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433 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938754
Zhu, L.; Hofestädt, R.; Ester, M. (2019): Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields IEEE-ACM Transactions on Computational Biology and Bioinformatics,16:(5): 1471-1482.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda, A.; Feng, T.; Sheehan, H.; Walker‐Hale, N.; Pucker, B.; Lopez‐Nieves, S.; Guo, R.; Brockington, S. (2019): The evolution of betalain biosynthesis in Caryophyllales New Phytologist
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
Schaffert, L.; März, C.; Burkhardt, L.; Droste, J.; Brandt, D.; Busche, T.; Rosen, W.; Schneiker-Bekel, S.; Persicke, M.; Pühler, A.; Kalinowski, J. (2019): Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110 Microbial Cell Factories,18:114
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839 OA
Nelkner, J.; Tejerizo, G. T.; Hassa, J.; Lin, T. W.; Witte, J.; Verwaaijen, B.; Winkler, A.; Bunk, B.; Spröer, C.; Overmann, J.; Grosch, R.; Pühler, A.; Schlüter, A. (2019): Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics Genes,10:(8):601
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2939037
Li, Q.; Rückert, C.; Li, G.; Huang, P.; Schneider, O.; Kalinowski, J.; Jiang, Y.; Zotchev, S. B.; Jiang, C. (2019): Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil. International journal of systematic and evolutionary microbiology
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2019 | Preprint | Veröffentlicht | PUB-ID: 2933775
Perozeni, F.; Cazzaniga, S.; Baier, T.; Zanoni, F.; Zoccatelli, G.; Lauersen, K. J.; Wobbe, L.; Ballottari, M. (2019): Turning a green alga red. Engineering astaxanthin biosynthesis by intragenic pseudogene revival in Chlamydomonas reinhardtii.: Supplementary information bioRxiv
PUB | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935875 OA
Anoman, A. D.; Flores-Tornero, M.; Benstein, R. M.; Blau, S.; Rosa-Tellez, S.; Bräutigam, A.; Fernie, A. R.; Munoz-Bertomeu, J.; Schilasky, S.; Meyer, A. J.; Kopriva, S.; Segura, J.; Krueger, S.; Ros, R. (2019): Deficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation PLANT PHYSIOLOGY,180:(1): 153-170.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
Rebets, Y.; Nadmid, S.; Paulus, C.; Dahlem, C.; Herrmann, J.; Huebner, H.; Rückert, C.; Kiemer, A. K.; Gmeiner, P.; Kalinowski, J.; Mueller, R.; Luzhetskyy, A. (2019): Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis Angewandte Chemie International Edition,58:(37): 12930-12934.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, S.; Baumann, P. T.; Rückert, C.; Nebel, B. A.; Siebert, D.; Schwentner, A.; Eikmanns, B. J.; Hauer, B.; Kalinowski, J.; Takors, R.; Blombach, B. (2019): Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering,55: 220-230.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936740
Bockwoldt, M.; Houry, D.; Niere, M.; Goßmann, T.; Reinartz, I.; Schug, A.; Ziegler, M.; Heiland, I. (2019): Identification of evolutionary and kinetic drivers of NAD-dependent signaling Proceedings of the National Academy of Sciences,201902346
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936087
Mudalungu, C. M.; von Torne, W. J.; Voigt, K.; Rückert, C.; Schmitz, S.; Sekurova, O. N.; Zotchev, S. B.; Sussmuth, R. D. (2019): Noursamycins, Chlorinated Cyclohexapeptides Identified from Molecular Networking of Streptomyces noursei NTR-SR4. Journal of natural products,82:(6): 1478-1486.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
Huennefeld, M.; Persicke, M.; Kalinowski, J.; Frunzke, J. (2019): The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum FRONTIERS IN MICROBIOLOGY,10:1039
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936138
Kouam, A. D. K.; Kenmogne, S. B.; Lobe, J. S.; Happi, E. N.; Stammler, H. - G.; Waffo, A. F. K.; Sewald, N.; Wansi, J. D. (2019): A rotameric tryptamide alkaloid from the roots of Vepris lecomteana (Pierre) Cheek & T. Heller (Rutaceae) FITOTERAPIA,135: 9-14.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933337
Schulte, F.; Leßmeier, L.; Voß, J.; Ortseifen, V.; Vorhölter, F. - J.; Niehaus, K. (2019): Regulatory associations between the metabolism of sulfur-containing amino acids and xanthan biosynthesis in Xanthomonas campestris pv. campestris B100. FEMS microbiology letters
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig, A.; Helmle, I.; Bader, M.; Wolf, F.; Kulik, A.; Al-Dilaimi, A.; Wibberg, D.; Kalinowski, J.; Gross, H.; Kaysser, L. (2019): Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase CHEMICAL SCIENCE,10:(16): 4486-4490.
