Please note that PUB no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.

79 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Baaijens, Jasmijn A, Van der Roest, Bastiaan, Köster, Johannes, Stougie, Leen, and Schönhuth, Alexander. “Full-length de novo viral quasispecies assembly through variation graph construction”. Bioinformatics 35.24 (2019): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Yin, Bojian, Balvert, Marleen, van der Spek, Rick A A, Dutilh, Bas E, Bohté, Sander, Veldink, Jan, and Schönhuth, Alexander. “Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype”. Bioinformatics 35.14 (2019): i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Baaijens, Jasmijn A, and Schönhuth, Alexander. “Overlap graph-based generation of haplotigs for diploids and polyploids”. Bioinformatics 35.21 (2019): 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935891
Müller, Robert, and Chauve, Cedric. “HyAsP, a greedy tool for plasmids identification”. Bioinformatics 35.21 (2019): 4436 – 4439.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
Sharifi-Noghabi, Hossein, Zolotareva, Olga, Collins, Colin C., and Ester, Martin. “MOLI: multi-omics late integration with deep neural networks for drug response prediction”. Bioinformatics 35.14 (2019): I501-I509.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
Theorell, Axel, Seiffarth, Johannes, Grünberger, Alexander, and Noeh, Katharina. “When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis”. BIOINFORMATICS 35.7 (2019): 1221-1228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. “Analyzing large scale genomic data on the cloud with Sparkhit”. Bioinformatics 34.9 (2018): 1457-1465.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940797
Brink, Benedikt, Meskas, Justin, and Brinkman, Ryan R. “ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data”. Bioinformatics 34.15 (2018): 2687-2689.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896
Lux, Markus, Brinkman, Ryan Remy, Chauve, Cedric, Laing, Adam, Lorenc, Anna, Abeler-Dörner, Lucie, and Hammer, Barbara. “flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry”. Bioinformatics 34.13 (2018): 2245-2253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Ebler, Jana, Schönhuth, Alexander, and Marschall, Tobias. “Genotyping inversions and tandem duplications”. Bioinformatics 33.24 (2017): 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Thijssen, Bram, Dijkstra, Tjeerd M. H., Heskes, Tom, and Wessels, Lodewyk F. A. “Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates”. Bioinformatics 34.5 (2017): 803-811.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
Dirmeier, Simon, Fuchs, Christiane, Mueller, Nikola S, and Theis, Fabian J. “netReg: network-regularized linear models for biological association studies”. Bioinformatics 34.5 (2017): 896-898.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918707
Beier, Sebastian, Thiel, Thomas, Münch, Thomas, Scholz, Uwe, and Mascher, Martin. “MISA-web: a web server for microsatellite prediction”. Bioinformatics 33.16 (2017): 2583-2585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Gregor, I., Schönhuth, Alexander, and McHardy, A. C. “Snowball: strain aware gene assembly of metagenomes”. Bioinformatics 32.17 (2016): i649-i657.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
Hilker, Rolf, Stadermann, Kai Bernd, Schwengers, Oliver, Anisiforov, Evgeny, Jaenicke, Sebastian, Weisshaar, Bernd, Zimmermann, Tobias, and Goesmann, Alexander. “ReadXplorer 2 - detailed read mapping analysis and visualization from one single source”. Bioinformatics 32.24 (2016): 3702-3708.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, Andreas, Singer, Esther, Woyke, Tanja, and Sczyrba, Alexander. “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”. Bioinformatics 32.14 (2016): 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Helfrich, Stefan, Azzouzi, Charaf E., Probst, Christopher, Seiffarth, Johannes, Grünberger, Alexander, Wiechert, Wolfgang, Kohlheyer, Dietrich, and Nöh, Katharina. “Vizardous: interactive analysis of microbial populations with single cell resolution”. Bioinformatics 31.23 (2015): 3875-3877: btv468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31.18 (2015): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30.16 (2014): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, Nils, Wilhelm, Mathias, Doebbe, Anja, Niehaus, Karsten, and Stoye, Jens. “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”. Bioinformatics 30.7 (2014): 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
Janssen, Stefan, and Giegerich, Robert. “The RNA shapes studio”. Bioinformatics 31.3 (2014): 423-425.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
Marschall, Tobias, Hajirasouliha, Iman, and Schönhuth, Alexander. “MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels”. Bioinformatics 29.24 (2013): 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
Sauthoff, Georg, Mohl, Mathias, Janssen, Stefan, and Giegerich, Robert. “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”. Bioinformatics 29.5 (2013): 551-560.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, Nikolas, Bonte, Anja, Langenkämper, Georg, Niehaus, Karsten, Goesmann, Alexander, and Nattkemper, Tim Wilhelm. “MeltDB 2.0 - Advances of the metabolomics software system”. Bioinformatics 29.19 (2013): 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
Marschall, Tobias, Costa, Ivan G., Canzar, Stefan, Bauer, Markus, Klau, Gunnar W., Schliep, Alexander, and Schönhuth, Alexander. “CLEVER: clique-enumerating variant finder”. Bioinformatics 28.22 (2012): 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Hajirasouliha, Iman, Schönhuth, Alexander, de Juan, David, Valencia, Alfonso, and Sahinalp, S. Cenk. “Mirroring co-evolving trees in the light of their topologies”. Bioinformatics 28.9 (2012): 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | PUB-ID: 2910009
