Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications

Ros R, Eckel R, Bartels FW, Sischka A, Baumgarth B, Wilking SD, Pühler A, Sewald N, Becker A, Anselmetti D (2004)
Journal of Biotechnology 112(1-2): 5-12.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
URN
urn:nbn:de:0070-pub-17731486
Autor*in
Ros, Robert; Eckel, Rainer; Bartels, Frank Wilco; Sischka, AndyUniBi; Baumgarth, Birgit; Wilking, Sven David; Pühler, AlfredUniBi ; Sewald, NorbertUniBi ; Becker, Anke; Anselmetti, DarioUniBi
Einrichtung
Fakultät für Biologie
Fakultät für Chemie > Organische Chemie III
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Fakultät für Physik > AG Biophysik und angewandte Nanowissenschaften
Centrum für Biotechnologie > Arbeitsgruppe D. Anselmetti
Abstract / Bemerkung
Recent developments in single molecule force spectroscopy (SMFS) allow direct observation and measurements of forces that hold protein-DNA complexes together. Furthermore, the mechanics of double-stranded (ds) DNA molecules in the presence of small binding ligands can be detected. The results elucidate molecular binding mechanisms and open the way for ultra sensitive and powerful biosensor applications.
Stichworte
Optical tweezers; Single molecule force spectroscopy; Atomic force microscopy; Ligand–DNA interaction
Erscheinungsjahr
2004
Zeitschriftentitel
Journal of Biotechnology
Band
112
Ausgabe
1-2
Seite(n)
5-12
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1773148

Zitieren

Ros R, Eckel R, Bartels FW, et al. Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology. 2004;112(1-2):5-12.
Ros, R., Eckel, R., Bartels, F. W., Sischka, A., Baumgarth, B., Wilking, S. D., Pühler, A., et al. (2004). Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology, 112(1-2), 5-12. https://doi.org/10.1016/j.jbiotec.2004.04.029
Ros, Robert, Eckel, Rainer, Bartels, Frank Wilco, Sischka, Andy, Baumgarth, Birgit, Wilking, Sven David, Pühler, Alfred, Sewald, Norbert, Becker, Anke, and Anselmetti, Dario. 2004. “Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications”. Journal of Biotechnology 112 (1-2): 5-12.
Ros, R., Eckel, R., Bartels, F. W., Sischka, A., Baumgarth, B., Wilking, S. D., Pühler, A., Sewald, N., Becker, A., and Anselmetti, D. (2004). Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology 112, 5-12.
Ros, R., et al., 2004. Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology, 112(1-2), p 5-12.
R. Ros, et al., “Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications”, Journal of Biotechnology, vol. 112, 2004, pp. 5-12.
Ros, R., Eckel, R., Bartels, F.W., Sischka, A., Baumgarth, B., Wilking, S.D., Pühler, A., Sewald, N., Becker, A., Anselmetti, D.: Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology. 112, 5-12 (2004).
Ros, Robert, Eckel, Rainer, Bartels, Frank Wilco, Sischka, Andy, Baumgarth, Birgit, Wilking, Sven David, Pühler, Alfred, Sewald, Norbert, Becker, Anke, and Anselmetti, Dario. “Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications”. Journal of Biotechnology 112.1-2 (2004): 5-12.
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13 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Recent Developments in the Interactions of Classic Intercalated Ruthenium Compounds: [Ru(bpy)₂dppz]2+ and [Ru(phen)₂dppz]2+ with a DNA Molecule.
Jia F, Wang S, Man Y, Kumar P, Liu B., Molecules 24(4), 2019
PMID: 30791625
Microstructure arrays of DNA using topographic control.
Cha YJ, Park SM, You R, Kim H, Yoon DK., Nat Commun 10(1), 2019
PMID: 31175307
The Role of Single-Molecule Force Spectroscopy in Unraveling Typical and Autoimmune Heparin-induced Thrombocytopenia.
Bui VC, Nguyen TH., Int J Mol Sci 19(4), 2018
PMID: 29614814
Single-molecule force spectroscopy applied to heparin-induced thrombocytopenia.
Nguyen TH., J Mol Recognit 30(3), 2017
PMID: 27790761
Control of Periodic Zigzag Structures of DNA by a Simple Shearing Method.
Cha YJ, Yoon DK., Adv Mater 29(3), 2017
PMID: 27862385
Mechanisms of small molecule-DNA interactions probed by single-molecule force spectroscopy.
Almaqwashi AA, Paramanathan T, Rouzina I, Williams MC., Nucleic Acids Res 44(9), 2016
PMID: 27085806
Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis.
Chang JC, Fok PW, Chou T., Biophys J 109(5), 2015
PMID: 26331254
Analysis of DNA interactions using single-molecule force spectroscopy.
Ritzefeld M, Walhorn V, Anselmetti D, Sewald N., Amino Acids 44(6), 2013
PMID: 23468137
Direct observation method of individual single-stranded DNA molecules using fluorescent replication protein A.
Oshige M, Kawasaki S, Takano H, Yamaguchi K, Kurita H, Mizuno T, Matsuura S, Mizuno A, Katsura S., J Fluoresc 21(3), 2011
PMID: 21225324
Torsional sensing of small-molecule binding using magnetic tweezers.
Lipfert J, Klijnhout S, Dekker NH., Nucleic Acids Res 38(20), 2010
PMID: 20624816
Scanning probe microscopy in the field of drug delivery.
Turner YT, Roberts CJ, Davies MC., Adv Drug Deliv Rev 59(14), 2007
PMID: 17920719
Single-molecule experiments in biological physics: methods and applications.
Ritort F., J Phys Condens Matter 18(32), 2006
PMID: 21690856
Hierarchical mechanochemical switches in angiostatin.
Grandi F, Sandal M, Guarguaglini G, Capriotti E, Casadio R, Samorì B., Chembiochem 7(11), 2006
PMID: 16991168