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2019 | Bielefelder E-Dissertation | PUB-ID: 2935606 OA
Grunwald, K. (2019): Glykosylierung rekombinant erzeugter Pharmazeutika in Abhängigkeit der Kultivierungsbedingungen. Bielefeld: Universität Bielefeld.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933515
Blume, C.; Ost, J.; Muehlenbruch, M.; Peterhaensel, C.; Laxa, M. (2019): Low CO2 induces urea cycle intermediate accumulation in Arabidopsis thaliana PLOS ONE,14:(1):e0210342
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker, B.; Brockington, S. F. (2018): Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes BMC Genomics,19:980
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932826 OA
Mateos, J. L.; de Leone, M. J.; Torchio, J.; Reichel, M.; Staiger, D. (2018): Beyond Transcription: Fine-Tuning of Circadian timekeeping by post-transcriptional regulation Genes,9:(12):616
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931468 OA
Perez, F.; Jorge, J.; Dreyszas, A.; Risse, J. M.; Wendisch, V. F. (2018): Efficient production of the dicarboxylic acid glutarate by Corynebacterium glutamicum via a novel synthetic pathway Frontiers in Microbiology,9:2589
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2018 | Dissertation | PUB-ID: 2934560
Henke, N. A. (2018): Regulation of carotenoid biosynthesis and metabolic engineering for terpenoid production in Corynebacterium glutamicum. Bielefeld: Universität Bielefeld.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918320
Shih, P. - Y.; Chou, S. - J.; Müller, C.; Halkier, B. A.; Deeken, R.; Lai, E. - M. (2018): Differential roles of glucosinolates and camalexin at different stages of agrobacterium-mediated transformation Molecular Plant Pathology,19:(8): 1956-1970.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider, O.; Simic, N.; Aachmann, F. L.; Rückert, C.; Kristiansen, K. A.; Kalinowski, J.; Jiang, Y.; Wang, L.; Jiang, C. - L.; Lale, R.; Zotchev, S. B. (2018): Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic FRONTIERS IN MICROBIOLOGY,9:3139
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider, O.; Ilic-Tomic, T.; Rückert, C.; Kalinowski, J.; Gencic, M. S.; Zivkovic, M. Z.; Stankovic, N.; Radulovic, N. S.; Vasiljevic, B.; Nikodinovic-Runic, J.; Zotchev, S. B. (2018): Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10 FRONTIERS IN MICROBIOLOGY,9:10
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330
Robledo, M.; Schlueter, J. - P.; Loehr, L. O.; Linne, U.; Albaum, S.; Jimenez-Zurdo, J. I.; Becker, A. (2018): An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA FRONTIERS IN MICROBIOLOGY,9:14
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916928 OA
Schirmer, I.; Dieding, M.; Klauke, B.; Brodehl, A.; Gärtner-Rommel, A.; Walhorn, V.; Gummert, J.; Schulz, U.; Paluszkiewicz, L.; Anselmetti, D.; Milting, H. (2018): A novel desmin (DES) indel mutation causes severe atypical cardiomyopathy in combination with atrioventricular block and skeletal myopathy Molecular Genetics & Genomic Medicine,6:(2): 288-293.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus, C.; Rebets, Y.; Zapp, J.; Rückert, C.; Kalinowski, J.; Luzhetskyy, A. (2018): New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme FRONTIERS IN MICROBIOLOGY,9:1959
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret, M.; Guerrero-Garzon, J. F.; Urban, E.; Zehl, M.; Wronski, V. - K.; Rückert, C.; Busche, T.; Kalinowski, J.; Rollinger, J. M.; Abate, D.; Zotchev, S. B. (2018): Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry FRONTIERS IN MICROBIOLOGY,9:13
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918540 OA
Chaudhari, S. (2018): Systematic metabolic characterization of hydrocarbon and exo-polysaccharide producing microalga Botryococcus braunii. Bielefeld: Universität Bielefeld.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
Alkhateeb, R.; Vorhölter, F. - J.; Steffens, T.; Rückert, C.; Ortseifen, V.; Hublik, G.; Niehaus, K.; Pühler, A. (2018): Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,102:(15): 6613-6625.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Ludwig, P.; Sevin, D. C.; Busche, T.; Kalinowski, J.; Bourdeaux, F.; Grininger, M.; Mack, M. (2018): Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis MICROBIOLOGY-SGM,164:(6): 908-919.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Schwentner, A.; Feith, A.; Muench, E.; Busche, T.; Rückert, C.; Kalinowski, J.; Takors, R.; Blombach, B. (2018): Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum METABOLIC ENGINEERING,47: 31-41.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
Senges, C. H. R.; Al-Dilaimi, A.; Marchbank, D. H.; Wibberg, D.; Winkler, A.; Haltli, B.; Nowrousian, M.; Kalinowski, J.; Kerr, R. G.; Bandow, J. E. (2018): The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,115:(10): 2490-2495.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
