THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI

Selbitschka W, Arnold W, Jording D, KOSIER B, TORO N, Pühler A (1995)
GENE 163(1): 59-64.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Selbitschka, WernerUniBi; Arnold, WalterUniBi; Jording, DorisUniBi; KOSIER, B; TORO, N; Pühler, AlfredUniBi
Einrichtung
Fakultät für Biologie
Abstract / Bemerkung
The insertion sequence (IS) element ISRm2011-2 of Rhizobium meliloti (Rm) is characterized by 19-bp imperfect terminal inverted repeats (three mismatches) and a size of 1053 bp. Upon transposition, ISRm2011-2 generates a putative target duplication of 2 bp. ISRm2011-2 carries two major overlapping open reading frames (ORFA and B) with a coding capacity of 135 and 201 amino acids (aa), respectively, A potential translational frameshifting window (5'-AAAAAAAG) is located in the overlapping region of both ORFs, The putative fusion product of both proteins, which probably represents the mature transposase, has a predicted molecular mass of 35.8 kDa and a pI of 10.5, Comparison of the deduced aa sequence of ORFA with database entries revealed homology to putative transposases of some IS elements of the IS3 family, as well as to eukaryotic transcription factors. The protein encoded by ORFB shows homology to transposases (Tps) of the recently proposed IS630-Tc1 family which includes Tps of both prokaryotic and eukaryotic transposable elements, Analyses of the distribution of ISRm2011-2 in natural Rm populations showed that this IS element is abundant in Rm strains.
Stichworte
TRANSPOSASE; IS3 FAMILY; REPETITIVE SEQUENCES; TARGET DUPLICATION; COPY NUMBER; BACTERIAL POPULATION; DNA SEQUENCE ANALYSIS
Erscheinungsjahr
1995
Zeitschriftentitel
GENE
Band
163
Ausgabe
1
Seite(n)
59-64
ISSN
0378-1119
Page URI
https://pub.uni-bielefeld.de/record/1640027

Zitieren

Selbitschka W, Arnold W, Jording D, KOSIER B, TORO N, Pühler A. THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI. GENE. 1995;163(1):59-64.
Selbitschka, W., Arnold, W., Jording, D., KOSIER, B., TORO, N., & Pühler, A. (1995). THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI. GENE, 163(1), 59-64. https://doi.org/10.1016/0378-1119(95)00371-C
Selbitschka, Werner, Arnold, Walter, Jording, Doris, KOSIER, B, TORO, N, and Pühler, Alfred. 1995. “THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI”. GENE 163 (1): 59-64.
Selbitschka, W., Arnold, W., Jording, D., KOSIER, B., TORO, N., and Pühler, A. (1995). THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI. GENE 163, 59-64.
Selbitschka, W., et al., 1995. THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI. GENE, 163(1), p 59-64.
W. Selbitschka, et al., “THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI”, GENE, vol. 163, 1995, pp. 59-64.
Selbitschka, W., Arnold, W., Jording, D., KOSIER, B., TORO, N., Pühler, A.: THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI. GENE. 163, 59-64 (1995).
Selbitschka, Werner, Arnold, Walter, Jording, Doris, KOSIER, B, TORO, N, and Pühler, Alfred. “THE INSERTION-SEQUENCE ELEMENT ISRM2011-2 BELONGS TO THE IS630-TC1 FAMILY OF TRANSPOSABLE ELEMENTS AND IS ABUNDANT IN RHIZOBIUM-MELILOTI”. GENE 163.1 (1995): 59-64.

