An overview of the wcd EST clustering tool

Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R (2008)
BIOINFORMATICS 24(13): 1542-1546.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Abstract / Bemerkung
The wcd system is an open source tool for clustering expressed sequence tags (EST) and other DNA and RNA sequences. wcd allows efficient all-versus-all comparison of ESTs using either the d(2) distance function or edit distance, improving existing implementations of d(2). It supports merging, refinement and reclustering of clusters. It is drop in compatible with the StackPack clustering package. wcd supports parallelization under both shared memory and cluster architectures. It is distributed with an EMBOSS wrapper allowing wcd to be installed as part of an EMBOSS installation (and so provided by a web server).


Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R. An overview of the wcd EST clustering tool. BIOINFORMATICS. 2008;24(13):1542-1546.
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., & Starfield, R. (2008). An overview of the wcd EST clustering tool. BIOINFORMATICS, 24(13), 1542-1546. doi:10.1093/bioinformatics/btn203
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., and Starfield, R. (2008). An overview of the wcd EST clustering tool. BIOINFORMATICS 24, 1542-1546.
Hazelhurst, S., et al., 2008. An overview of the wcd EST clustering tool. BIOINFORMATICS, 24(13), p 1542-1546.
S. Hazelhurst, et al., “An overview of the wcd EST clustering tool”, BIOINFORMATICS, vol. 24, 2008, pp. 1542-1546.
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., Starfield, R.: An overview of the wcd EST clustering tool. BIOINFORMATICS. 24, 1542-1546 (2008).
Hazelhurst, Scott, Hide, Winston, Lipták, Zsuzsanna, Nogueira, Ramon, and Starfield, Richard. “An overview of the wcd EST clustering tool”. BIOINFORMATICS 24.13 (2008): 1542-1546.

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