Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems

Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lünsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Pühler A, Timmis KN (2003)
Journal of Biotechnology 106(2-3): 215-220.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
In this paper, we provide background to the genome sequencing project of Alcanivorax borkumensis, which is a marine bacterium that uses exclusively petroleum oil hydrocarbons as sources of carbon and energy (therefore designated "hydrocarbonoclastic"). It is found in low numbers in all oceans of the world and in high numbers in oil-contaminated waters. Its ubiquity and unusual physiology suggest it is globally important in the removal of hydrocarbons from polluted marine systems. A functional genomics analysis of Alcanivorax borkumensis strain SK2 was recently initiated, and its genome sequence has just been completed. Annotation of the genome, metabolome modelling, and functional genomics, will soon reveal important insights into the genomic basis of the properties and physiology of this fascinating and globally important bacterium. (C) 2003 Elsevier B.V. All rights reserved.
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Zeitschriftentitel
Journal of Biotechnology
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106
Ausgabe
2-3
Seite(n)
215-220
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Golyshin PN, Martins Dos Santos VA, Kaiser O, et al. Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology. 2003;106(2-3):215-220.
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., et al. (2003). Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology, 106(2-3), 215-220. doi:10.1016/j.jbiotec.2003.07.013
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Pühler, A., et al. (2003). Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology 106, 215-220.
Golyshin, P.N., et al., 2003. Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology, 106(2-3), p 215-220.
P.N. Golyshin, et al., “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”, Journal of Biotechnology, vol. 106, 2003, pp. 215-220.
Golyshin, P.N., Martins Dos Santos, V.A., Kaiser, O., Ferrer, M., Sabirova, Y.S., Lünsdorf, H., Chernikova, T.N., Golyshina, O.V., Yakimov, M.M., Pühler, A., Timmis, K.N.: Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology. 106, 215-220 (2003).
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Pühler, Alfred, and Timmis, K. N. “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”. Journal of Biotechnology 106.2-3 (2003): 215-220.

36 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Biodegradation of n-alkanes on oil-seawater interfaces at different temperatures and microbial communities associated with the degradation.
Lofthus S, Netzer R, Lewin AS, Heggeset TMB, Haugen T, Brakstad OG., Biodegradation 29(2), 2018
PMID: 29397457
Rapid detection of microbial cell abundance in aquatic systems.
Rocha AM, Yuan Q, Close DM, O'Dell KB, Fortney JL, Wu J, Hazen TC., Biosens Bioelectron 85(), 2016
PMID: 27315516
Hydrocarbonoclastic Alcanivorax Isolates Exhibit Different Physiological and Expression Responses to n-dodecane.
Barbato M, Scoma A, Mapelli F, De Smet R, Banat IM, Daffonchio D, Boon N, Borin S., Front Microbiol 7(), 2016
PMID: 28066376
Metagenomics for the discovery of novel biosurfactants of environmental interest from marine ecosystems.
Jackson SA, Borchert E, O'Gara F, Dobson AD., Curr Opin Biotechnol 33(), 2015
PMID: 25812477
Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source.
Antoniou E, Fodelianakis S, Korkakaki E, Kalogerakis N., Front Microbiol 6(), 2015
PMID: 25904907
The hydrocarbon-degrading marine bacterium Cobetia sp. strain MM1IDA2H-1 produces a biosurfactant that interferes with quorum sensing of fish pathogens by signal hijacking.
Ibacache-Quiroga C, Ojeda J, Espinoza-Vergara G, Olivero P, Cuellar M, Dinamarca MA., Microb Biotechnol 6(4), 2013
PMID: 23279885
Adaptation of the hydrocarbonoclastic bacterium Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds: a physiological and transcriptomic approach.
Naether DJ, Slawtschew S, Stasik S, Engel M, Olzog M, Wick LY, Timmis KN, Heipieper HJ., Appl Environ Microbiol 79(14), 2013
PMID: 23645199
Biochemical characterization of two recombinant ferredoxin reductases from Alcanivorax borkumensis SK2.
Teimoori A, Ahmadian S, Madadkar-Sobhani A., Biotechnol Appl Biochem 59(6), 2012
PMID: 23586955
The 'LipoYeasts' project: using the oleaginous yeast Yarrowia lipolytica in combination with specific bacterial genes for the bioconversion of lipids, fats and oils into high-value products.
Sabirova JS, Haddouche R, Van Bogaert I, Mulaa F, Verstraete W, Timmis K, Schmidt-Dannert C, Nicaud J, Soetaert W., Microb Biotechnol 4(1), 2011
PMID: 21255371
Rubredoxin reductase from Alcanivorax borkumensis: expression and characterization.
Teimoori A, Ahmadian S, Madadkar-Sobhani A, Bambai B., Biotechnol Prog 27(5), 2011
PMID: 21714118
Production of a recombinant alkane hydroxylase (AlkB2) from Alcanivorax borkumensis.
Miri M, Bambai B, Tabandeh F, Sadeghizadeh M, Kamali N., Biotechnol Lett 32(4), 2010
PMID: 19953301
Isolation and characterization of biosurfactant-producing Alcanivorax strains: hydrocarbon accession strategies and alkane hydroxylase gene analysis.
Olivera NL, Nievas ML, Lozada M, Del Prado G, Dionisi HM, Siñeriz F., Res Microbiol 160(1), 2009
PMID: 18983915
Integrative approaches for assessing the ecological sustainability of in situ bioremediation.
Pandey J, Chauhan A, Jain RK., FEMS Microbiol Rev 33(2), 2009
PMID: 19178567
Bacterial biofilm-community selection during autohydrogenotrophic reduction of nitrate and perchlorate in ion-exchange brine.
Ahn CH, Oh H, Ki D, Van Ginkel SW, Rittmann BE, Park J., Appl Microbiol Biotechnol 81(6), 2009
PMID: 19066883
Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials.
Gertler C, Gerdts G, Timmis KN, Yakimov MM, Golyshin PN., J Appl Microbiol 107(2), 2009
PMID: 19302488
Hydrocarbon-degrading bacteria: the oil-spill clean-up crew.
Brooijmans RJ, Pastink MI, Siezen RJ., Microb Biotechnol 2(6), 2009
PMID: 21255292
Global features of the Alcanivorax borkumensis SK2 genome.
Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, Tümmler B, Ussery DW., Environ Microbiol 10(3), 2008
PMID: 18081853
Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant wastes.
Stenuit B, Eyers L, Schuler L, Agathos SN, George I., Biotechnol Adv 26(6), 2008
PMID: 18725284
Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.
Kalscheuer R, Stöveken T, Malkus U, Reichelt R, Golyshin PN, Sabirova JS, Ferrer M, Timmis KN, Steinbüchel A., J Bacteriol 189(3), 2007
PMID: 17122340
Ocean's elevenses.
Seth-Smith H., Nat Rev Microbiol 5(1), 2007
PMID: 17171852
Effects of spilled oil on bacterial communities of mediterranean coastal anoxic sediments chronically subjected to oil hydrocarbon contamination.
Miralles G, Nérini D, Manté C, Acquaviva M, Doumenq P, Michotey V, Nazaret S, Bertrand JC, Cuny P., Microb Ecol 54(4), 2007
PMID: 17334965
Obligate oil-degrading marine bacteria.
Yakimov MM, Timmis KN, Golyshin PN., Curr Opin Biotechnol 18(3), 2007
PMID: 17493798
Marine microorganisms make a meal of oil.
Head IM, Jones DM, Röling WF., Nat Rev Microbiol 4(3), 2006
PMID: 16489346
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN., Nat Biotechnol 24(8), 2006
PMID: 16878126
Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2.
Sabirova JS, Ferrer M, Lünsdorf H, Wray V, Kalscheuer R, Steinbüchel A, Timmis KN, Golyshin PN., J Bacteriol 188(24), 2006
PMID: 16997960
Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin.
Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Martins Dos Santos VA, Yakimov MM, Timmis KN, Golyshin PN., Chem Biol 12(8), 2005
PMID: 16125101