24 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Contribution of Mobile Group II Introns to Sinorhizobium meliloti Genome Evolution.
Toro N, Martínez-Abarca F, Molina-Sánchez MD, García-Rodríguez FM, Nisa-Martínez R., Front Microbiol 9(), 2018
PMID: 29670598
Inactivation of group II intron RmInt1 in the Sinorhizobium meliloti genome.
Molina-Sánchez MD, Toro N., Sci Rep 5(), 2015
PMID: 26156864
Complete Genome Sequence of the RmInt1 Group II Intronless Sinorhizobium meliloti Strain RMO17.
Toro N, Martínez-Abarca F, Nisa-Martínez R., Genome Announc 2(5), 2014
PMID: 25301650
In vitro characterization of the splicing efficiency and fidelity of the RmInt1 group II intron as a means of controlling the dispersion of its host mobile element.
Chillón I, Molina-Sánchez MD, Fedorova O, García-Rodríguez FM, Martínez-Abarca F, Toro N., RNA 20(12), 2014
PMID: 25336586
Spread of the group II intron RmInt1 and its insertion sequence target sites in the plant endosymbiont Sinorhizobium meliloti.
Biondi EG, Toro N, Bazzicalupo M, Martínez-Abarca F., Mob Genet Elements 1(1), 2011
PMID: 22016840
Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S. meliloti strains.
Kuhn S, Stiens M, Pühler A, Schlüter A., FEMS Microbiol Ecol 63(1), 2008
PMID: 18034835
An alternative intron-exon pairing scheme implied by unexpected in vitro activities of group II intron RmInt1 from Sinorhizobium meliloti.
Costa M, Michel F, Molina-Sánchez MD, Martinez-Abarca F, Toro N., Biochimie 88(6), 2006
PMID: 16460862
Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains.
Giuntini E, Mengoni A, De Filippo C, Cavalieri D, Aubin-Horth N, Landry CR, Becker A, Bazzicalupo M., BMC Genomics 6(), 2005
PMID: 16283928
Diversity of group II introns in the genome of Sinorhizobium meliloti strain 1021: splicing and mobility of RmInt1.
Toro N, Martínez-Abarca F, Fernández-López M, Muñoz-Adelantado E., Mol Genet Genomics 268(5), 2003
PMID: 12589437
Symbiotic and genetic diversity of Rhizobium galegae isolates collected from the Galega orientalis gene center in the Caucasus.
Andronov EE, Terefework Z, Roumiantseva ML, Dzyubenko NI, Dzyubenko NI, Onichtchouk OP, Kurchak ON, Dresler-Nurmi A, Young JP, Simarov BV, Lindström K., Appl Environ Microbiol 69(2), 2003
PMID: 12571030
Insertion sequence-like elements associated with putative polyhydroxybutyrate regulatory genes in Azotobacter sp. FA8.
Pettinari JM, Chaneton L, Vazquez G, Steinbüchel A, Méndez BS., Plasmid 50(1), 2003
PMID: 12826056
Colony variation in Sinorhizobium meliloti inoculant strain U 45.
Bloem JF, Botha WJ, Law IJ, Steyn PL., Microbiol Res 157(4), 2002
PMID: 12501992
Ectopic transposition of a group II intron in natural bacterial populations.
Muñoz E, Villadas PJ, Toro N., Mol Microbiol 41(3), 2001
PMID: 11532132
High-resolution physical map of the Sinorhizobium meliloti 1021 pSyma megaplasmid.
Barloy-Hubler F, Capela D, Barnett MJ, Kalman S, Federspiel NA, Long SR, Galibert F., J Bacteriol 182(4), 2000
PMID: 10648551
RecA-independent ectopic transposition in vivo of a bacterial group II intron.
Martínez-Abarca F, Toro N., Nucleic Acids Res 28(21), 2000
PMID: 11058141
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD., J Bacteriol 181(5), 1999
PMID: 10049392
A high-density physical map of Sinorhizobium meliloti 1021 chromosome derived from bacterial artificial chromosome library.
Capela D, Barloy-Hubler F, Gatius MT, Gouzy J, Galibert F., Proc Natl Acad Sci U S A 96(16), 1999
PMID: 10430947
ISRm10: a new insertion sequence of Sinorhizobium meliloti: nucleotide sequence and geographic distribution.
Biondi EG, Fancelli S, Bazzicalupo M., FEMS Microbiol Lett 181(1), 1999
PMID: 10564804
ISRm4-1 and ISRm9, two novel insertion sequences from Sinorhizobium meliloti.
Zekri S, Soto MJ, Toro N., Gene 207(1), 1998
PMID: 9511748
Characterization of rhizobia homologues of Sinorhizobium meliloti insertion sequences ISRm3 and ISRm4
Villadas PJ, Burgos P, Rodriquez-Navarro DN, Temprano F, Toro N., FEMS Microbiol Ecol 25(4), 1998
PMID: IND21814442
Characterization and splicing in vivo of a Sinorhizobium meliloti group II intron associated with particular insertion sequences of the IS630-Tc1/IS3 retroposon superfamily.
Martínez-Abarca F, Zekri S, Toro N., Mol Microbiol 28(6), 1998
PMID: 9680217
Three insertion sequences from the cyanobacterium Synechocystis PCC6803 support the occurrence of horizontal DNA transfer among bacteria.
Cassier-Chauvat C, Poncelet M, Chauvat F., Gene 195(2), 1997
PMID: 9305771
ISRf1, a transposable insertion sequence from Sinorhizobium fredii.
Vinardell JM, Ollero FJ, Krishnan HB, del Rosario Espuny M, Villalobo E, Pueppke SG, Ruiz-Sainz JE., Gene 204(1-2), 1997
PMID: 9434166
Comparative analysis of the genetic structure of a Rhizobium meliloti field population before and after environmental release of the highly competitive R. meliloti strain GR4.
Villadas PJ, Burgos P, Jording D, Selbitschka W, Puhler A, Toro N., FEMS Microbiol Ecol 21(1), 1996
PMID: IND20548243

