X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB

Niemann H, Petoukhov MV, Hartlein M, Moulin M, Gherardi E, Timmins P, Heinz DW, Svergun DI (2008)
JOURNAL OF MOLECULAR BIOLOGY 377(2): 489-500.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Niemann, HartmutUniBi ; Petoukhov, Maxim V.; Hartlein, Michael; Moulin, Martine; Gherardi, Ermanno; Timmins, Peter; Heinz, Dirk W.; Svergun, Dmitri I.
Abstract / Bemerkung
The Listeria monocytogenes surface protein InIB binds to the extracellular domain of the human receptor tyrosine kinase Met, the product of the c-met proto-oncogene. InlB binding activates the Met receptor, leading to uptake of Listeria into normally nonphagocytic host cells. The N-terminal half of InIB (InlB(321)) is sufficient for Met binding and activation. The complex between this Met-binding domain of InIB and various constructs of the Met ectodomain was characterized by size exclusion chromatography and dynamic light scattering, and structural models were built using small-angle X-ray scattering and small-angle neutron scattering. Although most receptor tyrosine kinase ligands induce receptor dimerization, InlB(321) consistently binds the Met ectodomain with a 1:1 stoichiometry. A construct comprising the Sema and PSI domains of Met, although sufficient to bind the physiological Met ligand hepatocyte growth factor/scatter factor, does not form a complex with InlB(321) in solution, highlighting the importance of Met Ig domains for InIB binding. Small-angle X-ray scattering and small-angle neutron scattering measurements of ligand and receptor, both free and in complex, reveal an elongated shape for the receptor. The four Ig domains form a bent, rather than a fully extended, conformation, and InlB(321) binds to Sema and the first Ig domain of Met, in agreement with the recent crystal structure of a smaller Met fragment in complex with InlB(321), These results call into question whether receptor dimerization is the basic underlying event in InlB(321)-mediated Met activation and demonstrate differences in the mechanisms by which the physiological ligand hepatocyte growth factor/scatter factor and InlB(321) bind and activate the Met receptor. (C) 2008 Elsevier Ltd. All rights reserved.
Stichworte
complex formation; neutron scattering; receptor; tyrosine kinase; small-angle scattering; rigid-body modeling
Erscheinungsjahr
2008
Zeitschriftentitel
JOURNAL OF MOLECULAR BIOLOGY
Band
377
Ausgabe
2
Seite(n)
489-500
ISSN
0022-2836
Page URI
https://pub.uni-bielefeld.de/record/1592014

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Niemann H, Petoukhov MV, Hartlein M, et al. X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB. JOURNAL OF MOLECULAR BIOLOGY. 2008;377(2):489-500.
Niemann, H., Petoukhov, M. V., Hartlein, M., Moulin, M., Gherardi, E., Timmins, P., Heinz, D. W., et al. (2008). X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB. JOURNAL OF MOLECULAR BIOLOGY, 377(2), 489-500. https://doi.org/10.1016/j.jmb.2008.01.027
Niemann, Hartmut, Petoukhov, Maxim V., Hartlein, Michael, Moulin, Martine, Gherardi, Ermanno, Timmins, Peter, Heinz, Dirk W., and Svergun, Dmitri I. 2008. “X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB”. JOURNAL OF MOLECULAR BIOLOGY 377 (2): 489-500.
Niemann, H., Petoukhov, M. V., Hartlein, M., Moulin, M., Gherardi, E., Timmins, P., Heinz, D. W., and Svergun, D. I. (2008). X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB. JOURNAL OF MOLECULAR BIOLOGY 377, 489-500.
Niemann, H., et al., 2008. X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB. JOURNAL OF MOLECULAR BIOLOGY, 377(2), p 489-500.
H. Niemann, et al., “X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB”, JOURNAL OF MOLECULAR BIOLOGY, vol. 377, 2008, pp. 489-500.
Niemann, H., Petoukhov, M.V., Hartlein, M., Moulin, M., Gherardi, E., Timmins, P., Heinz, D.W., Svergun, D.I.: X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB. JOURNAL OF MOLECULAR BIOLOGY. 377, 489-500 (2008).
Niemann, Hartmut, Petoukhov, Maxim V., Hartlein, Michael, Moulin, Martine, Gherardi, Ermanno, Timmins, Peter, Heinz, Dirk W., and Svergun, Dmitri I. “X-ray and neutron small-angle scattering analysis of the complex formed by the met receptor and the Listeria monocytogenes invasion protein InlB”. JOURNAL OF MOLECULAR BIOLOGY 377.2 (2008): 489-500.

