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79 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Baaijens, J.A., et al., 2019. Full-length de novo viral quasispecies assembly through variation graph construction. Bioinformatics, 35(24), p 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Yin, B., et al., 2019. Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype. Bioinformatics, 35(14), p i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Baaijens, J.A., & Schönhuth, A., 2019. Overlap graph-based generation of haplotigs for diploids and polyploids. Bioinformatics, 35(21), p 4281-4289.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935891
Müller, R., & Chauve, C., 2019. HyAsP, a greedy tool for plasmids identification. Bioinformatics, 35(21), p 4436 – 4439.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
Sharifi-Noghabi, H., et al., 2019. MOLI: multi-omics late integration with deep neural networks for drug response prediction. Bioinformatics, 35(14), p I501-I509.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
Theorell, A., et al., 2019. When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis. BIOINFORMATICS, 35(7), p 1221-1228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, L., Krüger, J., & Sczyrba, A., 2018. Analyzing large scale genomic data on the cloud with Sparkhit. Bioinformatics, 34(9), p 1457-1465.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940797
Brink, B., Meskas, J., & Brinkman, R.R., 2018. ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data. Bioinformatics, 34(15), p 2687-2689.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896
Lux, M., et al., 2018. flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry. Bioinformatics, 34(13), p 2245-2253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Ebler, J., Schönhuth, A., & Marschall, T., 2017. Genotyping inversions and tandem duplications. Bioinformatics, 33(24), p 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Thijssen, B., et al., 2017. Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates. Bioinformatics, 34(5), p 803-811.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
Dirmeier, S., et al., 2017. netReg: network-regularized linear models for biological association studies. Bioinformatics, 34(5), p 896-898.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918707
Beier, S., et al., 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics, 33(16), p 2583-2585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Gregor, I., Schönhuth, A., & McHardy, A.C., 2016. Snowball: strain aware gene assembly of metagenomes. Bioinformatics, 32(17), p i649-i657.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
Hilker, R., et al., 2016. ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. Bioinformatics, 32(24), p 3702-3708.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, A., et al., 2016. MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics, 32(14), p 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Helfrich, S., et al., 2015. Vizardous: interactive analysis of microbial populations with single cell resolution. Bioinformatics, 31(23), p 3875-3877: btv468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Wittler, R., et al., 2015. Repeat- and error-aware comparison of deletions. Bioinformatics, 31(18), p 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., et al., 2014. ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics, 30(16), p 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, N., et al., 2014. BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics, 30(7), p 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
Janssen, S., & Giegerich, R., 2014. The RNA shapes studio. Bioinformatics, 31(3), p 423-425.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
Marschall, T., Hajirasouliha, I., & Schönhuth, A., 2013. MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinformatics, 29(24), p 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
Sauthoff, G., et al., 2013. Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics, 29(5), p 551-560.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., et al., 2013. MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics, 29(19), p 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
Marschall, T., et al., 2012. CLEVER: clique-enumerating variant finder. Bioinformatics, 28(22), p 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Hajirasouliha, I., et al., 2012. Mirroring co-evolving trees in the light of their topologies. Bioinformatics, 28(9), p 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | PUB-ID: 2910009
M. Reidys, C., et al., 2012. Addendum: topology and prediction of RNA pseudoknots. Bioinformatics, 28(2), p 300.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
Hilker, R., et al., 2012. UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics, 28(19), p 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
Cox, A.J., et al., 2012. Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinformatics, 28(11), p 1415-1419.
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling, J., et al., 2012. WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics, 28(8), p 1143-1150.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
Hafemeister, C., et al., 2011. Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinformatics, 27(7), p 946-952.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2910018
M. Reidys, C., et al., 2011. Topology and prediction of RNA pseudoknots. Bioinformatics, 27(8), p 1076--1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
Hazelhurst, S., & Lipták, Z., 2011. KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics, 27(24), p 3348-3355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
Huang, D., et al., 2011. MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinformatics, 27(23), p 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., et al., 2011. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), p 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307115
Dutilh, B.E., et al., 2011. FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinformatics, 27(14), p 1929-1933.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2094556
Schleif, F.-M., et al., 2011. Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics, 27(4), p 524-533.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., & Goesmann, A., 2011. Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), p 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, S., & Giegerich, R., 2010. Faster computation of exact RNA shape probabilities. Bioinformatics, 26(5), p 632-639.
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588556
Husemann, P., & Stoye, J., 2010. r2cat: Synteny Plots and Comparative Assembly. Bioinformatics, 26(4), p 570-571.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker, S., et al., 2009. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics, 25(2), p 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, M., et al., 2009. A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS, 25(21), p 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., et al., 2009. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), p 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590210
Dutilh, B.E., Huynen, M.A., & Strous, M., 2009. Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. BIOINFORMATICS, 25(21), p 2878-2881.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, N., & Stoye, J., 2009. ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics, 25(16), p 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, M., et al., 2009. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics, 25(24), p 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, R., et al., 2009. mkESA: enhanced suffix array construction tool. Bioinformatics, 25(8), p 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603465
Klinger, R., et al., 2008. Detection of IUPAC and IUPAC-like Chemical Names. Bioinformatics, 24(13), p i268-i276.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., et al., 2008. MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), p 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, S., et al., 2008. DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS, 24(4), p 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 

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