Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation

Chao T-C, Buhrmester J, Hansmeier N, Pühler A, Weidner S (2005)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 5969-5982.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ;
Erscheinungsjahr
Zeitschriftentitel
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Band
71
Ausgabe
10
Seite(n)
5969-5982
ISSN
PUB-ID

Zitieren

Chao T-C, Buhrmester J, Hansmeier N, Pühler A, Weidner S. Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2005;71(10):5969-5982.
Chao, T. - C., Buhrmester, J., Hansmeier, N., Pühler, A., & Weidner, S. (2005). Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(10), 5969-5982. doi:10.1128/AEM.71.10.5969-5982.2005
Chao, T. - C., Buhrmester, J., Hansmeier, N., Pühler, A., and Weidner, S. (2005). Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 5969-5982.
Chao, T.-C., et al., 2005. Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(10), p 5969-5982.
T.-C. Chao, et al., “Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 71, 2005, pp. 5969-5982.
Chao, T.-C., Buhrmester, J., Hansmeier, N., Pühler, A., Weidner, S.: Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 5969-5982 (2005).
Chao, Tzu-Chiao, Buhrmester, Jens, Hansmeier, Nicole, Pühler, Alfred, and Weidner, Stefan. “Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation”. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71.10 (2005): 5969-5982.

43 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Sinorhizobium fredii HH103 RirA Is Required for Oxidative Stress Resistance and Efficient Symbiosis with Soybean.
Crespo-Rivas JC, Navarro-Gómez P, Alias-Villegas C, Shi J, Zhen T, Niu Y, Cuéllar V, Moreno J, Cubo T, Vinardell JM, Ruiz-Sainz JE, Acosta-Jurado S, Soto MJ., Int J Mol Sci 20(3), 2019
PMID: 30759803
Tracking iron-associated proteomes in pathogens by a fluorescence approach.
Jiang N, Cheng T, Wang M, Chan GC, Jin L, Li H, Sun H., Metallomics 10(1), 2018
PMID: 29323384
Most Sinorhizobium meliloti Extracytoplasmic Function Sigma Factors Control Accessory Functions.
Lang C, Barnett MJ, Fisher RF, Smith LS, Diodati ME, Long SR., mSphere 3(5), 2018
PMID: 30305320
Sensing iron availability via the fragile [4Fe-4S] cluster of the bacterial transcriptional repressor RirA.
Pellicer Martinez MT, Martinez AB, Crack JC, Holmes JD, Svistunenko DA, Johnston AWB, Cheesman MR, Todd JD, Le Brun NE., Chem Sci 8(12), 2017
PMID: 29619193
HmuS and HmuQ of Ensifer/Sinorhizobium meliloti degrade heme in vitro and participate in heme metabolism in vivo.
Amarelle V, Rosconi F, Lázaro-Martínez JM, Buldain G, Noya F, O'Brian MR, Fabiano E., Biometals 29(2), 2016
PMID: 26906560
Fe-S proteins that regulate gene expression.
Mettert EL, Kiley PJ., Biochim Biophys Acta 1853(6), 2015
PMID: 25450978
Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.
Galardini M, Brilli M, Spini G, Rossi M, Roncaglia B, Bani A, Chiancianesi M, Moretto M, Engelen K, Bacci G, Pini F, Biondi EG, Bazzicalupo M, Mengoni A., PLoS Comput Biol 11(9), 2015
PMID: 26340565
Discrete Responses to Limitation for Iron and Manganese in Agrobacterium tumefaciens: Influence on Attachment and Biofilm Formation.
Heindl JE, Hibbing ME, Xu J, Natarajan R, Buechlein AM, Fuqua C., J Bacteriol 198(5), 2015
PMID: 26712936
Diversity in ABC transporters: type I, II and III importers.
Rice AJ, Park A, Pinkett HW., Crit Rev Biochem Mol Biol 49(5), 2014
PMID: 25155087
Two Sinorhizobium meliloti glutaredoxins regulate iron metabolism and symbiotic bacteroid differentiation.
Benyamina SM, Baldacci-Cresp F, Couturier J, Chibani K, Hopkins J, Bekki A, de Lajudie P, Rouhier N, Jacquot JP, Alloing G, Puppo A, Frendo P., Environ Microbiol 15(3), 2013
PMID: 22891731
Global gene expression changes in Candidatus Liberibacter asiaticus during the transmission in distinct hosts between plant and insect.
