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50 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Computing the family-free DCJ similarity
Rubert, Diego, Computing the family-free DCJ similarity. BMC Bioinformatics 19 (Suppl. 6). , 2018
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910493
The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes
Romano, Paolo, The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. BMC BIOINFORMATICS 18 (). , 2017
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907670
Fast ancestral gene order reconstruction of genomes with unequal gene content
Feijão, Pedro, Fast ancestral gene order reconstruction of genomes with unequal gene content. BMC Bioinformatics 17 (S14). , 2016
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617
SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome
Stadermann, Kai Bernd, SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. BMC Bioinformatics 16 (). , 2015
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888
Ambivalent covariance models
Janssen, Stefan, Ambivalent covariance models. BMC Bioinformatics 16 (). , 2015
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900856
On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance
Feijão, Pedro, On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance. BMC Bioinformatics 16 (Suppl 19). , 2015
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2783101
Reconstruction of ancestral gene orders using intermediate genomes
Feijão, Pedro, Reconstruction of ancestral gene orders using intermediate genomes. BMC Bioinformatics 16 (Suppl 14). , 2015
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
Ander, Christina, metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinformatics 14 (Suppl 5: Proc. of RECOMB-Seq 2013). , 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Statistics for approximate gene clusters
Jahn, Katharina, Statistics for approximate gene clusters. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013). , 2013
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
Gene family assignment-free comparative genomics
Dörr, Daniel, Gene family assignment-free comparative genomics. BMC Bioinformatics 13 (Suppl 19: Proc. of RECOMB-CG 2012). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann, Nils, Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics 13 (1). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
Linearization of ancestral multichromosomal genomes
Manuch, Jan, Linearization of ancestral multichromosomal genomes. BMC Bioinformatics 13 (Proc. of RECOMB-CG 2012). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package
El-Kalioby, Mohamed, Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinformatics 13 (Suppl 17). , 2012
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
Janssen, Stefan, Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12 (1). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082
BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Loyek, Christian, BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics 12 (1). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603576
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers
Thomas, Philippe E., Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. BMC Bioinformatics 12 (Suppl 4). , 2011
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes
Wittler, Roland, Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. 12 (Suppl. 9). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2425310
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Wolfsheimer, Stefan, Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling. BMC Bioinformatics 12 (1). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091779
Swiftly Computing Center Strings
Hufsky, Franziska, Swiftly Computing Center Strings. BMC Bioinformatics 12 (1). , 2011
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Fine-tuning structural RNA alignments in the twilight zone
Bremges, Andreas, Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics 11 (1). , 2010
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316624
Geoseq: a tool for dissecting deep-sequencing datasets
Gurtowski, James, Geoseq: a tool for dissecting deep-sequencing datasets. BMC Bioinformatics 11 (1). , 2010
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512
Fine-tuning structural RNA alignments in the twilight zone
Bremges, Andreas, Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics 11 (1). , 2010
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603504
Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research
Corinna, Kolarik, Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research. BMC Bioinformatics 10 (Suppl 1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen, EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz, Naryttza N., TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael, EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang, WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10 (1). , 2009
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht, Anna-Lena, GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics 9 (Suppl 4). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025
Efficient computation of absent words in genomic sequences
Herold, Julia, Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783280
An incremental approach to automated protein localisation
Tscherepanow, Marko, An incremental approach to automated protein localisation. BMC Bioinformatics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm, Wiebke, Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611
A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification
Wei, Ning, A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917
Shape based indexing for faster search of RNA family databases
Janssen, Stefan, Shape based indexing for faster search of RNA family databases. BMC Bioinformatics 9 (1). , 2008
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499132
CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks.
Baumbach, J., CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks.. BMC Bioinformatics 8 (1). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783712
SAMPI: protein identification with mass spectra alignments
Kaltenbach, Hans-Michael, SAMPI: protein identification with mass spectra alignments. BMC Bioinformatics 8 (1). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783743
CoryneRegNet 4.0: a reference database for corynebacterial gene regulatory networks
Baumbach, Jan, CoryneRegNet 4.0: a reference database for corynebacterial gene regulatory networks. BMC Bioinformatics 8 (1). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784011
Large scale clustering of protein sequences with FORCE - a layout based heuristic for weighted cluster editing
Wittkop, Tobias, Large scale clustering of protein sequences with FORCE - a layout based heuristic for weighted cluster editing. BMC Bioinformatics 8 (1). , 2007
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773701
Quality control for terms and definitions in ontologies and taxonomies
Köhler, Jacob, Quality control for terms and definitions in ontologies and taxonomies. BMC Bioinformatics 7 (1). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864
Fast index based algorithms and software for matching position specific scoring matrices
Beckstette, Michael, Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7 (1). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773871
XML schemas for common bioinformatic data types and their application in workflow systems
Seibel, Philipp N., XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics 7 (1). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773640
Correction: Versatile and declarative dynamic programming using pair algebras
Steffen, Peter, Correction: Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics 7 (1). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599756
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Spitzer, M, IsoSVM - Distinguishing isoforms and paralogs on the protein level. BMC Bioinformatics 7 (1). , 2006
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775168
Large scale hierarchical clustering of protein sequences
Krause, Antje, Large scale hierarchical clustering of protein sequences. BMC Bioinformatics 6 (1). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773595
Effective ambiguity checking in biosequence analysis
Reeder, Janina, Effective ambiguity checking in biosequence analysis. BMC Bioinformatics 6 (1). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773598
Versatile and declarative dynamic programming using pair algebras
Steffen, Peter, Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics 6 (1). , 2005
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773554
Correction: Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A., Correction: Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5 (1). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773758
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Reeder, Jens, Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics 5 (1). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773312
Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A., Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5 (1). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773747
A comprehensive comparison of comparative RNA structure prediction approaches
Gardner, Paul P., A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics 5 (1). , 2004
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773767
Fast and sensitive multiple alignment of large genomic sequences
Brudno, Michael, Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4 (1). , 2003
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