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79 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
J.A. Baaijens, et al., “Full-length de novo viral quasispecies assembly through variation graph construction”, Bioinformatics, vol. 35, 2019, pp. 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
B. Yin, et al., “Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype”, Bioinformatics, vol. 35, 2019, pp. i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
J.A. Baaijens and A. Schönhuth, “Overlap graph-based generation of haplotigs for diploids and polyploids”, Bioinformatics, vol. 35, 2019, pp. 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935891
R. Müller and C. Chauve, “HyAsP, a greedy tool for plasmids identification”, Bioinformatics, vol. 35, 2019, pp. 4436 – 4439.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
H. Sharifi-Noghabi, et al., “MOLI: multi-omics late integration with deep neural networks for drug response prediction”, Bioinformatics, vol. 35, 2019, pp. I501-I509.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
A. Theorell, et al., “When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis”, BIOINFORMATICS, vol. 35, 2019, pp. 1221-1228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
L. Huang, J. Krüger, and A. Sczyrba, “Analyzing large scale genomic data on the cloud with Sparkhit”, Bioinformatics, vol. 34, 2018, pp. 1457-1465.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940797
B. Brink, J. Meskas, and R.R. Brinkman, “ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data”, Bioinformatics, vol. 34, 2018, pp. 2687-2689.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896
M. Lux, et al., “flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry”, Bioinformatics, vol. 34, 2018, pp. 2245-2253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
J. Ebler, A. Schönhuth, and T. Marschall, “Genotyping inversions and tandem duplications”, Bioinformatics, vol. 33, 2017, pp. 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
B. Thijssen, et al., “Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates”, Bioinformatics, vol. 34, 2017, pp. 803-811.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
S. Dirmeier, et al., “netReg: network-regularized linear models for biological association studies”, Bioinformatics, vol. 34, 2017, pp. 896-898.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918707
S. Beier, et al., “MISA-web: a web server for microsatellite prediction”, Bioinformatics, vol. 33, 2017, pp. 2583-2585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
I. Gregor, A. Schönhuth, and A.C. McHardy, “Snowball: strain aware gene assembly of metagenomes”, Bioinformatics, vol. 32, 2016, pp. i649-i657.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
R. Hilker, et al., “ReadXplorer 2 - detailed read mapping analysis and visualization from one single source”, Bioinformatics, vol. 32, 2016, pp. 3702-3708.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
A. Bremges, et al., “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”, Bioinformatics, vol. 32, 2016, pp. 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
S. Helfrich, et al., “Vizardous: interactive analysis of microbial populations with single cell resolution”, Bioinformatics, vol. 31, 2015, pp. 3875-3877, : btv468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
R. Wittler, et al., “Repeat- and error-aware comparison of deletions”, Bioinformatics, vol. 31, 2015, pp. 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, et al., “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, vol. 30, 2014, pp. 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, et al., “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, vol. 30, 2014, pp. 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
S. Janssen and R. Giegerich, “The RNA shapes studio”, Bioinformatics, vol. 31, 2014, pp. 423-425.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
T. Marschall, I. Hajirasouliha, and A. Schönhuth, “MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels”, Bioinformatics, vol. 29, 2013, pp. 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
G. Sauthoff, et al., “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”, Bioinformatics, vol. 29, 2013, pp. 551-560.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, et al., “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, vol. 29, 2013, pp. 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
T. Marschall, et al., “CLEVER: clique-enumerating variant finder”, Bioinformatics, vol. 28, 2012, pp. 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
I. Hajirasouliha, et al., “Mirroring co-evolving trees in the light of their topologies”, Bioinformatics, vol. 28, 2012, pp. 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | PUB-ID: 2910009
C. M. Reidys, et al., “Addendum: topology and prediction of RNA pseudoknots”, Bioinformatics, vol. 28, 2012, pp. 300.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, et al., “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, vol. 28, 2012, pp. 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
A.J. Cox, et al., “Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform”, Bioinformatics, vol. 28, 2012, pp. 1415-1419.
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
J. Kölling, et al., “WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages”, Bioinformatics, vol. 28, 2012, pp. 1143-1150.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
C. Hafemeister, et al., “Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions”, Bioinformatics, vol. 27, 2011, pp. 946-952.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2910018
C. M. Reidys, et al., “Topology and prediction of RNA pseudoknots”, Bioinformatics, vol. 27, 2011, pp. 1076--1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
S. Hazelhurst and Z. Lipták, “KABOOM! A new suffix-array based algorithm for clustering expression data”, Bioinformatics, vol. 27, 2011, pp. 3348-3355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
D. Huang, et al., “MyBioNet: interactively visualize, edit and merge biological networks on the Web”, Bioinformatics, vol. 27, 2011, pp. 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, et al., “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, vol. 27, 2011, pp. 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307115
B.E. Dutilh, et al., “FACIL: Fast and Accurate Genetic Code Inference and Logo”, Bioinformatics, vol. 27, 2011, pp. 1929-1933.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2094556
F.-M. Schleif, et al., “Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications”, Bioinformatics, vol. 27, 2011, pp. 524-533.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, vol. 27, 2011, pp. 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
S. Janssen and R. Giegerich, “Faster computation of exact RNA shape probabilities”, Bioinformatics, vol. 26, 2010, pp. 632-639.
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588556
P. Husemann and J. Stoye, “r2cat: Synteny Plots and Comparative Assembly”, Bioinformatics, vol. 26, 2010, pp. 570-571.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
S. Böcker, et al., “SIRIUS: decomposing isotope patterns for metabolite identification”, Bioinformatics, vol. 25, 2009, pp. 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
M. Brudno, et al., “A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)”, BIOINFORMATICS, vol. 25, 2009, pp. 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, et al., “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, vol. 25, 2009, pp. 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590210
B.E. Dutilh, M.A. Huynen, and M. Strous, “Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly”, BIOINFORMATICS, vol. 25, 2009, pp. 2878-2881.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
N. Hoffmann and J. Stoye, “ChromA: signal-based retention time alignment for chromatography-mass spectrometry data”, Bioinformatics, vol. 25, 2009, pp. 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
M. Beckstette, et al., “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”, Bioinformatics, vol. 25, 2009, pp. 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
R. Homann, et al., “mkESA: enhanced suffix array construction tool”, Bioinformatics, vol. 25, 2009, pp. 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603465
R. Klinger, et al., “Detection of IUPAC and IUPAC-like Chemical Names”, Bioinformatics, vol. 24, 2008, pp. i268-i276.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
H. Neuweger, et al., “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, vol. 24, 2008, pp. 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
S. Boecker, et al., “DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem”, BIOINFORMATICS, vol. 24, 2008, pp. 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 

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