21 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Matchout deuterium labelling of proteins for small-angle neutron scattering studies using prokaryotic and eukaryotic expression systems and high cell-density cultures.
Dunne O, Weidenhaupt M, Callow P, Martel A, Moulin M, Perkins SJ, Haertlein M, Forsyth VT., Eur Biophys J 46(5), 2017
PMID: 27844110
Crystal structure of an engineered YopM-InlB hybrid protein.
Breitsprecher D, Gherardi E, Bleymüller WM, Niemann HH., BMC Struct Biol 14(), 2014
PMID: 24669959
Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution.
Blanchet CE, Svergun DI., Annu Rev Phys Chem 64(), 2013
PMID: 23216378
Single-molecule photobleaching reveals increased MET receptor dimerization upon ligand binding in intact cells.
Dietz MS, Haße D, Ferraris DM, Göhler A, Niemann HH, Heilemann M., BMC Biophys 6(1), 2013
PMID: 23731667
Small angle neutron scattering for the study of solubilised membrane proteins.
Breyton C, Gabel F, Lethier M, Flayhan A, Durand G, Jault JM, Juillan-Binard C, Imbert L, Moulin M, Ravaud S, Härtlein M, Ebel C., Eur Phys J E Soft Matter 36(7), 2013
PMID: 23852580
New developments in the ATSAS program package for small-angle scattering data analysis.
Petoukhov MV, Franke D, Shkumatov AV, Tria G, Kikhney AG, Gajda M, Gorba C, Mertens HD, Konarev PV, Svergun DI., J Appl Crystallogr 45(pt 2), 2012
PMID: 25484842
A method for integrative structure determination of protein-protein complexes.
Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, Cheng Y, Sali A., Bioinformatics 28(24), 2012
PMID: 23093611
Fold and function of the InlB B-repeat.
Ebbes M, Bleymüller WM, Cernescu M, Nölker R, Brutschy B, Niemann HH., J Biol Chem 286(17), 2011
PMID: 21345802
Ligand-mediated dimerization of the Met receptor tyrosine kinase by the bacterial invasion protein InlB.
Ferraris DM, Gherardi E, Di Y, Heinz DW, Niemann HH., J Mol Biol 395(3), 2010
PMID: 19900460
A tandem repeat of a fragment of Listeria monocytogenes internalin B protein induces cell survival and proliferation.
Mungunsukh O, Lee YH, Marquez AP, Cecchi F, Bottaro DP, Day RM., Am J Physiol Lung Cell Mol Physiol 299(6), 2010
PMID: 20889677
Met receptor tyrosine kinase degradation is altered in response to the leucine-rich repeat of the Listeria invasion protein internalin B.
Gao X, Lorinczi M, Hill KS, Brooks NC, Dokainish H, Ireton K, Elferink LA., J Biol Chem 284(2), 2009
PMID: 18990695
Decorin is a novel antagonistic ligand of the Met receptor.
Goldoni S, Humphries A, Nyström A, Sattar S, Owens RT, McQuillan DJ, Ireton K, Iozzo RV., J Cell Biol 185(4), 2009
PMID: 19433454
Double superhelix model of high density lipoprotein.
Wu Z, Gogonea V, Lee X, Wagner MA, Li XM, Huang Y, Undurti A, May RP, Haertlein M, Moulin M, Gutsche I, Zaccai G, Didonato JA, Hazen SL., J Biol Chem 284(52), 2009
PMID: 19812036
Biomolecular pleiomorphism probed by spatial interpolation of coarse models.
Rusu M, Birmanns S, Wriggers W., Bioinformatics 24(21), 2008
PMID: 18757874

49 References

Daten bereitgestellt von Europe PubMed Central.

