What can bacterial genome research teach us about bacteria-plant interactions?
Pühler A, Arlat M, Becker A, Gottfert M, Morrissey JP, O'Gara F (2004)
Current Opinion in Plant Biology 7(2): 137-147.
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Autor*in
Pühler, AlfredUniBi ;
Arlat, M;
Becker, A;
Gottfert, M;
Morrissey, JP;
O'Gara, F
Einrichtung
Abstract / Bemerkung
Biological research is changing dramatically. Genomic and post-genomic research is responsible for the accumulation of enormous datasets, which allow the formation of holistic views of the organisms under investigation. In the field of microbiology, bacteria represent ideal candidates for this new development. It is relatively easy to sequence the genomes of bacteria, to analyse their transcriptomes and to collect information at the proteomic level. Genome research on symbiotic, pathogenic and associative bacteria is providing important information on bacteria-plant interactions, especially on type-III secretion systems (TTSS) and their role in the interaction of bacteria with plants.
Erscheinungsjahr
2004
Zeitschriftentitel
Current Opinion in Plant Biology
Band
7
Ausgabe
2
Seite(n)
137-147
ISSN
1369-5266
Page URI
https://pub.uni-bielefeld.de/record/1608254
Zitieren
Pühler A, Arlat M, Becker A, Gottfert M, Morrissey JP, O'Gara F. What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology. 2004;7(2):137-147.
Pühler, A., Arlat, M., Becker, A., Gottfert, M., Morrissey, J. P., & O'Gara, F. (2004). What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology, 7(2), 137-147. https://doi.org/10.1016/j.pbi.2004.01.009
Pühler, Alfred, Arlat, M, Becker, A, Gottfert, M, Morrissey, JP, and O'Gara, F. 2004. “What can bacterial genome research teach us about bacteria-plant interactions?”. Current Opinion in Plant Biology 7 (2): 137-147.
Pühler, A., Arlat, M., Becker, A., Gottfert, M., Morrissey, J. P., and O'Gara, F. (2004). What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology 7, 137-147.
Pühler, A., et al., 2004. What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology, 7(2), p 137-147.
A. Pühler, et al., “What can bacterial genome research teach us about bacteria-plant interactions?”, Current Opinion in Plant Biology, vol. 7, 2004, pp. 137-147.
Pühler, A., Arlat, M., Becker, A., Gottfert, M., Morrissey, J.P., O'Gara, F.: What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology. 7, 137-147 (2004).
Pühler, Alfred, Arlat, M, Becker, A, Gottfert, M, Morrissey, JP, and O'Gara, F. “What can bacterial genome research teach us about bacteria-plant interactions?”. Current Opinion in Plant Biology 7.2 (2004): 137-147.
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The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.
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Oke V, Long SR., Mol. Microbiol. 32(4), 1999
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Milcamps A, Ragatz DM, Lim P, Berger KA, de Bruijn FJ., Microbiology (Reading, Engl.) 144 ( Pt 11)(), 1998
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Transcriptome analysis of Sinorhizobium meliloti during symbiosis.
Ampe F, Kiss E, Sabourdy F, Batut J., Genome Biol. 4(2), 2003
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Ampe F, Kiss E, Sabourdy F, Batut J., Genome Biol. 4(2), 2003
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Berges H, Lauber E, Liebe C, Batut J, Kahn D, de Bruijn FJ, Ampe F., Appl. Environ. Microbiol. 69(2), 2003
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Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
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Guerreiro N, Redmond JW, Rolfe BG, Djordjevic MA., Mol. Plant Microbe Interact. 10(4), 1997
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Guerreiro N, Djordjevic MA, Rolfe BG., Electrophoresis 20(4-5), 1999
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Proteome analysis demonstrates complex replicon and luteolin interactions in pSyma-cured derivatives of Sinorhizobium meliloti strain 2011.
Chen H, Higgins J, Oresnik IJ, Hynes MF, Natera S, Djordjevic MA, Weinman JJ, Rolfe BG., Electrophoresis 21(17), 2000
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Proteome analysis of cultivar-specific interactions between Rhizobium leguminosarum biovar trifolii and subterranean clover cultivar Woogenellup.
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Natera SH, Guerreiro N, Djordjevic MA., Mol. Plant Microbe Interact. 13(9), 2000
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A global analysis of protein expression profiles in Sinorhizobium meliloti: discovery of new genes for nodule occupancy and stress adaptation.
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Djordjevic MA, Chen HC, Natera S, Van Noorden G, Menzel C, Taylor S, Renard C, Geiger O, Weiller GF; Sinorhizobium DNA Sequencing Consortium., Mol. Plant Microbe Interact. 16(6), 2003
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Purcell AH, Hopkins DL., Annu Rev Phytopathol 34(), 1996
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Dow JM, Daniels MJ., Yeast 17(4), 2000
PMID: 11119303
Dow JM, Daniels MJ., Yeast 17(4), 2000
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AUTHOR UNKNOWN, 0
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains.
Bhattacharyya A, Stilwagen S, Ivanova N, D'Souza M, Bernal A, Lykidis A, Kapatral V, Anderson I, Larsen N, Los T, Reznik G, Selkov E Jr, Walunas TL, Feil H, Feil WS, Purcell A, Lassez JL, Hawkins TL, Haselkorn R, Overbeek R, Predki PF, Kyrpides NC., Proc. Natl. Acad. Sci. U.S.A. 99(19), 2002
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Bhattacharyya A, Stilwagen S, Ivanova N, D'Souza M, Bernal A, Lykidis A, Kapatral V, Anderson I, Larsen N, Los T, Reznik G, Selkov E Jr, Walunas TL, Feil H, Feil WS, Purcell A, Lassez JL, Hawkins TL, Haselkorn R, Overbeek R, Predki PF, Kyrpides NC., Proc. Natl. Acad. Sci. U.S.A. 99(19), 2002
PMID: 12205291
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights.
