Concepts and approaches towards understanding the cellular redox proteome

Stroeher E, Dietz K-J (2006)
PLANT BIOLOGY 8(4): 407-418.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
The physiological activity of a significant subset of cell proteins is modified by the redox state of regulatory thiols. The cellular redox homeostasis depends on the balance between oxidation of thiols through oxygen and reactive oxygen species and reduction by thiol-disulfide transfer reactions. Novel and improved methodology has been designed during recent years to address the level of thiol/disulfide regulation on a genomewide scale. The approaches are either based on gel electrophoresis or on chromatographic techniques coupled to high end mass spectrometry. The review addresses diagonal 2D-SDSPAGE, targeted identification of specific redox-interactions, affinity chromatography with thioredoxins and glutaredoxins, gel-based and non-gel based labelling techniques with fluorophores (such as Cy3, Cy5, ICy), radioisotopes, or with isotopecoded affinity tags (ICAT), differential gel electrophoresis (DIGE) and combined fractional diagonal chromatography (COFIRADIC). The extended methodological repertoire promises fast and new insight into the intricate regulation network of the redox proteome of animals, bacteria, and plants.
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PLANT BIOLOGY
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8
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4
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407-418
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Stroeher E, Dietz K-J. Concepts and approaches towards understanding the cellular redox proteome. PLANT BIOLOGY. 2006;8(4):407-418.
Stroeher, E., & Dietz, K. - J. (2006). Concepts and approaches towards understanding the cellular redox proteome. PLANT BIOLOGY, 8(4), 407-418. doi:10.1055/s-2006-923961
Stroeher, E., and Dietz, K. - J. (2006). Concepts and approaches towards understanding the cellular redox proteome. PLANT BIOLOGY 8, 407-418.
Stroeher, E., & Dietz, K.-J., 2006. Concepts and approaches towards understanding the cellular redox proteome. PLANT BIOLOGY, 8(4), p 407-418.
E. Stroeher and K.-J. Dietz, “Concepts and approaches towards understanding the cellular redox proteome”, PLANT BIOLOGY, vol. 8, 2006, pp. 407-418.
Stroeher, E., Dietz, K.-J.: Concepts and approaches towards understanding the cellular redox proteome. PLANT BIOLOGY. 8, 407-418 (2006).
Stroeher, E., and Dietz, Karl-Josef. “Concepts and approaches towards understanding the cellular redox proteome”. PLANT BIOLOGY 8.4 (2006): 407-418.

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PMID: 14673118
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PMID: 15352244
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AUTHOR UNKNOWN, 0
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PMID: 15595732
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Light-harvesting complex II binds to several small subunits of photosystem I.
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Disulfide-linked peptides in the chloroplast thylakoid membrane.
Anderson LE, Manabe K., Biochim. Biophys. Acta 579(1), 1979
PMID: 465521
Proteomics gives insight into the regulatory function of chloroplast thioredoxins.
Balmer Y, Koller A, del Val G, Manieri W, Schurmann P, Buchanan BB., Proc. Natl. Acad. Sci. U.S.A. 100(1), 2002
PMID: 12509500
Thioredoxin links redox to the regulation of fundamental processes of plant mitochondria.
Balmer Y, Vensel WH, Tanaka CK, Hurkman WJ, Gelhaye E, Rouhier N, Jacquot JP, Manieri W, Schurmann P, Droux M, Buchanan BB., Proc. Natl. Acad. Sci. U.S.A. 101(8), 2004
PMID: 14983062
Proteomics uncovers proteins interacting electrostatically with thioredoxin in chloroplasts.
Balmer Y, Koller A, Val GD, Schurmann P, Buchanan BB., Photosyn. Res. 79(3), 2004
PMID: 16328793
Direct identification of the primary nucleophile of thioredoxin f.
Brandes HK, Larimer FW, Geck MK, Stringer CD, Schurmann P, Hartman FC., J. Biol. Chem. 268(25), 1993
PMID: 8395501
Redox regulation: a broadening horizon.
Buchanan BB, Balmer Y., Annu Rev Plant Biol 56(), 2005
PMID: 15862094
Crystal structures of two functionally different thioredoxins in spinach chloroplasts.
Capitani G, Markovic-Housley Z, DelVal G, Morris M, Jansonius JN, Schurmann P., J. Mol. Biol. 302(1), 2000
PMID: 10964566
The Arabidopsis plastidial thioredoxins: new functions and new insights into specificity.
Collin V, Issakidis-Bourguet E, Marchand C, Hirasawa M, Lancelin JM, Knaff DB, Miginiac-Maslow M., J. Biol. Chem. 278(26), 2003
PMID: 12707279
Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type.
Collin V, Lamkemeyer P, Miginiac-Maslow M, Hirasawa M, Knaff DB, Dietz KJ, Issakidis-Bourguet E., Plant Physiol. 136(4), 2004
PMID: 15531707
Protein disulfide bond formation in the cytoplasm during oxidative stress.
Cumming RC, Andon NL, Haynes PA, Park M, Fischer WH, Schubert D., J. Biol. Chem. 279(21), 2004
PMID: 15031298
Thioredoxin treatment increases digestibility and lowers allergenicity of milk.
del Val G, Yee BC, Lozano RM, Buchanan BB, Ermel RW, Lee YM, Frick OL., J. Allergy Clin. Immunol. 103(4), 1999
PMID: 10200021
Plant peroxiredoxins.
Dietz KJ., Annu Rev Plant Biol 54(), 2003
PMID: 14502986