The epidemiology of human listeriosis.
Swaminathan B, Gerner-Smidt P., Microbes Infect. 9(10), 2007
PMID: 17720602
Listeria monocytogenes: a multifaceted model.
Hamon M, Bierne H, Cossart P., Nat. Rev. Microbiol. 4(6), 2006
PMID: 16710323
Entry of Listeria monocytogenes into hepatocytes requires expression of inIB, a surface protein of the internalin multigene family.
Dramsi S, Biswas I, Maguin E, Braun L, Mastroeni P, Cossart P., Mol. Microbiol. 16(2), 1995
PMID: 7565087
InIB-dependent internalization of Listeria is mediated by the Met receptor tyrosine kinase.
Shen Y, Naujokas M, Park M, Ireton K., Cell 103(3), 2000
PMID: 11081636
Met, metastasis, motility and more.
Birchmeier C, Birchmeier W, Gherardi E, Vande Woude GF., Nat. Rev. Mol. Cell Biol. 4(12), 2003
PMID: 14685170
Role of the hepatocyte growth factor receptor, c-Met, in oncogenesis and potential for therapeutic inhibition.
Maulik G, Shrikhande A, Kijima T, Ma PC, Morrison PT, Salgia R., Cytokine Growth Factor Rev. 13(1), 2002
PMID: 11750879
GW domains of the Listeria monocytogenes invasion protein InlB are required for potentiation of Met activation.
Banerjee M, Copp J, Vuga D, Marino M, Chapman T, van der Geer P, Ghosh P., Mol. Microbiol. 52(1), 2004
PMID: 15049825
Structure of the human receptor tyrosine kinase met in complex with the Listeria invasion protein InlB.
Niemann HH, Jager V, Butler PJ, van den Heuvel J, Schmidt S, Ferraris D, Gherardi E, Heinz DW., Cell 130(2), 2007
PMID: 17662939
Internalins from the human pathogen Listeria monocytogenes combine three distinct folds into a contiguous internalin domain.
Schubert WD, Gobel G, Diepholz M, Darji A, Kloer D, Hain T, Chakraborty T, Wehland J, Domann E, Heinz DW., J. Mol. Biol. 312(4), 2001
PMID: 11575932
GW domains of the Listeria monocytogenes invasion protein InlB are SH3-like and mediate binding to host ligands.
Marino M, Banerjee M, Jonquieres R, Cossart P, Ghosh P., EMBO J. 21(21), 2002
PMID: 12411480
Aromatic amino acids at the surface of InlB are essential for host cell invasion by Listeria monocytogenes.
Machner MP, Frese S, Schubert WD, Orian-Rousseau V, Gherardi E, Wehland J, Niemann HH, Heinz DW., Mol. Microbiol. 48(6), 2003
PMID: 12791136
Functional map and domain structure of MET, the product of the c-met protooncogene and receptor for hepatocyte growth factor/scatter factor.
Gherardi E, Youles ME, Miguel RN, Blundell TL, Iamele L, Gough J, Bandyopadhyay A, Hartmann G, Butler PJ., Proc. Natl. Acad. Sci. U.S.A. 100(21), 2003
PMID: 14528000
Crystal structure of the HGF beta-chain in complex with the Sema domain of the Met receptor.
Stamos J, Lazarus RA, Yao X, Kirchhofer D, Wiesmann C., EMBO J. 23(12), 2004
PMID: 15167892