22 References

Daten bereitgestellt von Europe PubMed Central.

Characterization of the IS895 family of insertion sequences from the cyanobacterium Anabaena sp. strain PCC 7120.
Alam J, Vrba JM, Cai Y, Martin JA, Weislo LJ, Curtis SE., J. Bacteriol. 173(18), 1991
PMID: 1653219
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712

Berg, 1989
The molecular basis of the undulated/Pax-1 mutation.
Chalepakis G, Fritsch R, Fickenscher H, Deutsch U, Goulding M, Gruss P., Cell 66(5), 1991
PMID: 1889089
Translational frameshifting in the control of transposition in bacteria.
Chandler M, Fayet O., Mol. Microbiol. 7(4), 1993
PMID: 8384687
A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common “D35E” motif
Doak, 1994
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences.
Dodd IB, Egan JB., Nucleic Acids Res. 18(17), 1990
PMID: 2402433
Functional similarities between retroviruses and the IS3 family of bacterial insertion sequences?
Fayet O, Ramond P, Polard P, Prere MF, Chandler M., Mol. Microbiol. 4(10), 1990
PMID: 1963920
Polar mutations in lac, gal and phage lambda consist of a few IS-DNA sequences inserted with either orientation.
Fiandt M, Szybalski W, Malamy MH., Mol. Gen. Genet. 119(3), 1972
PMID: 4567156
Mobile Minos elements from Drosophila hydei encode a two-exon transposase with similarity to the paired DNA-binding domain
Franz, 1994
Pax in development.
Gruss P, Walther C., Cell 69(5), 1992
PMID: 1591773
Retroviral integrase domains: DNA binding and the recognition of LTR sequences.
Khan E, Mack JP, Katz RA, Kulkosky J, Skalka AM., Nucleic Acids Res. 19(4), 1991
PMID: 1850126
Monitoring the diversity of Rhizobium meliloti field and microcosm isolates with a novel rapid genotyping method using insertion elements
Kosier, Mol. Ecol. 2(), 1993
Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases.
Kulkosky J, Jones KS, Katz RA, Mack JP, Skalka AM., Mol. Cell. Biol. 12(5), 1992
PMID: 1314954
Bacterial transposases and retroviral integrases.
Polard P, Chandler M., Mol. Microbiol. 15(1), 1995
PMID: 7752887
Transposition in Shigella dysenteriae: isolation and analysis of IS911, a new member of the IS3 group of insertion sequences.
Prere MF, Chandler M, Fayet O., J. Bacteriol. 172(7), 1990
PMID: 2163395
DNA sequencing with chain-terminating inhibitors
Sanger, 1977
Insertion sequence (IS) elements as natural constituents of the genomes of the Gram-negative Rhizobiaceae and their use as a tool in ecological studies
Selbitschka, 1995
Isolation and characterization of insertion sequence elements from gram-negative bacteria by using new broad-host-range, positive selection vectors.
Simon R, Hotte B, Klauke B, Kosier B., J. Bacteriol. 173(4), 1991
PMID: 1847366
The current status and portability of our sequence handling software.
Staden R., Nucleic Acids Res. 14(1), 1986
PMID: 3511446
Site-specific transposition of insertion sequence IS630.
Tenzen T, Matsutani S, Ohtsubo E., J. Bacteriol. 172(7), 1990
PMID: 2163390
Isolation of a novel IS3 group insertion element and construction of an integration vector for Lactobacillus spp.
Walker DC, Klaenhammer TR., J. Bacteriol. 176(17), 1994
PMID: 8071209
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