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82 Publikationen

2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, Goesmann A, Sczyrba A, Kalinowski J, Bräutigam A, Kruse O (2021)
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia.
Scientific Reports 11(1): 1726.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597 OA
Maus I, Tubbesing TJ, Wibberg D, Heyer R, Hassa J, Tomazetto G, Huang L, Bunk B, Spröer C, Benndorf D, Zverlov V, Pühler A, Klocke M, Sczyrba A, Schlüter A (2020)
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses.
Microorganisms 8(12): 2024.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948401 OA
Moore M, Wesemann C, Gossmann N, Sahm A, Krüger J, Sczyrba A, Dietz K-J (2020)
ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom.
BMC Bioinformatics 21(1): 490.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, Rademacher A, Pühler A, Sczyrba A, Schlüter A (2020)
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics.
Environmental Microbiome 15(1): 7.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226 OA
Rettenmaier R, Schneider M, Munk B, Lebuhn M, Jünemann S, Sczyrba A, Maus I, Zverlov V, Liebl W (2020)
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum.
Microorganisms 8(6): 915.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941704
Lesker TR, Durairaj AC, Galvez EJC, Lagkouvardos I, Baines JF, Clavel T, Sczyrba A, McHardy AC, Strowig T (2020)
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.
Cell reports 30(9): 2909-2922.e6.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
Fritz A, Hofmann P, Majda S, Dahms E, Dröge J, Fiedler J, Lesker TR, Belmann P, DeMaere MZ, Darling AE, Sczyrba A, Bremges A, McHardy AC (2019)
CAMISIM: simulating metagenomes and microbial communities.
Microbiome 7(1): 17.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
Belmann P, Fischer B, Krüger J, Procházka M, Rasche H, Prinz M, Hanussek M, Lang M, Bartusch F, Gläßle B, Krüger J, Pühler A, Sczyrba A (2019)
de.NBI Cloud federation through ELIXIR AAI.
F1000Research 8: 842.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
Pankoke H, Maus I, Loh G, Huser A, Seifert J, Tilker A, Hark S, Sczyrba A, Pelzer S, Kleinbolting J (2019)
Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.
FEMS microbiology letters.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A (2019)
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes.
Genes 10(6): 424.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts.
GigaScience 7(7): giy075.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC (2018)
AMBER: Assessment of Metagenome BinnERs.
GigaScience 7(6): giy069.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, Klocke M (2018)
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors.
Biotechnology for Biofuels 11(1): 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Linden M, Prochazka M, Lappalainen I, Bucik D, Vyskocil P, Kuba M, Silén S, Belmann P, Sczyrba A, Newhouse S, Matyska L, Nyrönen T (2018)
Common ELIXIR Service for Researcher Authentication and Authorisation.
F1000Research 7: 1199.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang L, Krüger J, Sczyrba A (2018)
Analyzing large scale genomic data on the cloud with Sparkhit.
Bioinformatics 34(9): 1457-1465.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.
Microbial Biotechnology 11(4): 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, Weigert Galvão C, Guimarães VF, Sczyrba A, Wendisch VF, Passaglia L (2018)
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach.
Plant and Soil 422(1-2): 467-478.
PUB | DOI | WoS
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Fleming EJ, Woyke T, Donatello AR, Kuypers MMM, Sczyrba A, Littmann S, Emerson D (2018)
Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea.
Applied and Environmental Microbiology 84(9): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu Y-W, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin H-H, Liao Y-C, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk H-P, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC (2017)
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software.
Nature Methods 14(11): 1063-1071.
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2017 | Zeitschriftenaufsatz | PUB-ID: 2913876
Sczyrba A, Hofman P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi} R, Nagarajan} N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang} D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu Y-W, Singer SW, Jain} C, Strous M, Klingenberg H, Meinicke P, Barton M, Lingner T, Lin} H-H, Liao} Y-C, Gueiros Z. Silva G, Cuevas DA, Edwards RA, Saha S, C. Piro V, Renard BY, Pop M, Klenk H-P, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC (2017)
Benchmark data sets, software results and reference data for the first CAMI challenge.
GigaScience Database.
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