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56 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919297
Schillingmann, Lars, Ernst, Jessica, Keite, Verena, Wrede, Britta, Meyer, Antje S., and Belke, Eva. “AlignTool: The automatic temporal alignment of spoken utterances in German, Dutch, and British English for psycholinguistic purposes”. BEHAVIOR RESEARCH METHODS 50.2 (2018): 466-489.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, Benedikt, Chauve, Cedric, Ponty, Yann, and Giegerich, Robert. “The BRaliBase Dent – a Tale of Benchmark Design and Interpretation”. Briefings in Bioinformatics 18.2 (2017): 306-311.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2904509 OA
Paaßen, Benjamin, Jensen, Joris, and Hammer, Barbara. “Execution Traces as a Powerful Data Representation for Intelligent Tutoring Systems for Programming”. Proceedings of the 9th International Conference on Educational Data Mining. Ed. Tiffany Barnes, Min Chi, and Mingyu Feng. Raleigh, North Carolina, USA: International Educational Datamining Society, 2016. 183-190.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900648
Lewinski, Martin, Hallmann, Armin, and Staiger, Dorothee. “Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues”. Molecular Genetics and Genomics 291.2 (2016): 763-773.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909091
Trapphoff, Tom, Heiligentag, Martyna, Simon, Jenny, Staubach, Nora, Seidel, Thorsten, Otte, Kathrin, Froehlich, Thomas, Arnold, Georg J., and Eichenlaub-Ritter, Ursula. “Improved cryotolerance and developmental potential of in vitro and in vivo matured mouse oocytes by supplementing with a glutathione donor prior to vitrification”. MOLECULAR HUMAN REPRODUCTION 22.12 (2016): 867-881.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2724156 OA
Paaßen, Benjamin, Mokbel, Bassam, and Hammer, Barbara. “Adaptive structure metrics for automated feedback provision in Java programming”. Proceedings of the ESANN, 23rd European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning. Ed. Michel Verleysen. 2015. 307-312.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2762087
Paaßen, Benjamin, Mokbel, Bassam, and Hammer, Barbara. “A Toolbox for Adaptive Sequence Dissimilarity Measures for Intelligent Tutoring Systems”. Proceedings of the 8th International Conference on Educational Data Mining. Ed. Olga Christina Santos, Jesus Gonzalez Boticario, Cristobal Romero, Mykola Pechenizkiy, Agathe Merceron, Piotr Mitros, Jose Maria Luna, Christian Mihaescu, Pablo Moreno, Arnon Hershkovitz, Sebastian Ventura, and Michel Desmarais. International Educational Datamining Society, 2015. 632-632.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730760
Vollmer, Anna-Lisa, Rohlfing, Katharina, Wrede, Britta, and Cangelosi, Angelo. “Alignment to the Actions of a Robot”. International Journal of Social Robotics 7.2 (2015): 241-252.
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2015 | Bielefelder Masterarbeit | PUB-ID: 2736686 OA
Paaßen, Benjamin. Adaptive Affine Sequence Alignment Using Algebraic Dynamic Programming. Bielefeld: Bielefeld University, 2015.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2784346 OA
Malchus, Karoline. Evaluation emotionaler und kommunikativer Verhaltensweisen in Mensch-Roboter Interaktionen in therapierelevanten Szenarien zur Entwicklung eines Modells für die roboterunterstützte Therapie bei Sprach- und Kommunikationsstörungen. Bielefeld: Universität Bielefeld, 2015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, Robert, and Touzet, Hélène. “Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems”. Algorithms 7.1 (2014): 62-144.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2677466 OA
Hoffmann, Nils. Computational methods for high-throughput metabolomics. Bielefeld: Universität Bielefeld, 2014.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2673554 OA
Mokbel, Bassam, Paaßen, Benjamin, and Hammer, Barbara. “Adaptive distance measures for sequential data”. ESANN, 22nd European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning. Ed. Michel Verleysen. Bruges, Belgium: i6doc.com, 2014. 265-270.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2710067 OA
Mokbel, Bassam, Paaßen, Benjamin, and Hammer, Barbara. “Efficient Adaptation of Structure Metrics in Prototype-Based Classification”. Artificial Neural Networks and Machine Learning - ICANN 2014 - 24th International Conference on Artificial Neural Networks, Hamburg, Germany, September 15-19, 2014. Proceedings. Ed. Stefan Wermter, Cornelius Weber, Włodzisław Duch, Timo Honkela, Petia Koprinkova-Hristova, Sven Magg, Günther Palm, and Allessandro Villa. Springer, 2014.Vol. 8681. Lecture Notes in Computer Science. 571-578.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, Benedikt, and Giegerich, Robert. “Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment”. German Conference on Bioinformatics 2013. Ed. Tim Beißbarth, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013.Vol. 34. OpenAccess Series in Informatics (OASIcs). 110-124.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, Stefanie, and Giegerich, Robert. “Forest alignment with affine gaps and anchors, applied in RNA structure comparison”. Theoretical Computer Science 483 (2013): 51-67.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2522299 OA
Lücking, Andy, Bergmann, Kirsten, Hahn, Florian, Kopp, Stefan, and Rieser, Hannes. “Data-based analysis of speech and gesture: the Bielefeld Speech and Gesture Alignment corpus (SaGA) and its applications”. Journal on Multimodal User Interfaces 7.1-2 (2013): 5-18.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
Marschall, T., Herms, Inke, Kaltenbach, Hans-Michael, and Rahmann, Sven. “Probabilistic Arithmetic Automata and Their Applications”. Ieee/Acm Transactions On Computational Biology And Bioinformatics 9.6 (2012): 1737-1750.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2502563
Mehler, Alexander, Lücking, Andy, and Menke, Peter. “Assessing cognitive alignment in different types of dialog by means of a network model”. Neural Networks 32 (2012): 159-164.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536055
Ayllon Clemente, Irene, Heckmann, Martin, and Wrede, Britta. “Incremental word learning: Efficient HMM initialization and large margin discriminative adaptation”. Speech Communication 54.9 (2012): 1029-1048.
