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67 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens, Jasmijn A, Full-length de novo viral quasispecies assembly through variation graph construction. Bioinformatics 35 (24). , 2019
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype
Yin, Bojian, Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype. Bioinformatics 35 (14). , 2019
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Overlap graph-based generation of haplotigs for diploids and polyploids
Baaijens, Jasmijn A, Overlap graph-based generation of haplotigs for diploids and polyploids. Bioinformatics 35 (21). , 2019
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
MOLI: multi-omics late integration with deep neural networks for drug response prediction
Sharifi-Noghabi, Hossein, MOLI: multi-omics late integration with deep neural networks for drug response prediction. 35 (14). Oxford, 2019
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis
Theorell, Axel, When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis. BIOINFORMATICS 35 (7). , 2019
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896 OA
flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry
Lux, Markus, flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry. Bioinformatics 34 (13). , 2018
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Genotyping inversions and tandem duplications
Ebler, Jana, Genotyping inversions and tandem duplications. Bioinformatics 33 (24). , 2017
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates
Thijssen, Bram, Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates. Bioinformatics 34 (5). , 2017
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
netReg: network-regularized linear models for biological association studies
Dirmeier, Simon, netReg: network-regularized linear models for biological association studies. Bioinformatics 34 (5). , 2017
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Snowball: strain aware gene assembly of metagenomes
Gregor, I., Snowball: strain aware gene assembly of metagenomes. Bioinformatics 32 (17). , 2016
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Vizardous: interactive analysis of microbial populations with single cell resolution
Helfrich, Stefan, Vizardous: interactive analysis of microbial populations with single cell resolution. Bioinformatics 31 (23). , 2015
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
ReadXplorer - Visualization and Analysis of Mapped Sequences
Hilker, Rolf, ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30 (16). , 2014
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry
Hoffmann, Nils, BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics 30 (7). , 2014
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
The RNA shapes studio
Janssen, Stefan, The RNA shapes studio. Bioinformatics 31 (3). , 2014
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
Marschall, Tobias, MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinformatics 29 (24). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis
Sauthoff, Georg, Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics 29 (5). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
MeltDB 2.0 - Advances of the metabolomics software system
Kessler, Nikolas, MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29 (19). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
CLEVER: clique-enumerating variant finder
Marschall, Tobias, CLEVER: clique-enumerating variant finder. Bioinformatics 28 (22). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Mirroring co-evolving trees in the light of their topologies
Hajirasouliha, Iman, Mirroring co-evolving trees in the light of their topologies. Bioinformatics 28 (9). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ
Hilker, Rolf, UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics 28 (19). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
Cox, Anthony J, Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinformatics 28 (11). , 2012
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages
Kölling, Jan, WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics 28 (8). , 2012
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions
Hafemeister, Christoph, Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinformatics 27 (7). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
KABOOM! A new suffix-array based algorithm for clustering expression data
Hazelhurst, Scott, KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics 27 (24). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
MyBioNet: interactively visualize, edit and merge biological networks on the Web
Huang, Donglin, MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinformatics 27 (23). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
Blom, Jochen, Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27 (10). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307115
FACIL: Fast and Accurate Genetic Code Inference and Logo
Dutilh, Bas E., FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinformatics 27 (14). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2094556
Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications
Schleif, Frank-Michael, Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. Bioinformatics 27 (4). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Conveyor: a workflow engine for bioinformatic analyses
Linke, Burkhard, Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27 (7). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Faster computation of exact RNA shape probabilities
Janssen, Stefan, Faster computation of exact RNA shape probabilities. Bioinformatics 26 (5). , 2010
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588556
r2cat: Synteny Plots and Comparative Assembly
Husemann, Peter, r2cat: Synteny Plots and Comparative Assembly. Bioinformatics 26 (4). , 2010
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
SIRIUS: decomposing isotope patterns for metabolite identification
Böcker, Sebastian, SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics 25 (2). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)
Brudno, Michael, A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS 25 (21). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum, Stefan, Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25 (23). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590210
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly
Dutilh, Bas E., Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. BIOINFORMATICS 25 (21). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
ChromA: signal-based retention time alignment for chromatography-mass spectrometry data
Hoffmann, Nils, ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics 25 (16). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Beckstette, Michael, Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25 (24). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
mkESA: enhanced suffix array construction tool
Homann, Robert, mkESA: enhanced suffix array construction tool. Bioinformatics 25 (8). , 2009
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2603465
Detection of IUPAC and IUPAC-like Chemical Names
Klinger, Roman, Detection of IUPAC and IUPAC-like Chemical Names. Bioinformatics 24 (13). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger, Heiko, MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (23). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem
Boecker, Sebastian, DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS 24 (4). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
An overview of the wcd EST clustering tool
Hazelhurst, Scott, An overview of the wcd EST clustering tool. BIOINFORMATICS 24 (13). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin, Christian, Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24 (14). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594917
Compressed suffix tree - a basis for genome-scale sequence analysis
Välimäki, Niko, Compressed suffix tree - a basis for genome-scale sequence analysis. BIOINFORMATICS 23 (5). , 2007
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499691
Graph-based analysis and visualization of experimental results with ONDEX
Köhler, Jacob, Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics 22 (11). , 2006
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
Gerlach, Wolfgang, GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.. Bioinformatics 22 (6). , 2006
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599943
Panta rhei (QAlign2): an open graphical environment for sequence analysis
Sammeth, Michael, Panta rhei (QAlign2): an open graphical environment for sequence analysis. BIOINFORMATICS 22 (7). , 2006
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421
RNAshapes: an integrated RNA analysis package based on abstract shapes
Steffen, Peter, RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 22 (4). , 2006
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Finding novel genes in bacterial communities isolated from the environment
Krause, Lutz, Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS 22 (14). , 2006
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela, BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21 (7). , 2005
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604896
Database driven test case generation for protein-protein docking
Zöllner, Frank, Database driven test case generation for protein-protein docking. Bioinformatics 21 (5). , 2005
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
Development of joint application strategies for two microbial gene finders
McHardy, A. C., Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20 (10). , 2004
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822
GenAlyzer: interactive visualization of sequence similarities between entire genomes
Choudhuri, Jomuna V, GenAlyzer: interactive visualization of sequence similarities between entire genomes. BIOINFORMATICS 20 (12). , 2004
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419
Evaluating the predictability of conformational switching in RNA
Voss, Björn, Evaluating the predictability of conformational switching in RNA. Bioinformatics 20 (10). , 2004
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610687
GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana
Li, Yong, GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana. Bioinformatics 19 (11). , 2003
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609403 OA
Divide-and-conquer multiple alignment with segment-based constraints
Sammeth, Michael, Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS 19 (Suppl 2). , 2003
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610503 OA
QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
Sammeth, Michael, QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. BIOINFORMATICS 19 (12). , 2003
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612470
AltAVisT: Comparing alternative multiple sequence alignments
Morgenstern, B, AltAVisT: Comparing alternative multiple sequence alignments. BIOINFORMATICS 19 (3). , 2003
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610494
AGenDA: homology-based gene prediction
Taher, L, AGenDA: homology-based gene prediction. BIOINFORMATICS 19 (12). , 2003
PUB | DOI | WoS | PubMed | Europe PMC
 