Cerletti, M.; Paggi, R.; Troetschel, C.; Celeste Ferrari, M.; Guevara, C. R.; Albaum, S.; Poetsch, A.; De Castro, R. (2018): LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii JOURNAL OF PROTEOME RESEARCH,17:(3): 1158-1171.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Wolf, F.; Leipoldt, F.; Kulik, A.; Wibberg, D.; Kalinowski, J.; Kaysser, L. (2018): Characterization of the Actinonin Biosynthetic Gene Cluster CHEMBIOCHEM,19:(11): 1189-1195.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Mori, T.; Cahn, J. K. B.; Wilson, M. C.; Meoded, R. A.; Wiebach, V.; Martinez, A. F. C.; Helfrich, E. J. N.; Albersmeier, A.; Wibberg, D.; Datwyler, S.; Keren, R.; Lavy, A.; Rückert, C.; Ilan, M.; Kalinowski, J.; Matsunaga, S.; Takeyama, H.; Piel, J. (2018): Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,115:(8): 1718-1723.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Spohn, M.; Edenhart, S.; Alanjary, M.; Ziemert, N.; Wibberg, D.; Kalinowski, J.; Niedermeyer, T. H. J.; Stegmann, E.; Wohlleben, W. (2018): Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA) METALLOMICS,10:(5): 722-734.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662 OA
Fernandes de Brito, L.; Irla, M.; Kalinowski, J.; Wendisch, V. F. (2017): Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology BMC Genomics,18:846
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110 OA
Kulis-Horn, R.; Rückert, C.; Kalinowski, J.; Persicke, M. (2017): Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond BMC Microbiology,17:(1):161
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116 OA
Wolf, T.; Droste, J.; Gren, T.; Ortseifen, V.; Schneiker-Bekel, S.; Zemke, T.; Pühler, A.; Kalinowski, J. (2017): The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110 BMC Genomics,18:562
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909045 OA
Henke, N. A.; Heider, S.; Hannibal, S.; Wendisch, V. F.; Peters-Wendisch, P. (2017): Isoprenoid pyrophosphate-dependent transcriptional regulation of carotenogenesis in Corynebacterium glutamicum Frontiers in Microbiology,8:633
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907915 OA
Taniguchi, H.; Henke, N. A.; Heider, S.; Wendisch, V. F. (2017): Overexpression of the primary sigma factor gene sigA improved carotenoid production by Corynebacterium glutamicum: application to production of beta-carotene and the non-native linear C50 carotenoid bisanhydrobacterioruberin Metabolic Engineering Communications,4: 1-11.
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2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Tokovenko, B.; Rückert, C.; Kalinowski, J.; Mohammadipanah, F.; Wink, J.; Rosenkränzer, B.; Myronovskyi, M.; Luzhetskyy, A. (2017): Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease. Genome Announc,5:(20)
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914675
Schnepel, C.; Sewald, N. (2017): Enzymatic Halogenation: A Timely Strategy for Regioselective C-H Activation CHEMISTRY-A EUROPEAN JOURNAL,23:(50): 12064-12086.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913152
Bhambhani, S.; Lakhwani, D.; Gupta, P.; Pandey, A.; Dhar, Y. V.; Bag, S. K.; Asif, M. H.; Trivedi, P. K. (2017): Transcriptome and metabolite analyses in Azadirachta indica: identification of genes involved in biosynthesis of bioactive triterpenoids SCIENTIFIC REPORTS,7:5043
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2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
Crnovčić, I.; Rückert, C.; Semsary, S.; Lang, M.; Kalinowski, J.; Keller, U. (2017): Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. Adv Appl Bioinform Chem,10: 29-46.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
Hillion, M.; Bernhardt, J.; Busche, T.; Rossius, M.; Maaß, S.; Becher, D.; Rawat, M.; Wirtz, M.; Hell, R.; Rückert, C.; Kalinowski, J.; Antelmann, H. (2017): Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress. Sci Rep,7:(1):1195
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
Paulus, C.; Rebets, Y.; Tokovenko, B.; Nadmid, S.; Terekhova, L. P.; Myronovskyi, M.; Zotchev, S. B.; Rückert, C.; Braig, S.; Zahler, S.; Kalinowski, J.; Luzhetskyy, A. (2017): New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18 SCIENTIFIC REPORTS,7:42382
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2017 | Datenpublikation | PUB-ID: 2930821 OA
Karsten, L.; Bergen, D.; Drake, C.; Dymek, S.; Edich, M.; Haak, M.; Kerkhoff, D.; Kerkhoff, Y.; Liebers, M.; März, C.; Schlüter, L.; Schmidt, O.; Vinke, S.; M. Whitford, C.; Pucker, B.; Droste, J.; Rückert, C.; M. Müller, K.; Kalinowski, J. (2017): Expanding The Genetic Code. Bielefeld University.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2913669 OA
Fernandes de Brito, L. (2017): Genomic, transcriptomic and phenotypic analysis of the plant growth promoting and phosphate solubilizing Paenibacillus riograndensis SBR5. Bielefeld: Universität Bielefeld.
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