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79 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Baaijens, Jasmijn A, Van der Roest, Bastiaan, Köster, Johannes, Stougie, Leen, and Schönhuth, Alexander. 2019. “Full-length de novo viral quasispecies assembly through variation graph construction”. Bioinformatics 35 (24): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Yin, Bojian, Balvert, Marleen, van der Spek, Rick A A, Dutilh, Bas E, Bohté, Sander, Veldink, Jan, and Schönhuth, Alexander. 2019. “Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype”. Bioinformatics 35 (14): i538-i547.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Baaijens, Jasmijn A, and Schönhuth, Alexander. 2019. “Overlap graph-based generation of haplotigs for diploids and polyploids”. Bioinformatics 35 (21): 4281-4289.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935891
Müller, Robert, and Chauve, Cedric. 2019. “HyAsP, a greedy tool for plasmids identification”. Bioinformatics 35 (21): 4436 – 4439.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
Sharifi-Noghabi, Hossein, Zolotareva, Olga, Collins, Colin C., and Ester, Martin. 2019. “MOLI: multi-omics late integration with deep neural networks for drug response prediction”, Bioinformatics, 35 (14): I501-I509.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
Theorell, Axel, Seiffarth, Johannes, Grünberger, Alexander, and Noeh, Katharina. 2019. “When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis”. BIOINFORMATICS 35 (7): 1221-1228.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. 2018. “Analyzing large scale genomic data on the cloud with Sparkhit”. Bioinformatics 34 (9): 1457-1465.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940797
Brink, Benedikt, Meskas, Justin, and Brinkman, Ryan R. 2018. “ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data”. Bioinformatics 34 (15): 2687-2689.
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2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896
Lux, Markus, Brinkman, Ryan Remy, Chauve, Cedric, Laing, Adam, Lorenc, Anna, Abeler-Dörner, Lucie, and Hammer, Barbara. 2018. “flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry”. Bioinformatics 34 (13): 2245-2253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Ebler, Jana, Schönhuth, Alexander, and Marschall, Tobias. 2017. “Genotyping inversions and tandem duplications”. Bioinformatics 33 (24): 4015-4023.
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2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Thijssen, Bram, Dijkstra, Tjeerd M. H., Heskes, Tom, and Wessels, Lodewyk F. A. 2017. “Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates”. Bioinformatics 34 (5): 803-811.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
Dirmeier, Simon, Fuchs, Christiane, Mueller, Nikola S, and Theis, Fabian J. 2017. “netReg: network-regularized linear models for biological association studies”. Bioinformatics 34 (5): 896-898.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918707
Beier, Sebastian, Thiel, Thomas, Münch, Thomas, Scholz, Uwe, and Mascher, Martin. 2017. “MISA-web: a web server for microsatellite prediction”. Bioinformatics 33 (16): 2583-2585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Gregor, I., Schönhuth, Alexander, and McHardy, A. C. 2016. “Snowball: strain aware gene assembly of metagenomes”. Bioinformatics 32 (17): i649-i657.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
Hilker, Rolf, Stadermann, Kai Bernd, Schwengers, Oliver, Anisiforov, Evgeny, Jaenicke, Sebastian, Weisshaar, Bernd, Zimmermann, Tobias, and Goesmann, Alexander. 2016. “ReadXplorer 2 - detailed read mapping analysis and visualization from one single source”. Bioinformatics 32 (24): 3702-3708.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, Andreas, Singer, Esther, Woyke, Tanja, and Sczyrba, Alexander. 2016. “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”. Bioinformatics 32 (14): 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Helfrich, Stefan, Azzouzi, Charaf E., Probst, Christopher, Seiffarth, Johannes, Grünberger, Alexander, Wiechert, Wolfgang, Kohlheyer, Dietrich, and Nöh, Katharina. 2015. “Vizardous: interactive analysis of microbial populations with single cell resolution”. Bioinformatics 31 (23): 3875-3877: btv468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. 2015. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31 (18): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. 2014. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30 (16): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, Nils, Wilhelm, Mathias, Doebbe, Anja, Niehaus, Karsten, and Stoye, Jens. 2014. “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”. Bioinformatics 30 (7): 988-995.
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