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67 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Baaijens, Jasmijn A, Van der Roest, Bastiaan, Köster, Johannes, Stougie, Leen, and Schönhuth, Alexander. “Full-length de novo viral quasispecies assembly through variation graph construction”. Bioinformatics 35.24 (2019): 5086-5094.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Yin, Bojian, Balvert, Marleen, van der Spek, Rick A A, Dutilh, Bas E, Bohté, Sander, Veldink, Jan, and Schönhuth, Alexander. “Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype”. Bioinformatics 35.14 (2019): i538-i547.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Baaijens, Jasmijn A, and Schönhuth, Alexander. “Overlap graph-based generation of haplotigs for diploids and polyploids”. Bioinformatics 35.21 (2019): 4281-4289.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
Sharifi-Noghabi, Hossein, Zolotareva, Olga, Collins, Colin C., and Ester, Martin. “MOLI: multi-omics late integration with deep neural networks for drug response prediction”. Bioinformatics 35.14 (2019): I501-I509.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
Theorell, Axel, Seiffarth, Johannes, Grünberger, Alexander, and Noeh, Katharina. “When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis”. BIOINFORMATICS 35.7 (2019): 1221-1228.
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2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896 OA
Lux, Markus, Brinkman, Ryan Remy, Chauve, Cedric, Laing, Adam, Lorenc, Anna, Abeler-Dörner, Lucie, and Hammer, Barbara. “flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry”. Bioinformatics 34.13 (2018): 2245-2253.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Ebler, Jana, Schönhuth, Alexander, and Marschall, Tobias. “Genotyping inversions and tandem duplications”. Bioinformatics 33.24 (2017): 4015-4023.
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2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Thijssen, Bram, Dijkstra, Tjeerd M. H., Heskes, Tom, and Wessels, Lodewyk F. A. “Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates”. Bioinformatics 34.5 (2017): 803-811.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
Dirmeier, Simon, Fuchs, Christiane, Mueller, Nikola S, and Theis, Fabian J. “netReg: network-regularized linear models for biological association studies”. Bioinformatics 34.5 (2017): 896-898.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Gregor, I., Schönhuth, Alexander, and McHardy, A. C. “Snowball: strain aware gene assembly of metagenomes”. Bioinformatics 32.17 (2016): i649-i657.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Helfrich, Stefan, Azzouzi, Charaf E., Probst, Christopher, Seiffarth, Johannes, Grünberger, Alexander, Wiechert, Wolfgang, Kohlheyer, Dietrich, and Nöh, Katharina. “Vizardous: interactive analysis of microbial populations with single cell resolution”. Bioinformatics 31.23 (2015): 3875-3877: btv468.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30.16 (2014): 2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, Nils, Wilhelm, Mathias, Doebbe, Anja, Niehaus, Karsten, and Stoye, Jens. “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”. Bioinformatics 30.7 (2014): 988-995.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
Janssen, Stefan, and Giegerich, Robert. “The RNA shapes studio”. Bioinformatics 31.3 (2014): 423-425.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
Marschall, Tobias, Hajirasouliha, Iman, and Schönhuth, Alexander. “MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels”. Bioinformatics 29.24 (2013): 3143-3150.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
Sauthoff, Georg, Mohl, Mathias, Janssen, Stefan, and Giegerich, Robert. “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”. Bioinformatics 29.5 (2013): 551-560.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, Nikolas, Bonte, Anja, Langenkämper, Georg, Niehaus, Karsten, Goesmann, Alexander, and Nattkemper, Tim Wilhelm. “MeltDB 2.0 - Advances of the metabolomics software system”. Bioinformatics 29.19 (2013): 2452-2459.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
Marschall, Tobias, Costa, Ivan G., Canzar, Stefan, Bauer, Markus, Klau, Gunnar W., Schliep, Alexander, and Schönhuth, Alexander. “CLEVER: clique-enumerating variant finder”. Bioinformatics 28.22 (2012): 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Hajirasouliha, Iman, Schönhuth, Alexander, de Juan, David, Valencia, Alfonso, and Sahinalp, S. Cenk. “Mirroring co-evolving trees in the light of their topologies”. Bioinformatics 28.9 (2012): 1202-1208.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
Hilker, Rolf, Sickinger, Corinna, Pedersen, Christian N. S., and Stoye, Jens. “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”. Bioinformatics 28.19 (2012): 2509-2511.
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