AUTHOR UNKNOWN, 0

Dietz, Progress in Botany 63(), 2002
The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress.
Finkemeier I, Goodman M, Lamkemeyer P, Kandlbinder A, Sweetlove LJ, Dietz KJ., J. Biol. Chem. 280(13), 2005
PMID: 15632145
A specific form of thioredoxin h occurs in plant mitochondria and regulates the alternative oxidase.
Gelhaye E, Rouhier N, Gerard J, Jolivet Y, Gualberto J, Navrot N, Ohlsson PI, Wingsle G, Hirasawa M, Knaff DB, Wang H, Dizengremel P, Meyer Y, Jacquot JP., Proc. Natl. Acad. Sci. U.S.A. 101(40), 2004
PMID: 15385674
The plant thioredoxin system.
Gelhaye E, Rouhier N, Navrot N, Jacquot JP., Cell. Mol. Life Sci. 62(1), 2005
PMID: 15619004
Reversible labeling of cysteine-containing peptides allows their specific chromatographic isolation for non-gel proteome studies.
Gevaert K, Ghesquiere B, Staes A, Martens L, Van Damme J, Thomas GR, Vandekerckhove J., Proteomics 4(4), 2004
PMID: 15048972
Heme-based sensors: defining characteristics, recent developments, and regulatory hypotheses.
Gilles-Gonzalez MA, Gonzalez G., J. Inorg. Biochem. 99(1), 2005
PMID: 15598487

Gobin, Plant Physiology and Biochemistry 35(), 1997
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags.
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R., Nat. Biotechnol. 17(10), 1999
PMID: 10504701
Peroxiredoxins.
Hofmann B, Hecht HJ, Flohe L., Biol. Chem. 383(3-4), 2002
PMID: 12033427
A tomato alternative oxidase protein with altered regulatory properties.
Holtzapffel RC, Castelli J, Finnegan PM, Millar AH, Whelan J, Day DA., Biochim. Biophys. Acta 1606(1-3), 2003
PMID: 14507436
Tansley Review No. 94. Thioredoxins: structure and function in plant cells.
Jacquot JP, Lancelin JM, Meyer Y., New Phytol. 136(4), 1997
PMID: IND20632792
Nearest-neighbor analysis of higher-plant photosystem I holocomplex.
Jansson S, Andersen B, Scheller HV., Plant Physiol. 112(1), 1996
PMID: 8819335
Crystal structure of thioltransferase at 2.2 A resolution.
Katti SK, Robbins AH, Yang Y, Wells WW., Protein Sci. 4(10), 1995
PMID: 8535236
Specific reduction of wheat storage proteins by thioredoxin h.
Kobrehel K, Wong JH, Balogh A, Kiss F, Yee BC, Buchanan BB., Plant Physiol. 99(3), 1992
PMID: 11538180

AUTHOR UNKNOWN, 0
The plant-specific function of 2-Cys peroxiredoxin-mediated detoxification of peroxides in the redox-hierarchy of photosynthetic electron flux.
Konig J, Baier M, Horling F, Kahmann U, Harris G, Schurmann P, Dietz KJ., Proc. Natl. Acad. Sci. U.S.A. 99(8), 2002
PMID: 11929977
Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli.
Kumar JK, Tabor S, Richardson CC., Proc. Natl. Acad. Sci. U.S.A. 101(11), 2004
PMID: 15004283
Reaction mechanism, evolutionary analysis, and role of zinc in Drosophila methionine-R-sulfoxide reductase.
Kumar RA, Koc A, Cerny RL, Gladyshev VN., J. Biol. Chem. 277(40), 2002
PMID: 12145281
Identification and characterization of a mitochondrial thioredoxin system in plants.
Laloi C, Rayapuram N, Chartier Y, Grienenberger JM, Bonnard G, Meyer Y., Proc. Natl. Acad. Sci. U.S.A. 98(24), 2001
PMID: 11717467
New thioredoxin targets in the unicellular photosynthetic eukaryote Chlamydomonas reinhardtii.
Lemaire SD, Guillon B, Le Marechal P, Keryer E, Miginiac-Maslow M, Decottignies P., Proc. Natl. Acad. Sci. U.S.A. 101(19), 2004
PMID: 15123830
Thioredoxin-linked processes in cyanobacteria are as numerous as in chloroplasts, but targets are different.
Lindahl M, Florencio FJ., Proc. Natl. Acad. Sci. U.S.A. 100(26), 2003
PMID: 14673118
New targets of Arabidopsis thioredoxins revealed by proteomic analysis.
Marchand C, Le Marechal P, Meyer Y, Miginiac-Maslow M, Issakidis-Bourguet E, Decottignies P., Proteomics 4(9), 2004
PMID: 15352244
The development of the DIGE system: 2D fluorescence difference gel analysis technology.
Marouga R, David S, Hawkins E., Anal Bioanal Chem 382(3), 2005
PMID: 15900442
Thioredoxin and germinating barley: targets and protein redox changes.
Marx C, Wong JH, Buchanan BB., Planta 216(3), 2002
PMID: 12520337
An electrophoretic method to detect cold-induced dissociation of proteins in crude extracts of higher plants.
Matsuo T, Graham D, Patterson BD, Hockley DB., Anal. Biochem. 223(2), 1994
PMID: 7887460