Yan Q, Sreedharan A, Wei S, Wang J, Pelz-Stelinski K, Folimonova S, Wang N., Mol Plant Pathol 14(4), 2013
PMID: 23336388
Global transcriptional response of Caulobacter crescentus to iron availability.
da Silva Neto JF, Lourenço RF, Marques MV., BMC Genomics 14(), 2013
PMID: 23941329
Quantitative proteomic analysis of the Hfq-regulon in Sinorhizobium meliloti 2011.
Sobrero P, Schlüter JP, Lanner U, Schlosser A, Becker A, Valverde C., PLoS One 7(10), 2012
PMID: 23119037
Iron homeostasis and management of oxidative stress response in bacteria.
Cornelis P, Wei Q, Andrews SC, Vinckx T., Metallomics 3(6), 2011
PMID: 21566833
A new small regulatory protein, HmuP, modulates haemin acquisition in Sinorhizobium meliloti.
Amarelle V, Koziol U, Rosconi F, Noya F, O'Brian MR, Fabiano E., Microbiology 156(pt 6), 2010
PMID: 20167620
Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming.
Nogales J, Domínguez-Ferreras A, Amaya-Gómez CV, van Dillewijn P, Cuéllar V, Sanjuán J, Olivares J, Soto MJ., BMC Genomics 11(), 2010
PMID: 20210991
Heme-responsive DNA binding by the global iron regulator Irr from Rhizobium leguminosarum.
Singleton C, White GF, Todd JD, Marritt SJ, Cheesman MR, Johnston AW, Le Brun NE., J Biol Chem 285(21), 2010
PMID: 20233710
A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.
Becker A, Barnett MJ, Capela D, Dondrup M, Kamp PB, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19103235
SMb20651 is another acyl carrier protein from Sinorhizobium meliloti.
Ramos-Vega AL, Dávila-Martínez Y, Sohlenkamp C, Contreras-Martínez S, Encarnación S, Geiger O, López-Lara IM., Microbiology 155(pt 1), 2009
PMID: 19118366
Roles of Agrobacterium tumefaciens RirA in iron regulation, oxidative stress response, and virulence.
Ngok-Ngam P, Ruangkiattikul N, Mahavihakanont A, Virgem SS, Sukchawalit R, Mongkolsuk S., J Bacteriol 191(7), 2009
PMID: 19168612
Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacterium Rhizobium and other alpha-proteobacteria.
Johnston AW, Todd JD, Curson AR, Lei S, Nikolaidou-Katsaridou N, Gelfand MS, Rodionov DA., Biometals 20(3-4), 2007
PMID: 17310401
Regulators of bacterial responses to nitric oxide.
Spiro S., FEMS Microbiol Rev 31(2), 2007
PMID: 17313521
Agrobacterium tumefaciens fur has important physiological roles in iron and manganese homeostasis, the oxidative stress response, and full virulence.
Kitphati W, Ngok-Ngam P, Suwanmaneerat S, Sukchawalit R, Mongkolsuk S., Appl Environ Microbiol 73(15), 2007
PMID: 17545320
Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.
Bender KS, Yen HC, Hemme CL, Yang Z, He Z, He Q, Zhou J, Huang KH, Alm EJ, Hazen TC, Arkin AP, Wall JD., Appl Environ Microbiol 73(17), 2007
PMID: 17630305
Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism.
Yang J, Sangwan I, Lindemann A, Hauser F, Hennecke H, Fischer HM, O'Brian MR., Mol Microbiol 60(2), 2006
PMID: 16573691
Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria.
Yuan ZC, Zaheer R, Morton R, Finan TM., Nucleic Acids Res 34(9), 2006
PMID: 16717279
Beyond the Fur paradigm: iron-controlled gene expression in rhizobia.
Rudolph G, Hennecke H, Fischer HM., FEMS Microbiol Rev 30(4), 2006
PMID: 16774589
An integrated approach to functional genomics: construction of a novel reporter gene fusion library for Sinorhizobium meliloti.
Cowie A, Cheng J, Sibley CD, Fong Y, Zaheer R, Patten CL, Morton RM, Golding GB, Finan TM., Appl Environ Microbiol 72(11), 2006
PMID: 16963549
The Bradyrhizobium japonicum Fur protein is an iron-responsive regulator in vivo.
Yang J, Sangwan I, O'brian MR., Mol Genet Genomics 276(6), 2006
PMID: 17039378
Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria.
Rodionov DA, Gelfand MS, Todd JD, Curson AR, Johnston AW., PLoS Comput Biol 2(12), 2006
PMID: 17173478

