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22 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., Chauve, C.: The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, R.: Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Huber, K. and Gusfield, D. (eds.) Proceedings of WABI 2019. LIPIcs. 143, Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Dagstuhl, Germany (2019).
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2019 | Preprint | PUB-ID: 2935604 OA
Wittler, R.: Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. (2019).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley, G., Wittler, R., Stoye, J., Hach, F.: Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY. 25, 825-836 (2018).
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, N., Chauve, C., Stoye, J., Wittler, R.: Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 15, 2094-2100 (2018).
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., Stoye, J.: Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. (2017).
PUB | arXiv
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., Stoye, J.: Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. Proceedings of CPM 2017. LIPIcs. 78, p. 19:1-19:9. (2017).
PUB | DOI
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, G., Wittler, R., Stoye, J., Hach, F.: Dynamic Alignment-Free and Reference-Free Read Compression. Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. 10229, p. 50-65. (2017).
PUB | DOI
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
Holley, G., Wittler, R., Stoye, J.: Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 11, : 3 (2016).
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., Chauve, C.: The SCJ small parsimony problem for weighted gene adjacencies. Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. 9683, p. 200-210. Springer International Publishing (2016).
PUB | DOI | Download (ext.) | arXiv
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, G., Wittler, R., Stoye, J.: Bloom Filter Trie - a data structure for pan-genome storage. In: Pop, M. and Touzet, H. (eds.) Algorithms in Bioinformatics. WABI 2015. Proceedings. Lecture Notes in Computer Science . 9289, p. 217-230. Springer (2015).
PUB | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Wittler, R., Marschall, T., Schönhuth, A., Makinen, V.: Repeat- and error-aware comparison of deletions. Bioinformatics. 31, 2947-2954 (2015).
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
Luhmann, N., Chauve, C., Stoye, J., Wittler, R.: Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In: Sérgio, C. (ed.) Proc. of BSB 2014. LNBI. 8826, p. 135-143. Springer Verlag (2014).
PUB | DOI
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., Wittler, R.: The Potential of Family-Free Genome Comparison. In: Chauve, C., El-Mabrouk, N., and Tannier, E. (eds.) Models and Algorithms for Genome Evolution. Computational Biology Series. 19, p. 287-307. Springer Verlag (2013).
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092 OA
Wittler, R.: Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 14, S12 (2013).
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
Manuch, J., Patterson, M., Wittler, R., Chauve, C., Tannier, E.: Linearization of ancestral multichromosomal genomes. BMC Bioinformatics. 13, (2012).
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
Wittler, R., Chauve, C.: Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics. 12, S21 (2011).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613
Chauve, C., Maňuch, J., Patterson, M., Wittler, R.: Tractability results for the Consecutive-Ones Property with multiplicity. Proceedings of CPM 2011. 6661, p. 90-103. (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787
Wittler, R., Maňuch, J., Patterson, M., Stoye, J.: Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology. 18, 1023-1039 (2011).
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2010 | Bielefelder E-Dissertation | PUB-ID: 2301939 OA
Wittler, R.: Phylogeny-based analysis of gene clusters. Bielefeld University, Bielefeld (Germany) (2010).
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