2 kinases, regulates the expression of ABI3, ABI4, and ABI5 during seed germination and early seedling development.
Feng CZ, Chen Y, Wang C, Kong YH, Wu WH, Chen YF., Plant J 80(4), 2014
PMID: 25231920
Feng CZ, Chen Y, Wang C, Kong YH, Wu WH, Chen YF., Plant J 80(4), 2014
PMID: 25231920
Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.).
Lata C, Mishra AK, Muthamilarasan M, Bonthala VS, Khan Y, Prasad M., PLoS One 9(11), 2014
PMID: 25409524
Lata C, Mishra AK, Muthamilarasan M, Bonthala VS, Khan Y, Prasad M., PLoS One 9(11), 2014
PMID: 25409524
Identification of differentially expressed genes relevant to corm formation in Sagittaria trifolia.
Cheng L, Li S, Xu X, Hussain J, Yin J, Zhang Y, Li L, Chen X., PLoS One 8(1), 2013
PMID: 23359383
Cheng L, Li S, Xu X, Hussain J, Yin J, Zhang Y, Li L, Chen X., PLoS One 8(1), 2013
PMID: 23359383
Intracellular signaling from plastid to nucleus.
Chi W, Sun X, Zhang L., Annu Rev Plant Biol 64(), 2013
PMID: 23394498
Chi W, Sun X, Zhang L., Annu Rev Plant Biol 64(), 2013
PMID: 23394498
Lesion simulating disease1, enhanced disease susceptibility1, and phytoalexin deficient4 conditionally regulate cellular signaling homeostasis, photosynthesis, water use efficiency, and seed yield in Arabidopsis.
Wituszynska W, Slesak I, Vanderauwera S, Szechynska-Hebda M, Kornas A, Van Der Kelen K, Mühlenbock P, Karpinska B, Mackowski S, Van Breusegem F, Karpinski S., Plant Physiol 161(4), 2013
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Wituszynska W, Slesak I, Vanderauwera S, Szechynska-Hebda M, Kornas A, Van Der Kelen K, Mühlenbock P, Karpinska B, Mackowski S, Van Breusegem F, Karpinski S., Plant Physiol 161(4), 2013
PMID: 23400705
Using RNA-Seq to profile soybean seed development from fertilization to maturity.
Jones SI, Vodkin LO., PLoS One 8(3), 2013
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Jones SI, Vodkin LO., PLoS One 8(3), 2013
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Digital gene expression analysis of mature seeds of transgenic maize overexpressing Aspergillus niger phyA2 and its non-transgenic counterpart.
Rao J, Yang L, Wang C, Zhang D, Shi J., GM Crops Food 4(2), 2013
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Rao J, Yang L, Wang C, Zhang D, Shi J., GM Crops Food 4(2), 2013
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Characterization and expression analysis of three CBF/DREB1 transcriptional factor genes from mangrove Avicennia marina.
Peng YL, Wang YS, Cheng H, Sun CC, Wu P, Wang LY, Fei J., Aquat Toxicol 140-141(), 2013
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Peng YL, Wang YS, Cheng H, Sun CC, Wu P, Wang LY, Fei J., Aquat Toxicol 140-141(), 2013
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OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
Serra TS, Figueiredo DD, Cordeiro AM, Almeida DM, Lourenço T, Abreu IA, Sebastián A, Fernandes L, Contreras-Moreira B, Oliveira MM, Saibo NJ., Plant Mol Biol 82(4-5), 2013
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The phytohormone crosstalk paradigm takes center stage in understanding how plants respond to abiotic stresses.
Kohli A, Sreenivasulu N, Lakshmanan P, Kumar PP., Plant Cell Rep 32(7), 2013
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Kohli A, Sreenivasulu N, Lakshmanan P, Kumar PP., Plant Cell Rep 32(7), 2013
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Genome-Wide Analysis of Differentially Expressed Genes Relevant to Rhizome Formation in Lotus Root (Nelumbo nucifera Gaertn).
Cheng L, Li S, Yin J, Li L, Chen X., PLoS One 8(6), 2013
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Cheng L, Li S, Yin J, Li L, Chen X., PLoS One 8(6), 2013
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Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq.
Shamimuzzaman M, Vodkin L., BMC Genomics 14(), 2013
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Shamimuzzaman M, Vodkin L., BMC Genomics 14(), 2013
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Plant omics: genome-wide analysis of ABA repressor1 (ABR1) related genes in rice during abiotic stress and development.
Mishra M, Kanwar P, Singh A, Pandey A, Kapoor S, Pandey GK., OMICS 17(8), 2013
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Mishra M, Kanwar P, Singh A, Pandey A, Kapoor S, Pandey GK., OMICS 17(8), 2013
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Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis).
Song X, Li Y, Hou X., BMC Genomics 14(), 2013
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Song X, Li Y, Hou X., BMC Genomics 14(), 2013
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LaAP2L1, a heterosis-associated AP2/EREBP transcription factor of Larix, increases organ size and final biomass by affecting cell proliferation in Arabidopsis.
Li A, Zhou Y, Jin C, Song W, Chen C, Wang C., Plant Cell Physiol 54(11), 2013
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Li A, Zhou Y, Jin C, Song W, Chen C, Wang C., Plant Cell Physiol 54(11), 2013
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Early transcriptional response of soybean contrasting accessions to root dehydration.