74 References

Daten bereitgestellt von Europe PubMed Central.

Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon.
Baichoo N, Wang T, Ye R, Helmann JD., Mol. Microbiol. 45(6), 2002
PMID: 12354229
Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, Kahn ML, Kalman S, Keating DH, Palm C, Peck MC, Surzycki R, Wells DH, Yeh KC, Davis RW, Federspiel NA, Long SR., Proc. Natl. Acad. Sci. U.S.A. 98(17), 2001
PMID: 11481432
Identification of an iron-regulated, hemin-binding outer membrane protein in Sinorhizobium meliloti.
Battistoni F, Platero R, Duran R, Cervenansky C, Battistoni J, Arias A, Fabiano E., Appl. Environ. Microbiol. 68(12), 2002
PMID: 12450806
Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor.
Beaumont HJ, Lens SI, Reijnders WN, Westerhoff HV, van Spanning RJ., Mol. Microbiol. 54(1), 2004
PMID: 15458412
Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions.
Becker A, Berges H, Krol E, Bruand C, Ruberg S, Capela D, Lauber E, Meilhoc E, Ampe F, de Bruijn FJ, Fourment J, Francez-Charlot A, Kahn D, Kuster H, Liebe C, Puhler A, Weidner S, Batut J., Mol. Plant Microbe Interact. 17(3), 2004
PMID: 15000396
R factor transfer in Rhizobium leguminosarum.
Beringer JE., J. Gen. Microbiol. 84(1), 1974
PMID: 4612098
Transport of iron across the outer membrane.
Braun V, Gunter K, Hantke K., Biol Met 4(1), 1991
PMID: 1854585
Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.
Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, Dreano S, Gloux S, Godrie T, Goffeau A, Kahn D, Kiss E, Lelaure V, Masuy D, Pohl T, Portetelle D, Puhler A, Purnelle B, Ramsperger U, Renard C, Thebault P, Vandenbol M, Weidner S, Galibert F., Proc. Natl. Acad. Sci. U.S.A. 98(17), 2001
PMID: 11481430