Feigin, 1987
Small-angle scattering studies of biological macromolecules in solution
Svergun DI, Koch MHJ., Rep Prog Phys 66(10), 2003
PMID: c7061
Solution structure of the chicken skeletal muscle troponin complex via small-angle neutron and X-ray scattering.
King WA, Stone DB, Timmins PA, Narayanan T, von Brasch AA, Mendelson RA, Curmi PM., J. Mol. Biol. 345(4), 2005
PMID: 15588827
A map of protein-rRNA distribution in the 70 S Escherichia coli ribosome.
Svergun DI, Nierhaus KH., J. Biol. Chem. 275(19), 2000
PMID: 10799526
Structural basis of hepatocyte growth factor/scatter factor and MET signalling.
Gherardi E, Sandin S, Petoukhov MV, Finch J, Youles ME, Ofverstedt LG, Miguel RN, Blundell TL, Vande Woude GF, Skoglund U, Svergun DI., Proc. Natl. Acad. Sci. U.S.A. 103(11), 2006
PMID: 16537482
PRIMUS: a Windows PC-based system for small-angle scattering data analysis
Konarev PV, Volkov VV, Sokolova AV, Koch MHJ, Svergun DI., J Appl Crystallogr 36(), 2003
PMID: c7019
Uniqueness of ab initio shape determination in small-angle scattering
Volkov VV, Svergun DI., J Appl Crystallogr 36(), 2003
PMID: c7023
Cell signaling by receptor tyrosine kinases.
Schlessinger J., Cell 103(2), 2000
PMID: 11057895
Targeting the tumor and its microenvironment by a dual-function decoy Met receptor.
Michieli P, Mazzone M, Basilico C, Cavassa S, Sottile A, Naldini L, Comoglio PM., Cancer Cell 6(1), 2004
PMID: 15261142
Quaternary structure built from subunits combining NMR and small-angle x-ray scattering data.
Mattinen ML, Paakkonen K, Ikonen T, Craven J, Drakenberg T, Serimaa R, Waltho J, Annila A., Biophys. J. 83(2), 2002
PMID: 12124297
ATSAS 2.1, a program package for small-angle scattering data analysis
Konarev PV, Petoukhov MV, Volkov VV, Svergun DI., J Appl Crystallogr 39(), 2006
PMID: c7016
Structural stability and dynamics of hydrogenated and perdeuterated cytochrome P450cam (CYP101).
Meilleur F, Contzen J, Myles DA, Jung C., Biochemistry 43(27), 2004
PMID: 15236583
A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
Artero JB, Hartlein M, McSweeney S, Timmins P., Acta Crystallogr. D Biol. Crystallogr. 61(Pt 11), 2005
PMID: 16239733
Data acquisition systems for linear and area X-ray detectors using delay line readout
Boulin, Nucl. Instrum. Methods Phys. Res. Sect. A 269(), 1988
X-ray diffraction and scattering on disordered systems using synchrotron radiation
Koch, Nucl. Instrum. Methods 208(), 1983
The localization method used at EMBL
Gabriel, Nucl. Instrum. Methods 201(), 1982
A direct indirect method of small-angle scattering data treatment
Svergun, J. Appl. Crystallogr. 26(), 1993
La diffraction des rayons X aux tres petits angles; application a l'etude de phenomenes ultramicroscopiques
Guinier, Ann. Phys. (Paris) 12(), 1939
General theory
Porod, 1982
A computing guide for small angle scattering
Ghosh, 2006
Crystal structure of human prostatic acid phosphatase .
Jakob CG, Lewinski K, Kuciel R, Ostrowski W, Lebioda L., Prostate 42(3), 2000
PMID: 10639192
Protein hydration in solution: experimental observation by x-ray and neutron scattering.
Svergun DI, Richard S, Koch MH, Sayers Z, Kuprin S, Zaccai G., Proc. Natl. Acad. Sci. U.S.A. 95(5), 1998
PMID: 9482874
Analytical treatment of the resolution function for small-angle scattering
Pedersen, J. Appl. Crystallogr. 23(), 1990
Automated matching of high- and low-resolution structural models
Kozin MB, Svergun DI., J Appl Crystallogr 34(`), 2001
PMID: c7026
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