Authors
Chauve, Cedric
;
Diekmann, Yoan
;
Heber, Steffen
;
Mixtacki, Julia
;
Rahmann, Sven
;
Stoye, JensUniBi
Department
Centrum für Biotechnologie
Institut für Bioinformatik
Research Group J. Stoye
Technische Fakultät
AG Genominformatik
Abstract:
The information that groups of genes co-occur in several genomes provides a basis for further comparative genomic analysis. The task of finding such constellations, mostly referred to as gene clusters, has led to various models of increasing generality. A central feature to enhance the biological relevance of their definition when applied to real genomic data is to allow for slight differences in the gene content within a cluster, thus not only considering groups of exact equality. We contribute a model defining gene clusters as common intervals with errors and discuss different representations and the corresponding problems resulting for the search procedure.
Chauve C, Diekmann Y, Heber S, Mixtacki J, Rahmann S, Stoye J. On Common Intervals with Errors. Forschungsberichte. Bielefeld: Technische Fakultät der Universität Bielefeld; 2006.
Chauve, C., Diekmann, Y., Heber, S., Mixtacki, J., Rahmann, S., & Stoye, J. (2006). On Common Intervals with Errors (Forschungsberichte) . Bielefeld: Technische Fakultät der Universität Bielefeld.
Chauve, C., Diekmann, Y., Heber, S., Mixtacki, J., Rahmann, S., and Stoye, J. (2006). On Common Intervals with Errors. Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld.
Chauve, C., et al., 2006. On Common Intervals with Errors, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld.
C. Chauve, et al., On Common Intervals with Errors, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2006.
Chauve, C., Diekmann, Y., Heber, S., Mixtacki, J., Rahmann, S., Stoye, J.: On Common Intervals with Errors. Forschungsberichte. Technische Fakultät der Universität Bielefeld, Bielefeld (2006).
Chauve, Cedric, Diekmann, Yoan, Heber, Steffen, Mixtacki, Julia, Rahmann, Sven, and Stoye, Jens. On Common Intervals with Errors. Bielefeld: Technische Fakultät der Universität Bielefeld, 2006. Forschungsberichte.
@misc{1970464,
abstract = {The information that groups of genes co-occur in several genomes provides a basis for further comparative genomic analysis. The task of finding such constellations, mostly referred to as gene clusters, has led to various models of increasing generality. A central feature to enhance the biological relevance of their definition when applied to real genomic data is to allow for slight differences in the gene content within a cluster, thus not only considering groups of exact equality. We contribute a model defining gene clusters as common intervals with errors and discuss different representations and the corresponding problems resulting for the search procedure.},
author = {Chauve, Cedric and Diekmann, Yoan and Heber, Steffen and Mixtacki, Julia and Rahmann, Sven and Stoye, Jens},
language = {English},
publisher = {Technische Fakult{\"a}t der Universit{\"a}t Bielefeld},
series = {Forschungsberichte},
title = {On Common Intervals with Errors},
year = {2006},
}
TY - GEN
ID - 1970464
TI - On Common Intervals with Errors
T2 - Forschungsberichte
AU - Chauve, Cedric
AU - Diekmann, Yoan
AU - Heber, Steffen
AU - Mixtacki, Julia
AU - Rahmann, Sven
AU - Stoye, Jens
PY - 2006
AB - The information that groups of genes co-occur in several genomes provides a basis for further comparative genomic analysis. The task of finding such constellations, mostly referred to as gene clusters, has led to various models of increasing generality. A central feature to enhance the biological relevance of their definition when applied to real genomic data is to allow for slight differences in the gene content within a cluster, thus not only considering groups of exact equality. We contribute a model defining gene clusters as common intervals with errors and discuss different representations and the corresponding problems resulting for the search procedure.
PB - Technische Fakultät der Universität Bielefeld
U3 - PUB:ID 1970464
UR - http://nbn-resolving.de/urn:nbn:de:hbz:361-11418
ER -
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