Bhattacharyya A, Stilwagen S, Reznik G, Feil H, Feil WS, Anderson I, Bernal A, D'Souza M, Ivanova N, Kapatral V, Larsen N, Los T, Lykidis A, Selkov E Jr, Walunas TL, Purcell A, Edwards RA, Hawkins T, Haselkorn R, Overbeek R, Kyrpides NC, Predki PF., Genome Res. 12(10), 2002
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Bhattacharyya A, Stilwagen S, Reznik G, Feil H, Feil WS, Anderson I, Bernal A, D'Souza M, Ivanova N, Kapatral V, Larsen N, Los T, Lykidis A, Selkov E Jr, Walunas TL, Purcell A, Edwards RA, Hawkins T, Haselkorn R, Overbeek R, Kyrpides NC, Predki PF., Genome Res. 12(10), 2002
PMID: 12368248
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.
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PMID: 12533478
A novel regulatory system required for pathogenicity of Xanthomonas campestris is mediated by a small diffusible signal molecule.
Barber CE, Tang JL, Feng JX, Pan MQ, Wilson TJ, Slater H, Dow JM, Williams P, Daniels MJ., Mol. Microbiol. 24(3), 1997
PMID: 9179849
Barber CE, Tang JL, Feng JX, Pan MQ, Wilson TJ, Slater H, Dow JM, Williams P, Daniels MJ., Mol. Microbiol. 24(3), 1997
PMID: 9179849
Expression of putative pathogenicity-related genes in Xylella fastidiosa grown at low and high cell density conditions in vitro.
Scarpari LM, Lambais MR, Silva DS, Carraro DM, Carrer H., FEMS Microbiol. Lett. 222(1), 2003
PMID: 12757950
Scarpari LM, Lambais MR, Silva DS, Carraro DM, Carrer H., FEMS Microbiol. Lett. 222(1), 2003
PMID: 12757950
Microarray analyses of Xylella fastidiosa provide evidence of coordinated transcription control of laterally transferred elements.
Nunes LR, Rosato YB, Muto NH, Yanai GM, da Silva VS, Leite DB, Goncalves ER, de Souza AA, Coletta-Filho HD, Machado MA, Lopes SA, de Oliveira RC., Genome Res. 13(4), 2003
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Analysis of gene expression in two growth states of Xylella fastidiosa and its relationship with pathogenicity.
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de Souza AA, Takita MA, Coletta-Filho HD, Caldana C, Goldman GH, Yanai GM, Muto NH, de Oliveira RC, Nunes LR, Machado MA., Mol. Plant Microbe Interact. 16(10), 2003
PMID: 14558688
Proteome analysis of the plant pathogen Xylella fastidiosa reveals major cellular and extracellular proteins and a peculiar codon bias distribution.
Smolka MB, Martins-de-Souza D, Martins D, Winck FV, Santoro CE, Castellari RR, Ferrari F, Brum IJ, Galembeck E, Della Coletta Filho H, Machado MA, Marangoni S, Novello JC., Proteomics 3(2), 2003
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PMID: 12601815
Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors.
Collmer A, Lindeberg M, Petnicki-Ocwieja T, Schneider DJ, Alfano JR., Trends Microbiol. 10(10), 2002
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Collmer A, Lindeberg M, Petnicki-Ocwieja T, Schneider DJ, Alfano JR., Trends Microbiol. 10(10), 2002
PMID: 12377556
Identifying type III effectors of plant pathogens and analyzing their interaction with plant cells.
Greenberg JT, Vinatzer BA., Curr. Opin. Microbiol. 6(1), 2003
PMID: 12615215
Greenberg JT, Vinatzer BA., Curr. Opin. Microbiol. 6(1), 2003
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PopP1, a new member of the YopJ/AvrRxv family of type III effector proteins, acts as a host-specificity factor and modulates aggressiveness of Ralstonia solanacearum.
Lavie M, Shillington E, Eguiluz C, Grimsley N, Boucher C., Mol. Plant Microbe Interact. 15(10), 2002
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Lavie M, Shillington E, Eguiluz C, Grimsley N, Boucher C., Mol. Plant Microbe Interact. 15(10), 2002
PMID: 12437304
Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus.
Deslandes L, Olivier J, Peeters N, Feng DX, Khounlotham M, Boucher C, Somssich I, Genin S, Marco Y., Proc. Natl. Acad. Sci. U.S.A. 100(13), 2003
PMID: 12788974
Deslandes L, Olivier J, Peeters N, Feng DX, Khounlotham M, Boucher C, Somssich I, Genin S, Marco Y., Proc. Natl. Acad. Sci. U.S.A. 100(13), 2003
PMID: 12788974
HrpXv, an AraC-type regulator, activates expression of five of the six loci in the hrp cluster of Xanthomonas campestris pv. vesicatoria.
Wengelnik K, Bonas U., J. Bacteriol. 178(12), 1996
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Wengelnik K, Bonas U., J. Bacteriol. 178(12), 1996
PMID: 8655542
Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana.
Boch J, Joardar V, Gao L, Robertson TL, Lim M, Kunkel BN., Mol. Microbiol. 44(1), 2002
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