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50 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
D. Rubert, E. A. Hoshino, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, “Computing the family-free DCJ similarity”, BMC Bioinformatics, 2018, 19, : 152.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910493
P. Romano, R. Hofestädt, M. Lange, and D. D'Elia, “The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes”, BMC BIOINFORMATICS, 2017, 18, : 101.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907670
P. Feijão, and F. E. Soares de Araujo, “Fast ancestral gene order reconstruction of genomes with unequal gene content”, BMC Bioinformatics, 2016, 17, : 413.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617
K. B. Stadermann, B. Weisshaar, and D. Holtgräwe, “SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome”, BMC Bioinformatics, 2015, 16, : 295.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888
S. Janssen, and R. Giegerich, “Ambivalent covariance models”, BMC Bioinformatics, 2015, 16, : 178.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900856
P. Feijão, F. Martinez, and A. Thévenin, “On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance”, BMC Bioinformatics, 2015, 16, : S1.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2783101
P. Feijão, “Reconstruction of ancestral gene orders using intermediate genomes”, BMC Bioinformatics, 2015, 16, : S3.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, O. B. Schulz-Trieglaff, J. Stoye, and A. J. Cox, “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, 2013, 14, S2.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, S. Winter, J. Stoye, and S. Böcker, “Statistics for approximate gene clusters”, BMC Bioinformatics, 2013, 14, S14.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, 2012, 13, S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
N. Hoffmann, M. Keck, H. Neuweger, M. Wilhelm, P. Högy, K. Niehaus, and J. Stoye, “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, 2012, 13, 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
J. Manuch, M. Patterson, R. Wittler, C. Chauve, and E. Tannier, “Linearization of ancestral multichromosomal genomes”, BMC Bioinformatics, 2012, 13.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
M. El-Kalioby, M. Abouelhoda, J. Krüger, R. Giegerich, A. Sczyrba, D. P. Wall, and P. Tonellato, “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”, BMC Bioinformatics, 2012, 13, S22.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526
S. Janssen, C. Schudoma, G. Steger, and R. Giegerich, “Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction”, BMC Bioinformatics, 2011, 12, 429.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082
C. Loyek, M. Khan, N. Rajpoot, and T. W. Nattkemper, “BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data”, BMC Bioinformatics, 2011, 12, 297.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603576
P. E. Thomas, R. Klinger, L. I. Furlong, M. Hofmann-Apitius, and C. M. Friedrich, “Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers”, BMC Bioinformatics, 2011, 12, S4.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
R. Wittler, and C. Chauve, “Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes”, BMC Bioinformatics, 2011, 12, S21.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2425310
S. Wolfsheimer, I. Herms, S. Rahmann, and A. K. Hartmann, “Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling”, BMC Bioinformatics, 2011, 12, 47-2105.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091779
F. Hufsky, L. Kuchenbecker, K. Jahn, J. Stoye, and S. Böcker, “Swiftly Computing Center Strings”, BMC Bioinformatics, 2011, 12, 106.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
A. Bremges, S. Schirmer, and R. Giegerich, “Fine-tuning structural RNA alignments in the twilight zone”, BMC Bioinformatics, 2010, 11, : 222.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316624
J. Gurtowski, A. Cancio, H. Shah, C. Levovitz, A. George, R. Homann, and R. Sachidanandam, “Geoseq: a tool for dissecting deep-sequencing datasets”, BMC Bioinformatics, 2010, 11, 506.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512
A. Bremges, S. Schirmer, and R. Giegerich, “Fine-tuning structural RNA alignments in the twilight zone”, BMC Bioinformatics, 2010, 11, 222.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603504
K. Corinna, R. Klinger, and M. Hofmann-Apitius, “Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research”, BMC Bioinformatics, 2009, 10, S28.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020
A. - L. Lamprecht, T. Margaria, B. Steffen, A. Sczyrba, S. Hartmeier, and R. Giegerich, “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”, BMC Bioinformatics, 2008, 9, S13.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025