Ferreira Neto JR, Pandolfi V, Guimaraes FC, Benko-Iseppon AM, Romero C, Silva RL, Rodrigues FA, Abdelnoor RV, Nepomuceno AL, Kido EA., PLoS One 8(12), 2013
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Ferreira Neto JR, Pandolfi V, Guimaraes FC, Benko-Iseppon AM, Romero C, Silva RL, Rodrigues FA, Abdelnoor RV, Nepomuceno AL, Kido EA., PLoS One 8(12), 2013
PMID: 24349513
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis.
Liu Z, Kong L, Zhang M, Lv Y, Liu Y, Zou M, Lu G, Cao J, Yu X., PLoS One 8(12), 2013
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Liu Z, Kong L, Zhang M, Lv Y, Liu Y, Zou M, Lu G, Cao J, Yu X., PLoS One 8(12), 2013
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Scheibe R, Dietz KJ., Plant Cell Environ 35(2), 2012
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León P, Gregorio J, Cordoba E., Front Plant Sci 3(), 2012
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Tiwari SB, Belachew A, Ma SF, Young M, Ade J, Shen Y, Marion CM, Holtan HE, Bailey A, Stone JK, Edwards L, Wallace AD, Canales RD, Adam L, Ratcliffe OJ, Repetti PP., Plant J 70(5), 2012
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Tiwari SB, Belachew A, Ma SF, Young M, Ade J, Shen Y, Marion CM, Holtan HE, Bailey A, Stone JK, Edwards L, Wallace AD, Canales RD, Adam L, Ratcliffe OJ, Repetti PP., Plant J 70(5), 2012
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Vogel MO, Gomez-Perez D, Probst N, Dietz KJ., Int J Mol Sci 13(5), 2012
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Vogel MO, Gomez-Perez D, Probst N, Dietz KJ., Int J Mol Sci 13(5), 2012
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In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago.
Soares-Cavalcanti NM, Belarmino LC, Kido EA, Wanderley-Nogueira AC, Bezerra-Neto JP, Cavalcanti-Lira R, Pandolfi V, Nepomuceno AL, Abdelnoor RV, Nascimento LC, Benko-Iseppon AM., Genet Mol Biol 35(1 (suppl)), 2012
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Delta subclass HD-Zip proteins and a B-3 AP2/ERF transcription factor interact with promoter elements required for expression of the Arabidopsis cytochrome c oxidase 5b-1 gene.
Comelli RN, Welchen E, Kim HJ, Hong JC, Gonzalez DH., Plant Mol Biol 80(2), 2012
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Retrograde signaling in plants: from simple to complex scenarios.
Leister D., Front Plant Sci 3(), 2012
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Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize.
Sekhon RS, Childs KL, Santoro N, Foster CE, Buell CR, de Leon N, Kaeppler SM., Plant Physiol 159(4), 2012
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Transcriptome variation along bud development in grapevine (Vitis vinifera L.).
Díaz-Riquelme J, Grimplet J, Martínez-Zapater JM, Carmona MJ., BMC Plant Biol 12(), 2012
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Díaz-Riquelme J, Grimplet J, Martínez-Zapater JM, Carmona MJ., BMC Plant Biol 12(), 2012
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Plant vascular cell division is maintained by an interaction between PXY and ethylene signalling.
Etchells JP, Provost CM, Turner SR., PLoS Genet 8(11), 2012
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Etchells JP, Provost CM, Turner SR., PLoS Genet 8(11), 2012
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Evolution of abscisic acid synthesis and signaling mechanisms.
Hauser F, Waadt R, Schroeder JI., Curr Biol 21(9), 2011
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Dietz KJ., Antioxid Redox Signal 15(4), 2011
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Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses.
Li D, Zhang Y, Hu X, Shen X, Ma L, Su Z, Wang T, Dong J., BMC Plant Biol 11(), 2011
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Li D, Zhang Y, Hu X, Shen X, Ma L, Su Z, Wang T, Dong J., BMC Plant Biol 11(), 2011
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Transcriptomics of shading-induced and NAA-induced abscission in apple (Malus domestica) reveals a shared pathway involving reduced photosynthesis, alterations in carbohydrate transport and signaling and hormone crosstalk.
Zhu H, Dardick CD, Beers EP, Callanhan AM, Xia R, Yuan R., BMC Plant Biol 11(), 2011
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Zhu H, Dardick CD, Beers EP, Callanhan AM, Xia R, Yuan R., BMC Plant Biol 11(), 2011
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Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid.
Dugas DV, Monaco MK, Olsen A, Klein RR, Kumari S, Ware D, Klein PE., BMC Genomics 12(), 2011
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Dugas DV, Monaco MK, Olsen A, Klein RR, Kumari S, Ware D, Klein PE., BMC Genomics 12(), 2011
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Transcription regulation of abiotic stress responses in rice: a combined action of transcription factors and epigenetic mechanisms.
Santos AP, Serra T, Figueiredo DD, Barros P, Lourenço T, Chander S, Oliveira MM, Saibo NJ., OMICS 15(12), 2011
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Santos AP, Serra T, Figueiredo DD, Barros P, Lourenço T, Chander S, Oliveira MM, Saibo NJ., OMICS 15(12), 2011
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AUTHOR UNKNOWN, 0
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