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79 Publikationen

2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst, Scott, Hide, Winston, Lipták, Zsuzsanna, Nogueira, Ramon, and Starfield, Richard. 2008. “An overview of the wcd EST clustering tool”. BIOINFORMATICS 24 (13): 1542-1546.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, Christian, Diaz, Naryttza N., Ontrup, Jörg, and Nattkemper, Tim Wilhelm. 2008. “Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification”. Bioinformatics 24 (14): 1568-1574.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594917
Välimäki, Niko, Gerlach, Wolfgang, Dixit, Kashyap, and Mäkinen, Veli. 2007. “Compressed suffix tree - a basis for genome-scale sequence analysis”. BIOINFORMATICS 23 (5): 629-630.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132
Reeder, Janina, Reeder, Jens, and Giegerich, Robert. 2007. “Locomotif: from graphical motif description to RNA motif search”. In Bioinformatics, 23:I392-I400. Bioinformatics. OXFORD UNIV PRESS.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1631967
Schliep, Alexander, and Rahmann, Sven. 2006. “Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree”. In Bioinformatics, 22:e424-e430. Bioinformatics. Oxford Univ. Press.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499691
Köhler, Jacob, Baumbach, Jan, Taubert, Jan, Specht, Michael, Skusa, Andre, Rüegg, Alexander, Rawlings, Chris, Verrier, Paul, and Philippi, Stephan. 2006. “Graph-based analysis and visualization of experimental results with ONDEX”. Bioinformatics 22 (11): 1383-1390.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659363
Feijão, Pedro, Neiva, L. S., Azeredo-Espin, A. M. L. d., and Lessinger, A. C. 2006. “AMiGA: the arthropodan mitochondrial genomes accessible database”. Bioinformatics 22 (7): 902-903.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
Gerlach, Wolfgang, and Giegerich, Robert. 2006. “GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.”. Bioinformatics 22 (6): 762-764.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599943
Sammeth, Michael, Griebel, Thasso, Tille, Felix, and Stoye, Jens. 2006. “Panta rhei (QAlign2): an open graphical environment for sequence analysis”. BIOINFORMATICS 22 (7): 889-890.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421
Steffen, Peter, Voss, Björn, Rehmsmeier, Marc, Reeder, Jens, and Giegerich, Robert. 2006. “RNAshapes: an integrated RNA analysis package based on abstract shapes”. Bioinformatics 22 (4): 500-503.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause, Lutz, Diaz, Naryttza N., Bartels, Daniela, Edwards, Robert A., Pühler, Alfred, Rohwer, Forest, Meyer, Folker, and Stoye, Jens. 2006. “Finding novel genes in bacterial communities isolated from the environment”. BIOINFORMATICS 22 (14): e281-e289.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
Bartels, Daniela, Kespohl, Sebastian, Albaum, Stefan, Drüke, Tanja, Goesmann, Alexander, Herold, Julia, Kaiser, Olaf, et al. 2005. “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”. Bioinformatics 21 (7): 853-859.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604896
Zöllner, Frank, Neumann, Steffen, Kummert, Franz, and Sagerer, Gerhard. 2005. “Database driven test case generation for protein-protein docking”. Bioinformatics 21 (5): 683-684.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy, A. C., Goesmann, Alexander, Pühler, Alfred, and Meyer, F. 2004. “Development of joint application strategies for two microbial gene finders”. BIOINFORMATICS 20 (10): 1622-1631.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822
Choudhuri, Jomuna V, Schleiermacher, Chirs, Kurtz, Stefan, and Giegerich, Robert. 2004. “GenAlyzer: interactive visualization of sequence similarities between entire genomes”. BIOINFORMATICS 20 (12): 1964-1965.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419
Voss, Björn, Meyer, Carsten, and Giegerich, Robert. 2004. “Evaluating the predictability of conformational switching in RNA”. Bioinformatics 20 (10): 1573-1582.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610494
Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, Brudno, M, Batzoglou, S, and Morgenstern, B. 2003. “AGenDA: homology-based gene prediction”. BIOINFORMATICS 19 (12): 1575-1577.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612470
Morgenstern, B, Goel, S, Sczyrba, Alexander, and Dress, Andreas. 2003. “AltAVisT: Comparing alternative multiple sequence alignments”. BIOINFORMATICS 19 (3): 425-426.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610687
Li, Yong, Rosso, Mario G., Strizhov, Nicolai, Viehöver, Prisca, and Weisshaar, Bernd. 2003. “GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana”. Bioinformatics 19 (11): 1441-1442.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609403 OA
Sammeth, Michael, Morgenstern, Burkhard, and Stoye, Jens. 2003. “Divide-and-conquer multiple alignment with segment-based constraints”. BIOINFORMATICS 19 (Suppl 2): ii189-ii195.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610503 OA
Sammeth, Michael, Rothgänger, Jörg, Esser, Wolfram, Albert, Jürgen, Stoye, Jens, and Harmsen, Dag. 2003. “QAlign: quality-based multiple alignments with dynamic phylogenetic analysis”. BIOINFORMATICS 19 (12): 1592-1593.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, Alexander, Haubrock, Martin, Meyer, Folker, Kalinowski, Jörn, and Giegerich, Robert. 2002. “PathFinder: reconstruction and dynamic visualization of metabolic pathways”. BIOINFORMATICS 18 (1): 124-129.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
Bergeron, Anne, Heber, Steffen, and Stoye, Jens. 2002. “Common intervals and sorting by reversals: a marriage of necessity”. Bioinformatics 18 (Suppl 2): S54-S63.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572
Fuellen, Georg, Wägele, J. Wolfgang, and Giegerich, Robert. 2001. “Minimum conflict: a divide-and-conquer approach to phylogeny estimation”. BIOINFORMATICS 17 (12): 1168-1178.
PUB | DOI | WoS | PubMed | Europe PMC
 
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574
Giegerich, Robert. 2000. “A systematic approach to dynamic programming in bioinformatics”. BIOINFORMATICS 16 (8): 665-677.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773341 OA
Reinert, Knut, Stoye, Jens, and Will, Torsten. 2000. “An iterative method for faster sum-of-pairs multiple sequence alignment”. Bioinformatics 16 (9): 808-814.
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374
Evers, Dirk J., and Giegerich, Robert. 1999. “RNA movies: visualizing RNA secondary structure spaces”. BIOINFORMATICS 15 (1): 32-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625402 OA
Stoye, Jens, Evers, Dirk, and Meyer, Folker. 1998. “Rose: generating sequence families”. BIOINFORMATICS 14 (2): 157-163.
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1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625406
Ackermann, Friedrich, Herrmann, Grit, Posch, Stefan, and Sagerer, Gerhard. 1998. “Estimation and filtering of potential protein-protein docking positions”. Bioinformatics 14 (2): 196-205.
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