15 References

Daten bereitgestellt von Europe PubMed Central.

Novel glycine containing glucolipids from the alkane using bacterium Alcanivorax borkumensis.
Abraham WR, Meyer H, Yakimov M., Biochim. Biophys. Acta 1393(1), 1998
PMID: 9714737
Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments.
Dyksterhouse SE, Gray JP, Herwig RP, Lara JC, Staley JT., Int. J. Syst. Bacteriol. 45(1), 1995
PMID: 7857792
Effect of novel biosurfactants on biodegradation of polychlorinated biphenyls by pure and mixed bacterial cultures.
Golyshin PM, Fredrickson HL, Giuliano L, Rothmel R, Timmis KN, Yakimov MM., New Microbiol. 22(3), 1999
PMID: 10423745
Oleiphilaceae fam. nov., to include Oleiphilus messinensis gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons.
Golyshin PN, Chernikova TN, Abraham WR, Lunsdorf H, Timmis KN, Yakimov MM., Int. J. Syst. Evol. Microbiol. 52(Pt 3), 2002
PMID: 12054256
Petroleum biodegradation in marine environments.
Harayama S, Kishira H, Kasai Y, Shutsubo K., J. Mol. Microbiol. Biotechnol. 1(1), 1999
PMID: 10941786
Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov.
Hedlund BP, Geiselbrecht AD, Bair TJ, Staley JT., Appl. Environ. Microbiol. 65(1), 1999
PMID: 9872786
Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident.
Kasai Y, Kishira H, Syutsubo K, Harayama S., Environ. Microbiol. 3(4), 2001
PMID: 11359510
Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water.
Kasai Y, Kishira H, Sasaki T, Syutsubo K, Watanabe K, Harayama S., Environ. Microbiol. 4(3), 2002
PMID: 12000314
Marine biosurfactants IV production characterization and biosynthesis of an anionic glucose lipid from marine bacterial strain MM1
Passeri, Appl. Microbiol. Biotechnol. 37(), 1992
Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation.
Roling WF, Milner MG, Jones DM, Lee K, Daniel F, Swannell RJ, Head IM., Appl. Environ. Microbiol. 68(11), 2002
PMID: 12406747
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium.
Yakimov MM, Golyshin PN, Lang S, Moore ER, Abraham WR, Lunsdorf H, Timmis KN., Int. J. Syst. Bacteriol. 48 Pt 2(), 1998
PMID: 9731272

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