J. Herold, S. Kurtz, and R. Giegerich, “Efficient computation of absent words in genomic sequences”, BMC Bioinformatics, 2008, 9, 167.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783280
M. Tscherepanow, N. Jensen, and F. Kummert, “An incremental approach to automated protein localisation”, BMC Bioinformatics, 2008, 9, 445.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280
W. Timm, A. Scherbart, S. Boecker, O. Kohlbacher, and T. W. Nattkemper, “Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics”, BMC Bioinformatics, 2008, 9, 443.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611
N. Wei, E. Flaschel, K. Friehs, and T. W. Nattkemper, “A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification”, BMC Bioinformatics, 2008, 9, 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917
S. Janssen, J. Reeder, and R. Giegerich, “Shape based indexing for faster search of RNA family databases”, BMC Bioinformatics, 2008, 9, 131.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499132
J. Baumbach, “CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks.”, BMC Bioinformatics, 2007, 8, 429.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783712
H. - M. Kaltenbach, A. Wilke, and S. Böcker, “SAMPI: protein identification with mass spectra alignments”, BMC Bioinformatics, 2007, 8, 102.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783743
J. Baumbach, “CoryneRegNet 4.0: a reference database for corynebacterial gene regulatory networks”, BMC Bioinformatics, 2007, 8, 429.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784011
T. Wittkop, J. Baumbach, F. P. Lobo, and S. Rahmann, “Large scale clustering of protein sequences with FORCE - a layout based heuristic for weighted cluster editing”, BMC Bioinformatics, 2007, 8, 396.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773701
J. Köhler, K. Munn, A. Rüegg, A. Skusa, and B. Smith, “Quality control for terms and definitions in ontologies and taxonomies”, BMC Bioinformatics, 2006, 7, 212.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864
M. Beckstette, R. Homann, R. Giegerich, and S. Kurtz, “Fast index based algorithms and software for matching position specific scoring matrices”, BMC Bioinformatics, 2006, 7, 389.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773871
P. N. Seibel, J. Krüger, S. Hartmeier, K. Schwarzer, K. Löwenthal, H. Mersch, T. Dandekar, and R. Giegerich, “XML schemas for common bioinformatic data types and their application in workflow systems”, BMC Bioinformatics, 2006, 7, 490.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773640
P. Steffen, and R. Giegerich, “Correction: Versatile and declarative dynamic programming using pair algebras”, BMC Bioinformatics, 2006, 7, 214.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599756
M. Spitzer, S. Lorkowski, P. Cullen, A. Sczyrba, and G. Fuellen, “IsoSVM - Distinguishing isoforms and paralogs on the protein level”, BMC Bioinformatics, 2006, 7, 110.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775168
A. Krause, J. Stoye, and M. Vingron, “Large scale hierarchical clustering of protein sequences”, BMC Bioinformatics, 2005, 6, 15.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773595
J. Reeder, P. Steffen, and R. Giegerich, “Effective ambiguity checking in biosequence analysis”, BMC Bioinformatics, 2005, 6, 153.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773598
P. Steffen, and R. Giegerich, “Versatile and declarative dynamic programming using pair algebras”, BMC Bioinformatics, 2005, 6, 224.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773554
D. A. Pollard, C. M. Bergman, J. Stoye, S. E. Celniker, and M. B. Eisen, “Correction: Benchmarking tools for the alignment of functional noncoding DNA”, BMC Bioinformatics, 2004, 5, 73.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773758
J. Reeder, and R. Giegerich, “Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics”, BMC Bioinformatics, 2004, 5, 104.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773312
D. A. Pollard, C. M. Bergman, J. Stoye, S. E. Celniker, and M. B. Eisen, “Benchmarking tools for the alignment of functional noncoding DNA”, BMC Bioinformatics, 2004, 5, 6.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773747
P. P. Gardner, and R. Giegerich, “A comprehensive comparison of comparative RNA structure prediction approaches”, BMC Bioinformatics, 2004, 5, 140.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773767
M. Brudno, M. Chapman, B. Göttgens, S. Batzoglou, and B. Morgenstern, “Fast and sensitive multiple alignment of large genomic sequences”, BMC Bioinformatics, 2003, 4, 66.
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