M. Reidys, Christian, W. D. Huang, Fenix, E. Andersen, Jorgen, C. Penner, Robert, F. Stadler, Peter, and Nebel, Markus. “Addendum: topology and prediction of RNA pseudoknots”. Bioinformatics 28.2 (2012): 300.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
Hilker, Rolf, Sickinger, Corinna, Pedersen, Christian N. S., and Stoye, Jens. “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”. Bioinformatics 28.19 (2012): 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
Cox, Anthony J, Bauer, Markus J, Jakobi, Tobias, and Rosone, Giovanna. “Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform”. Bioinformatics 28.11 (2012): 1415-1419.
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling, Jan, Langenkämper, Daniel, Sylvie, Abouna, Michale, Khan, and Nattkemper, Tim Wilhelm. “WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages”. Bioinformatics 28.8 (2012): 1143-1150.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
Hafemeister, Christoph, Costa, Ivan G., Schönhuth, Alexander, and Schliep, Alexander. “Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions”. Bioinformatics 27.7 (2011): 946-952.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2910018
M. Reidys, Christian, W. D. Huang, Fenix, E. Andersen, Jorgen, C. Penner, Robert, F. Stadler, Peter, and Nebel, Markus. “Topology and prediction of RNA pseudoknots”. Bioinformatics 27.8 (2011): 1076--1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
Hazelhurst, Scott, and Lipták, Zsuzsanna. “KABOOM! A new suffix-array based algorithm for clustering expression data”. Bioinformatics 27.24 (2011): 3348-3355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
Huang, Donglin, Huang, Yiling, Bai, Youhuang, Chen, Dijun, Hofestädt, Ralf, Klukas, Cristian, and Chen, Ming. “MyBioNet: interactively visualize, edit and merge biological networks on the Web”. Bioinformatics 27.23 (2011): 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, Jochen, Jakobi, Tobias, Doppmeier, Daniel, Jaenicke, Sebastian, Kalinowski, Jörn, Stoye, Jens, and Goesmann, Alexander. “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”. Bioinformatics 27.10 (2011): 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307115
Dutilh, Bas E., Jurgelenaite, Rasa, Szklarczyk, Radek, van Hijum, Sacha A. F. T., Harhangi, Harry R., Schmid, Markus, de Wild, Bart, Francoijs, Kees-Jan, Stunnenberg, Hendrik G., Strous, Marc, Jetten, Mike S. M., Op den Camp, Huub J. M., and Huynen, Martijn A. “FACIL: Fast and Accurate Genetic Code Inference and Logo”. Bioinformatics 27.14 (2011): 1929-1933.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2094556
Schleif, Frank-Michael, Riemer, T., Boerner, U., Schnapka-Hille, L., and Cross, M. “Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications”. Bioinformatics 27.4 (2011): 524-533.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, Burkhard, Giegerich, Robert, and Goesmann, Alexander. “Conveyor: a workflow engine for bioinformatic analyses”. Bioinformatics 27.7 (2011): 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, Stefan, and Giegerich, Robert. “Faster computation of exact RNA shape probabilities”. Bioinformatics 26.5 (2010): 632-639.
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588556
Husemann, Peter, and Stoye, Jens. “r2cat: Synteny Plots and Comparative Assembly”. Bioinformatics 26.4 (2010): 570-571.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker, Sebastian, Lipták, Zsuzsanna, Pervukhin, Anton, and Letzel, Matthias C. “SIRIUS: decomposing isotope patterns for metabolite identification”. Bioinformatics 25.2 (2009): 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, Michael, Medvedev, Paul, Stoye, Jens, and De La Vega, Francisco M. “A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)”. BIOINFORMATICS 25.21 (2009): 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, Stefan, Neuweger, Heiko, Fraenzel, Benjamin, Lange, Sita, Mertens, Dominik, Troetschel, Christian, Wolters, Dirk, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”. Bioinformatics 25.23 (2009): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590210
Dutilh, Bas E., Huynen, Martijn A., and Strous, Marc. “Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly”. BIOINFORMATICS 25.21 (2009): 2878-2881.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, Nils, and Stoye, Jens. “ChromA: signal-based retention time alignment for chromatography-mass spectrometry data”. Bioinformatics 25.16 (2009): 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, Michael, Homann, Robert, Giegerich, Robert, and Kurtz, Stefan. “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”. Bioinformatics 25.24 (2009): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, Robert, Fleer, David, Giegerich, Robert, and Rehmsmeier, Marc. “mkESA: enhanced suffix array construction tool”. Bioinformatics 25.8 (2009): 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603465
Klinger, Roman, Kolarik, Corinna, Fluck, Juliane, Hofmann-Apitius, Martin, and Friedrich, Christoph M. “Detection of IUPAC and IUPAC-like Chemical Names”. Bioinformatics 24.13 (2008): i268-i276.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, Heiko, Albaum, Stefan, Dondrup, Michael, Persicke, Marcus, Watt, Tony, Niehaus, Karsten, Stoye, Jens, and Goesmann, Alexander. “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”. Bioinformatics 24.23 (2008): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, Sebastian, Lipták, Zsuzsanna, Martin, Marcel, Pervukhin, Anton, and Sudek, Henner. “DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem”. BIOINFORMATICS 24.4 (2008): 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 

Filter und Suchbegriffe

issn=1367-4803

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: mla

Export / Einbettung