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
PathFinder: reconstruction and dynamic visualization of metabolic pathways
Goesmann, Alexander, PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18 (1). , 2002
PUB | DOI | WoS | PubMed | Europe PMC
 
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
Common intervals and sorting by reversals: a marriage of necessity
Bergeron, Anne, Common intervals and sorting by reversals: a marriage of necessity. Bioinformatics 18 (Suppl 2). , 2002
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572
Minimum conflict: a divide-and-conquer approach to phylogeny estimation
Fuellen, Georg, Minimum conflict: a divide-and-conquer approach to phylogeny estimation. BIOINFORMATICS 17 (12). , 2001
PUB | DOI | WoS | PubMed | Europe PMC
 
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574
A systematic approach to dynamic programming in bioinformatics
Giegerich, Robert, A systematic approach to dynamic programming in bioinformatics. BIOINFORMATICS 16 (8). , 2000
PUB | DOI | WoS | PubMed | Europe PMC
 
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773341 OA
An iterative method for faster sum-of-pairs multiple sequence alignment
Reinert, Knut, An iterative method for faster sum-of-pairs multiple sequence alignment. Bioinformatics 16 (9). , 2000
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374
RNA movies: visualizing RNA secondary structure spaces
Evers, Dirk J., RNA movies: visualizing RNA secondary structure spaces. BIOINFORMATICS 15 (1). , 1999
PUB | DOI | WoS | PubMed | Europe PMC
 
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625402 OA
Rose: generating sequence families
Stoye, Jens, Rose: generating sequence families. BIOINFORMATICS 14 (2). , 1998
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625406
Estimation and filtering of potential protein-protein docking positions
Ackermann, Friedrich, Estimation and filtering of potential protein-protein docking positions. Bioinformatics 14 (2). , 1998
PUB | DOI | WoS | PubMed | Europe PMC
 

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