39 References

Daten bereitgestellt von Europe PubMed Central.

Single molecule DNA biophysics with atomic force mictroscopy
Anselmetti, Single Mol. 1(), 2000
Optical trapping and manipulation of neutral particles using lasers.
Ashkin A., Proc. Natl. Acad. Sci. U.S.A. 94(10), 1997
PMID: 9144154
Observation of a single-beam gradient force optical trap for dielectric particles.
Ashkin A, Dziedzic JM, Bjorkholm JE, Chu S., Opt Lett 11(5), 1986
PMID: 19730608
Specific binding of the regulatory protein ExpG to promoter regions of the galactoglucan biosynthesis gene cluster of Sinorhizobium meliloti--a combined molecular biology and force spectroscopy investigation.
Bartels FW, Baumgarth B, Anselmetti D, Ros R, Becker A., J. Struct. Biol. 143(2), 2003
PMID: 12972351
Single-molecule manipulation of double-stranded DNA using optical tweezers: interaction studies of DNA with RecA and YOYO-1.
Bennink ML, Scharer OD, Kanaar R, Sakata-Sogawa K, Schins JM, Kanger JS, de Grooth BG, Greve J., Cytometry 36(3), 1999
PMID: 10404969
Atomic force microscope.
Binnig G, Quate CF, Gerber C., Phys. Rev. Lett. 56(9), 1986
PMID: 10033323
Entropic elasticity of lambda-phage DNA.
Bustamante C, Marko JF, Siggia ED, Smith S., Science 265(5178), 1994
PMID: 8079175
Grabbing the cat by the tail: manipulating molecules one by one.
Bustamante C, Macosko JC, Wuite GJ., Nat. Rev. Mol. Cell Biol. 1(2), 2000
PMID: 11253365
Single-molecule studies of DNA mechanics.
Bustamante C, Smith SB, Liphardt J, Smith D., Curr. Opin. Struct. Biol. 10(3), 2000
PMID: 10851197
DNA: an extensible molecule.
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy JL, Chatenay D, Caron F., Science 271(5250), 1996
PMID: 8628993
Specific antigen/antibody interactions measured by force microscopy.
Dammer U, Hegner M, Anselmetti D, Wagner P, Dreier M, Huber W, Guntherodt HJ., Biophys. J. 70(5), 1996
PMID: 9172770
Identification of binding mechanisms in single molecule-DNA complexes.
Eckel R, Ros R, Ros A, Wilking SD, Sewald N, Anselmetti D., Biophys. J. 85(3), 2003
PMID: 12944309
Probing the relation between force--lifetime--and chemistry in single molecular bonds.
Evans E., Annu Rev Biophys Biomol Struct 30(), 2001
PMID: 11340054
Dynamic strength of molecular adhesion bonds.
Evans E, Ritchie K., Biophys. J. 72(4), 1997
PMID: 9083660
Dynamic force spectroscopy: optimized data analysis.
Evstigneev M, Reimann P., Phys Rev E Stat Nonlin Soft Matter Phys 68(4 Pt 2), 2003
PMID: 14682989
Adhesion forces between individual ligand-receptor pairs.
Florin EL, Moy VT, Gaub HE., Science 264(5157), 1994
PMID: 8153628
Force-mediated kinetics of single P-selectin/ligand complexes observed by atomic force microscopy.
Fritz J, Katopodis AG, Kolbinger F, Anselmetti D., Proc. Natl. Acad. Sci. U.S.A. 95(21), 1998
PMID: 9770478
Radiation forces and momenta in dielectric media
Gordon, Phys. Rev. A 8(), 1973
Detection and localization of individual antibody-antigen recognition events by atomic force microscopy.