AUTHOR UNKNOWN, 0
The mammalian testis-specific thioredoxin system.
Miranda-Vizuete A, Sadek CM, Jimenez A, Krause WJ, Sutovsky P, Oko R., Antioxid. Redox Signal. 6(1), 2004
PMID: 14713334
Comprehensive survey of proteins targeted by chloroplast thioredoxin.
Motohashi K, Kondoh A, Stumpp MT, Hisabori T., Proc. Natl. Acad. Sci. U.S.A. 98(20), 2001
PMID: 11553771
A generic protein purification method for protein complex characterization and proteome exploration.
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B., Nat. Biotechnol. 17(10), 1999
PMID: 10504710
Plant glutaredoxins: still mysterious reducing systems.
Rouhier N, Gelhaye E, Jacquot JP., Cell. Mol. Life Sci. 61(11), 2004
PMID: 15170506
Identification of plant glutaredoxin targets.
Rouhier N, Villarejo A, Srivastava M, Gelhaye E, Keech O, Droux M, Finkemeier I, Samuelsson G, Dietz KJ, Jacquot JP, Wingsle G., Antioxid. Redox Signal. 7(7-8), 2005
PMID: 15998247
Malate valves to balance cellular energy supply.
Scheibe R., Physiol Plant 120(1), 2004
PMID: 15032873
Redox signaling in the chloroplast: the ferredoxin/thioredoxin system.
Schurmann P., Antioxid. Redox Signal. 5(1), 2003
PMID: 12626118
PLANT THIOREDOXIN SYSTEMS REVISITED.
Schurmann P, Jacquot JP., Annu. Rev. Plant Physiol. Plant Mol. Biol. 51(), 2000
PMID: 15012197
Isotope-coded affinity tag approach to identify and quantify oxidant-sensitive protein thiols.
Sethuraman M, McComb ME, Heibeck T, Costello CE, Cohen RA., Mol. Cell Proteomics 3(3), 2004
PMID: 14726493
Isotope-coded affinity tag (ICAT) approach to redox proteomics: identification and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures.
Sethuraman M, McComb ME, Huang H, Huang S, Heibeck T, Costello CE, Cohen RA., J. Proteome Res. 3(6), 2004
PMID: 15595732
PAS domains: internal sensors of oxygen, redox potential, and light.
Taylor BL, Zhulin IB., Microbiol. Mol. Biol. Rev. 63(2), 1999
PMID: 10357859
In vivo characterization of a thioredoxin h target protein defines a new peroxiredoxin family.
Verdoucq L, Vignols F, Jacquot JP, Chartier Y, Meyer Y., J. Biol. Chem. 274(28), 1999
PMID: 10391912
Accessibility of hepatocyte protein thiols to monobromobimane.
Weis M, Cotgreave IC, Moore GA, Norbeck K, Moldeus P., Biochim. Biophys. Acta 1176(1-2), 1993
PMID: 8452870
Unraveling thioredoxin-linked metabolic processes of cereal starchy endosperm using proteomics.
Wong JH, Balmer Y, Cai N, Tanaka CK, Vensel WH, Hurkman WJ, Buchanan BB., FEBS Lett. 547(1-3), 2003
PMID: 12860404
Thioredoxin reduction alters the solubility of proteins of wheat starchy endosperm: an early event in cereal germination.
Wong JH, Cai N, Tanaka CK, Vensel WH, Hurkman WJ, Buchanan BB., Plant Cell Physiol. 45(4), 2004
PMID: 15111715
Thioredoxin targets of developing wheat seeds identified by complementary proteomic approaches.
Wong JH, Cai N, Balmer Y, Tanaka CK, Vensel WH, Hurkman WJ, Buchanan BB., Phytochemistry 65(11), 2004
PMID: 15276458

AUTHOR UNKNOWN, 0
A strategy for the identification of proteins targeted by thioredoxin.
Yano H, Wong JH, Lee YM, Cho MJ, Buchanan BB., Proc. Natl. Acad. Sci. U.S.A. 98(8), 2001
PMID: 11274350
Redox changes accompanying the degradation of seed storage proteins in germinating rice.
Yano H, Wong JH, Cho MJ, Buchanan BB., Plant Cell Physiol. 42(8), 2001
PMID: 11522916
Light-harvesting complex II binds to several small subunits of photosystem I.
Zhang S, Scheller HV., J. Biol. Chem. 279(5), 2003
PMID: 14617624

AUTHOR UNKNOWN, 0

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