AUTHOR UNKNOWN, 1992
Siderophore and organic acid production in root nodule bacteria.
Carson KC, Holliday S, Glenn AR, Dilworth MJ., Arch. Microbiol. 157(3), 1992
PMID: 1387306
The Fur-like protein Mur of Rhizobium leguminosarum is a Mn(2+)-responsive transcriptional regulator.
Diaz-Mireles E, Wexler M, Sawers G, Bellini D, Todd JD, Johnston AW., Microbiology (Reading, Engl.) 150(Pt 5), 2004
PMID: 15133106
EMMA: a platform for consistent storage and efficient analysis of microarray data.
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651856
Opening the iron box: transcriptional metalloregulation by the Fur protein.
Escolar L, Perez-Martin J, de Lorenzo V., J. Bacteriol. 181(20), 1999
PMID: 10515908
The composite genome of the legume symbiont Sinorhizobium meliloti.
Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J., Science 293(5530), 2001
PMID: 11474104
Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants.
Grant SG, Jessee J, Bloom FR, Hanahan D., Proc. Natl. Acad. Sci. U.S.A. 87(12), 1990
PMID: 2162051
The bacterial irr protein is required for coordination of heme biosynthesis with iron availability.
Hamza I, Chauhan S, Hassett R, O'Brian MR., J. Biol. Chem. 273(34), 1998
PMID: 9705301
Iron and metal regulation in bacteria.
Hantke K., Curr. Opin. Microbiol. 4(2), 2001
PMID: 11282473
Cloning and characterization of the katA gene of Rhizobium meliloti encoding a hydrogen peroxide-inducible catalase.
Herouart D, Sigaud S, Moreau S, Frendo P, Touati D, Puppo A., J. Bacteriol. 178(23), 1996
PMID: 8955300
Expression of the bacterial catalase genes during Sinorhizobium meliloti-Medicago sativa symbiosis and their crucial role during the infection process.
Jamet A, Sigaud S, Van de Sype G, Puppo A, Herouart D., Mol. Plant Microbe Interact. 16(3), 2003
PMID: 12650453
Metals and the rhizobial-legume symbiosis--uptake, utilization and signalling.
Johnston AW, Yeoman KH, Wexler M., Adv. Microb. Physiol. 45(), 2001
PMID: 11450108
The Pasteurella haemolytica 35 kDa iron-regulated protein is an FbpA homologue.
Kirby SD, Lainson FA, Donachie W, Okabe A, Tokuda M, Hatase O, Schryvers AB., Microbiology (Reading, Engl.) 144 ( Pt 12)(), 1998
PMID: 9884235
Genetic organization of the region encoding regulation, biosynthesis, and transport of rhizobactin 1021, a siderophore produced by Sinorhizobium meliloti.
Lynch D, O'Brien J, Welch T, Clarke P, Cuiv PO, Crosa JH, O'Connell M., J. Bacteriol. 183(8), 2001
PMID: 11274118
SufC: an unorthodox cytoplasmic ABC/ATPase required for [Fe-S] biogenesis under oxidative stress.
Nachin L, Loiseau L, Expert D, Barras F., EMBO J. 22(3), 2003
PMID: 12554644
A Rhizobium leguminosarum mutant defective in symbiotic iron acquisition.
Nadler KD, Johnston AW, Chen JW, John TR., J. Bacteriol. 172(2), 1990
PMID: 2404949
Discovery of a haem uptake system in the soil bacterium Bradyrhizobium japonicum.
Nienaber A, Hennecke H, Fischer HM., Mol. Microbiol. 41(4), 2001
PMID: 11532144
Heme compounds as iron sources for nonpathogenic Rhizobium bacteria.
Noya F, Arias A, Fabiano E., J. Bacteriol. 179(9), 1997
PMID: 9139934
A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli.
Outten FW, Djaman O, Storz G., Mol. Microbiol. 52(3), 2004
PMID: 15101990
Transcriptome analysis of the Pseudomonas aeruginosa response to iron.
Palma M, Worgall S, Quadri LE., Arch. Microbiol. 180(5), 2003
PMID: 14513207
Iron acquisition and regulation in Campylobacter jejuni.
Palyada K, Threadgill D, Stintzi A., J. Bacteriol. 186(14), 2004
PMID: 15231804
Pasteurella multocida gene expression in response to iron limitation.
Paustian ML, May BJ, Kapur V., Infect. Immun. 69(6), 2001
PMID: 11349083

