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67 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2019)
Bioinformatics 35(24): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype
Yin B, Balvert M, van der Spek RAA, Dutilh BE, Bohté S, Veldink J, Schönhuth A (2019)
Bioinformatics 35(14): i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Overlap graph-based generation of haplotigs for diploids and polyploids
Baaijens JA, Schönhuth A (2019)
Bioinformatics 35(21): 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936939
MOLI: multi-omics late integration with deep neural networks for drug response prediction
Sharifi-Noghabi H, Zolotareva O, Collins CC, Ester M (2019)
Bioinformatics 35(14): I501-I509.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935584
When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis
Theorell A, Seiffarth J, Grünberger A, Noeh K (2019)
BIOINFORMATICS 35(7): 1221-1228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2917896
flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry
Lux M, Brinkman RR, Chauve C, Laing A, Lorenc A, Abeler-Dörner L, Hammer B (2018)
Bioinformatics 34(13): 2245-2253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Genotyping inversions and tandem duplications
Ebler J, Schönhuth A, Marschall T (2017)
Bioinformatics 33(24): 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2918897
Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates
Thijssen B, Dijkstra TMH, Heskes T, Wessels LFA (2017)
Bioinformatics 34(5): 803-811.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933892
netReg: network-regularized linear models for biological association studies
Dirmeier S, Fuchs C, Mueller NS, Theis FJ (2017)
Bioinformatics 34(5): 896-898.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Snowball: strain aware gene assembly of metagenomes
Gregor I, Schönhuth A, McHardy AC (2016)
Bioinformatics 32(17): i649-i657.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912555
Vizardous: interactive analysis of microbial populations with single cell resolution
Helfrich S, Azzouzi CE, Probst C, Seiffarth J, Grünberger A, Wiechert W, Kohlheyer D, Nöh K (2015)
Bioinformatics 31(23): 3875-3877: btv468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
ReadXplorer - Visualization and Analysis of Mapped Sequences
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
Bioinformatics 30(16): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry
Hoffmann N, Wilhelm M, Doebbe A, Niehaus K, Stoye J (2014)
Bioinformatics 30(7): 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
The RNA shapes studio
Janssen S, Giegerich R (2014)
Bioinformatics 31(3): 423-425.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
Marschall T, Hajirasouliha I, Schönhuth A (2013)
Bioinformatics 29(24): 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis
Sauthoff G, Mohl M, Janssen S, Giegerich R (2013)
Bioinformatics 29(5): 551-560.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
MeltDB 2.0 - Advances of the metabolomics software system
Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)
Bioinformatics 29(19): 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
CLEVER: clique-enumerating variant finder
Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A (2012)
Bioinformatics 28(22): 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Mirroring co-evolving trees in the light of their topologies
Hajirasouliha I, Schönhuth A, de Juan D, Valencia A, Sahinalp SC (2012)
Bioinformatics 28(9): 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ
Hilker R, Sickinger C, Pedersen CNS, Stoye J (2012)
Bioinformatics 28(19): 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 

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