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2047086 OA
Pietsch, Christian, Buch, Armin, Kopp, Stefan, and de Ruiter, Jan. “Measuring Syntactic Priming in Dialogue Corpora”. Empirical Approaches to Linguistic Theory: Studies in Meaning and Structure. Ed. Britta Stolterfoht and Sam Featherston. Berlin: Mouton de Gruyter, 2012.Vol. 111. Studies in Generative Grammar [SGG]. 29-42.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2634598 OA
Nam, Jinseok, Bergmann, Kirsten, Waltinger, Ulli, Kopp, Stefan, Wachsmuth, Ipke, and Zhang, Byoung-Tak. “Deciphering the communicative code in speech and gesture dialogues by autoencoding hypernetworks”. Presented at the ESLP 2011: Embodied and Situated Language Processing, Center for Interdisciplinary Research (ZiF), Bielefeld University, Germany, 2011.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2472968 OA
Venkatesh, Alagarswamy. Novel platform for DNA alignment and studying DNA-protein interaction in realtime. Bielefeld: Universität, 2011.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238 OA
Schirmer, Stefanie. Comparing forests. Bielefeld: Bielefeld University, 2011.
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2011 | Bielefelder Masterarbeit | PUB-ID: 2519405 OA
Neumann, Alexander. Design and implementation of multi-modal AR-based interaction for cooperative planning tasks. Bielefeld: Bielefeld University, 2011.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2305344 OA
Swadzba, Agnes. The robot's vista space : a computational 3D scene analysis. Bielefeld (Germany): Bielefeld University, 2011.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2034628
Damm, Oliver, Dreier, Karoline, Hegel, Frank, Jaecks, Petra, Stenneken, Prisca, Wrede, Britta, and Hielscher-Fastabend, Martina. “Communicating emotions in robotics: Towards a model of emotional alignment”. HRI2011-Workshop: The role of expectations in intuitive human-robot interaction. 2011.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1893922 OA
Buschmeier, Hendrik, Bergmann, Kirsten, and Kopp, Stefan. “Modelling and Evaluation of Lexical and Syntactic Alignment with a Priming-Based Microplanner”. Empiricial Methods in Natural Language Generation. Ed. Emiel Krahmer and Mariët Theune. Berlin/Heidelberg, Germany: Springer, 2010.Vol. 5790. Lecture Notes in Computer Science. 85-104.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1901698 OA
Buschmeier, Hendrik, Bergmann, Kirsten, and Kopp, Stefan. “Adaptive Expressiveness – Virtual Conversational Agents That Can Align to Their Interaction Partner”. Proceedings of the 9th International Conference on Autonomous Agents and Multiagent Systems. Ed. Wiebe van der Hoek, Gal A. Kaminka, Michael Luck, and Sandip Sen. International Foundation for Autonomous Agents and Multiagent Systems, 2010. 91-98.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1948769 OA
Mehler, Alexander, Lücking, Andy, and Weiß, Petra. “A network model of interpersonal alignment in dialog”. Entropy 12.6 (2010): 1440-1483.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
Neuweger, Heiko. MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1998826 OA
Pfeiffer-Leßmann, Nadine, and Wachsmuth, Ipke. “Formalizing joint attention in cooperative interaction with a virtual human”. KI 2009: Advances in Artificial Intelligence. Ed. Bärbel Mertsching, Marcus Hund, and Zaheer Aziz. Berlin: Springer, 2009.Vol. LNAI 5803. 540-547.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1857963 OA
Buschmeier, Hendrik, Bergmann, Kirsten, and Kopp, Stefan. “An Alignment-capable Microplanner for Natural Language Generation”. Proceedings of the 12th European Workshop on Natural Language Generation. Association for Computational Linguistics, 2009. 82-89.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1987346
Dierker, Angelika, Bovermann, Till, Hanheide, Marc, Hermann, Thomas, and Sagerer, Gerhard. “A Multimodal Augmented Reality System for Alignment Research”. Proceedings of the 13th International Conference on Human-Computer Interaction. New York, Heidelberg: Springer, 2009. 422-426.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549797
Alphey, Magnus S, König, Janine, and Fairlamb, Alan H. “Structural and mechanistic insights into type II trypanosomatid tryparedoxin-dependent peroxidases”. The Biochemical Journal 414.3 (2008): 375-381.