AUTHOR UNKNOWN, 1993
Fur is involved in manganese-dependent regulation of mntA (sitA) expression in Sinorhizobium meliloti.
Platero R, Peixoto L, O'Brian MR, Fabiano E., Appl. Environ. Microbiol. 70(7), 2004
PMID: 15240318
A new symbiotic cluster on the pSym megaplasmid of Rhizobium meliloti 2011 carries a functional fix gene repeat and a nod locus.
Renalier MH, Batut J, Ghai J, Terzaghi B, Gherardi M, David M, Garnerone AM, Vasse J, Truchet G, Huguet T., J. Bacteriol. 169(5), 1987
PMID: 3571166

AUTHOR UNKNOWN, 1980
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
PMID: 14651866

AUTHOR UNKNOWN, 1989
IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins.
Schwartz CJ, Giel JL, Patschkowski T, Luther C, Ruzicka FJ, Beinert H, Kiley PJ., Proc. Natl. Acad. Sci. U.S.A. 98(26), 2001
PMID: 11742080
Universal chemical assay for the detection and determination of siderophores.
Schwyn B, Neilands JB., Anal. Biochem. 160(1), 1987
PMID: 2952030
Crystal structure of Pasteurella haemolytica ferric ion-binding protein A reveals a novel class of bacterial iron-binding proteins.
Shouldice SR, Dougan DR, Williams PA, Skene RJ, Snell G, Scheibe D, Kirby S, Hosfield DJ, McRee DE, Schryvers AB, Tari LW., J. Biol. Chem. 278(42), 2003
PMID: 12882966

AUTHOR UNKNOWN, 1983

AUTHOR UNKNOWN, 1985
Mapping of 41 chemotaxis, flagellar and motility genes to a single region of the Sinorhizobium meliloti chromosome.
Sourjik V, Sterr W, Platzer J, Bos I, Haslbeck M, Schmitt R., Gene 223(1-2), 1998
PMID: 9858749
Root nodulation and infection factors produced by rhizobial bacteria.
Spaink HP., Annu. Rev. Microbiol. 54(), 2000
PMID: 11018130
Pleiotropic effects of a Yersinia pestis fur mutation.
Staggs TM, Fetherston JD, Perry RD., J. Bacteriol. 176(24), 1994
PMID: 8002585

AUTHOR UNKNOWN, 2001
RirA, an iron-responsive regulator in the symbiotic bacterium Rhizobium leguminosarum.
Todd JD, Wexler M, Sawers G, Yeoman KH, Poole PS, Johnston AW., Microbiology (Reading, Engl.) 148(Pt 12), 2002
PMID: 12480909

AUTHOR UNKNOWN, 1970
Starvation-Induced Changes in Motility, Chemotaxis, and Flagellation of Rhizobium meliloti
Wei X, Bauer WD., Appl. Environ. Microbiol. 64(5), 1998
PMID: 9572940
Fur is not the global regulator of iron uptake genes in Rhizobium leguminosarum.
Wexler M, Todd JD, Kolade O, Bellini D, Hemmings AM, Sawers G, Johnston AW., Microbiology (Reading, Engl.) 149(Pt 5), 2003
PMID: 12724397
The Rhizobium leguminosarum tonB gene is required for the uptake of siderophore and haem as sources of iron.
Wexler M, Yeoman KH, Stevens JB, de Luca NG, Sawers G, Johnston AW., Mol. Microbiol. 41(4), 2001
PMID: 11532145
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP., Nucleic Acids Res. 30(4), 2002
PMID: 11842121
Evidence that the Rhizobium regulatory protein RirA binds to cis-acting iron-responsive operators (IROs) at promoters of some Fe-regulated genes.
Yeoman KH, Curson AR, Todd JD, Sawers G, Johnston AW., Microbiology (Reading, Engl.) 150(Pt 12), 2004
PMID: 15583159

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 16204511
PubMed | Europe PMC

Suchen in

Google Scholar