Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses

Manthey K, Krajinski F, Hohnjec N, Firnhaber C, Pühler A, Perlick AM, Küster H (2004)
Mol Plant-Microbe Interact 17(10): 1063-1077.

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DOI
Autor*in
Manthey, KatjaUniBi; Krajinski, F; Hohnjec, N; Firnhaber, C; Pühler, AlfredUniBi ; Perlick, AM; Küster, Helge
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Fakultät für Biologie
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Abstract / Bemerkung
Transcriptome profiling based on cDNA array hybridizations and in silico screening was used to identify Medicago truncatula genes induced in both root nodules and arbuscular mycorrhiza (AM). By array hybridizations, we detected several hundred genes that were upregulated in the root nodule and the AM symbiosis, respectively, with a total of 75 genes being induced during both interactions. The second approach based on in silico data mining yielded several hundred additional candidate genes with a predicted symbiosis-enhanced expression. A subset of the genes identified by either expression profiling tool was subjected to quantitative real-time reverse-transcription polymerase chain reaction for a verification of their symbiosis-induced expression. That way, induction in root nodules and AM was confirmed for 26 genes, most of them being reported as symbiosis-induced for the first time. In addition to delivering a number of novel symbiosis-induced genes, our approach identified several genes that were induced in only one of the two root endosymbioses. The spatial expression patterns of two symbiosis-induced genes encoding an annexin and a beta-tubulin were characterized in transgenic roots using promoter-reporter gene fusions.
Erscheinungsjahr
2004
Zeitschriftentitel
Mol Plant-Microbe Interact
Band
17
Ausgabe
10
Seite(n)
1063-1077
ISSN
0894-0282
Page URI
https://pub.uni-bielefeld.de/record/1606475

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Manthey K, Krajinski F, Hohnjec N, et al. Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact. 2004;17(10):1063-1077.
Manthey, K., Krajinski, F., Hohnjec, N., Firnhaber, C., Pühler, A., Perlick, A. M., & Küster, H. (2004). Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact, 17(10), 1063-1077. https://doi.org/10.1094/MPMI.2004.17.10.1063
Manthey, Katja, Krajinski, F, Hohnjec, N, Firnhaber, C, Pühler, Alfred, Perlick, AM, and Küster, Helge. 2004. “Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses”. Mol Plant-Microbe Interact 17 (10): 1063-1077.
Manthey, K., Krajinski, F., Hohnjec, N., Firnhaber, C., Pühler, A., Perlick, A. M., and Küster, H. (2004). Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact 17, 1063-1077.
Manthey, K., et al., 2004. Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact, 17(10), p 1063-1077.
K. Manthey, et al., “Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses”, Mol Plant-Microbe Interact, vol. 17, 2004, pp. 1063-1077.
Manthey, K., Krajinski, F., Hohnjec, N., Firnhaber, C., Pühler, A., Perlick, A.M., Küster, H.: Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact. 17, 1063-1077 (2004).
Manthey, Katja, Krajinski, F, Hohnjec, N, Firnhaber, C, Pühler, Alfred, Perlick, AM, and Küster, Helge. “Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses”. Mol Plant-Microbe Interact 17.10 (2004): 1063-1077.

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