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2008 | Bielefelder Masterarbeit | PUB-ID: 2302036 OA
Mertes, Christian. Multimodal augmented reality to enhance human communication. Bielefeld (Germany): Bielefeld University, 2008.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert, Constantin. Flexible protein annotation with sequence- and secondary structure information. Bielefeld (Germany): Bielefeld University, 2008.
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2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1998607
Koesling, Hendrik. “Co-spot the difference - multi-modal alignment in joint tasks”. 9. Fachtagung der Gesellschaft für Kognitionswissenschaft (KogWis). Dresden: C. Hille, 2008. 43.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2304243 OA
Abdurrouf, A. Intense-field theory of high harmonic generation from freely rotating molecules. Bielefeld (Germany): Bielefeld University, 2007.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631458
Kabachnik, Nikolay M., Fritzsche, S., Grum-Grzhimailo, A. N., Meyer, M., and Ueda, K. “Coherence and correlations in photoinduced auger and fluorescence cascades in atoms”. Physics Reports 451.5-6 (2007): 155-233.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2301459 OA
Teserra, Saba Amsalu. Bilingual word and chunk alignment : a hybrid system for Amharic and English. Bielefeld: Bielefeld University, 2007.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599570
Rasmussen, Kim R., Stoye, Jens, and Myers, Eugene W. “Efficient q-gram filters for finding all epsilon-matches over a given length”. JOURNAL OF COMPUTATIONAL BIOLOGY 13.2 (2006): 296-308.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1927900
Niemann, Hartmut, Schmoldt, H. U., Wentzel, A., Kolmar, H., and Heinz, D. W. “Barnase fusion as a tool to determine the crystal structure of the small disulfide-rich protein McoEeTI”. J Mol Biol 356.1 (2006): 1-8.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597213
Sammeth, Michael, and Stoye, Jens. “Comparing tandem repeats with duplications and excisions of variable degree”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 3.4 (2006): 395-407.
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2005 | Report | PUB-ID: 1970470 OA
Sammeth, Michael, and Stoye, Jens. Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). Bielefeld: Technische Fakultät der Universität Bielefeld, 2005. Forschungsberichte.
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2005 | Bielefelder E-Dissertation | PUB-ID: 2301827 OA
Sammeth, Michael. Integrated multiple sequence alignment. Bielefeld (Germany): Bielefeld University, 2005.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1606286
Michael, Morris, Dieterich, Christoph, and Stoye, Jens. “Suboptimal Local Alignments across Multiple Scoring Schemes”. Proc. of WABI 2004. SPRINGER-VERLAG BERLIN, 2004.Vol. 3240. LNBI. 99-110.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, and Morgenstern, B. “AGenDA: gene prediction by cross-species sequence comparison”. Nucleic Acids Research 32.Web Server (2004): W305-W308.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293
Höchsmann, Matthias, Voss, Björn, and Giegerich, Robert. “Pure multiple RNA secondary structure alignments: A progressive profile approach”. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS 1.1 (2004): 53-62.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996206
Grasser, Klaus D, Grill, Simon, Duroux, Meg, Launholt, Dorte, Thomsen, Malene S, Nielsen, Birthe V, Nielsen, Hanne K, and Merkle, Thomas. “HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein”. Biochemistry 43.5 (2004): 1309-1314.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610941
König, Janine, Lotte, Kirsten, Plessow, Regina, Brockhinke, Andreas, Baier, Margarete, and Dietz, Karl-Josef. “Reaction mechanism of plant 2-Cys peroxiredoxin - Role of the C terminus and the quaternary structure”. JOURNAL OF BIOLOGICAL CHEMISTRY 278.27 (2003): 24409-24420.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2577014
Dichtl, Bernhard, Blank, Diana, Sadowski, Martin, Hübner, Wolfgang, Weiser, Stefan, and Keller, Walter. “Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination”. The EMBO journal 21.15 (2002): 4125-4135.
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2001 | Bielefelder E-Dissertation | PUB-ID: 2304844 OA
Büschking, Christian. Incorporation of structural information in RNA sequence alignment. Bielefeld (Germany): Bielefeld University, 2001.
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1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773355 OA
Stoye, Jens, Perrey, Sören W., and Dress, Andreas. “Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment”. Applied mathematics letters 10.2 (1997): 67-73.
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1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773358
Brinkmann, Gunnar, Dress, Andreas, Perrey, Sören W., and Stoye, Jens. “Two applications of the Divide & Conquer principle in the molecular sciences”. Mathematical programming 79.1-3 (1997): 71-97.
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1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773351
Tönges, Udo, Perrey, Sören W., Stoye, Jens, and Dress, Andreas. “A general method for fast multiple sequence alignment”. Gene 172.1 (1996): GC33-GC41.
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