Hinterdorfer P, Baumgartner W, Gruber HJ, Schilcher K, Schindler H., Proc. Natl. Acad. Sci. U.S.A. 93(8), 1996
PMID: 8622961
DNA mechanics affected by small DNA intercalating ligands
Husale, Single Mol. 3(), 2002
Probing protein-DNA interactions by unzipping a single DNA double helix.
Koch SJ, Shundrovsky A, Jantzen BC, Wang MD., Biophys. J. 83(2), 2002
PMID: 12124289
Dynamic force spectroscopy of protein-DNA interactions by unzipping DNA.
Koch SJ, Wang MD., Phys. Rev. Lett. 91(2), 2003
PMID: 12906513
Cisplatin changes the mechanics of single DNA molecules
Krautbauer, Angew. Chem. Int. Ed. 39(), 2000
Mechanical fingerprints of DNA drug complexes
Krautbauer, Single Mol. 3(), 2002
Discriminating small molecule DNA binding modes by single molecule force spectroscopy.
Krautbauer R, Pope LH, Schrader TE, Allen S, Gaub HE., FEBS Lett. 510(3), 2002
PMID: 11801245
Direct measurement of the forces between complementary strands of DNA.
Lee GU, Chrisey LA, Colton RJ., Science 266(5186), 1994
PMID: 7973628
Sensing discrete streptavidin–biotin interactions with atomic force microscopy
Lee, Langmuir 10(), 1993
Mechanical unfolding intermediates in titin modules.
Marszalek PE, Lu H, Li H, Carrion-Vazquez M, Oberhauser AF, Schulten K, Fernandez JM., Nature 402(6757), 1999
PMID: 10573426
Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy.
Merkel R, Nassoy P, Leung A, Ritchie K, Evans E., Nature 397(6714), 1999
PMID: 9892352
Novel optical approach to atomic force microscopy
Meyer, Appl. Phys. Lett. 53(), 1988
Sequence-dependent mechanics of single DNA molecules.
Rief M, Clausen-Schaumann H, Gaub HE., Nat. Struct. Biol. 6(4), 1999
PMID: 10201403
Reversible unfolding of individual titin immunoglobulin domains by AFM.
Rief M, Gautel M, Oesterhelt F, Fernandez JM, Gaub HE., Science 276(5315), 1997
PMID: 9148804
Single Molecule Force Spectroscopy on Polysaccharides by Atomic Force Microscopy
Rief M, Oesterhelt F, Heymann B, Gaub HE., Science 275(5304), 1997
PMID: 9036852
Antigen binding forces of individually addressed single-chain Fv antibody molecules.
Ros R, Schwesinger F, Anselmetti D, Kubon M, Schafer R, Pluckthun A, Tiefenauer L., Proc. Natl. Acad. Sci. U.S.A. 95(13), 1998
PMID: 9636161
Unbinding forces of single antibody-antigen complexes correlate with their thermal dissociation rates.
Schwesinger F, Ros R, Strunz T, Anselmetti D, Guntherodt HJ, Honegger A, Jermutus L, Tiefenauer L, Pluckthun A., Proc. Natl. Acad. Sci. U.S.A. 97(18), 2000
PMID: 10963664

AUTHOR UNKNOWN, 0
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.
Smith SB, Cui Y, Bustamante C., Science 271(5250), 1996
PMID: 8628994
Dynamic force spectroscopy of single DNA molecules.
Strunz T, Oroszlan K, Schafer R, Guntherodt HJ., Proc. Natl. Acad. Sci. U.S.A. 96(20), 1999
PMID: 10500167
Salt dependence of the elasticity and overstretching transition of single DNA molecules.
Wenner JR, Williams MC, Rouzina I, Bloomfield VA., Biophys. J. 82(6), 2002
PMID: 12023240
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