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55 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult, F.; Lee, T. N.; Albersmeier, A.; Rauch, B.; Blumenkamp, P.; van der Does, C.; Goesmann, A.; Kalinowski, J.; Albers, S. - V.; Siebers, B. (2018): Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response NUCLEIC ACIDS RESEARCH,46:(14): 7179-7192.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920779 OA
Baier, T.; Wichmann, J.; Kruse, O.; Lauersen, K. J. (2018): Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii Nucleic Acids Research,46:(13): 6909-6919.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S.; Jahn, K.; Wehner, S.; Kuchenbecker, L.; Marz, M.; Stoye, J.; Böcker, S. (2016): Finding approximate gene clusters with GECKO 3 Nucleic Acids Research,44:(20): 9600-9610.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
Köster, T.; Meyer, K.; Weinholdt, C.; Smith, L. M.; Lummer, M.; Speth, C.; Grosse, I.; Weigel, D.; Staiger, D. (2014): Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis Nucleic acids research,42:(15): 9925-9936.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934072
Schneider, K.; Fuchs, C.; Dobay, A.; Rottach, A.; Qin, W.; Wolf, P.; Álvarez-Castro, J. M.; Nalaskowski, M. M.; Kremmer, E.; Schmid, V.; Leonhardt, H.; Schermelleh, L. (2013): Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling Nucleic Acids Research,41:(9): 4860-4876.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579031
Wobbe, L.; Nixon, P. J. (2013): The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii Nucleic Acids Research,41:(13): 6553-6567.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448791 OA
Kleinbölting, N.; Huep, G.; Klotgen, A.; Viehöver, P.; Weisshaar, B. (2012): GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database Nucleic Acids Research,40:(D1): D1211-D1215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
Streitner, C.; Köster, T.; Simpson, C. G.; Shaw, P.; Danisman, S.; Brown, J. W. S.; Staiger, D. (2012): An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana Nucleic acids research,40:(22): 11240-11255.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471873
Pauling, J.; Rottger, R.; Tauch, A.; Azevedo, V.; Baumbach, J. (2012): CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands Nucleic Acids Research,40:(D1): D610-D614.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528126
Mönke, G.; Seifert, M.; Keilwagen, J.; Mohr, M.; Grosse, I.; Hähnel, U.; Junker, A.; Weisshaar, B.; Conrad, U.; Bäumlein, H.; Altschmied, L. (2012): Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon Nucleic Acids Research,40:(17): 8240-8254.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2523617
Lobo, F. P.; Rodrigues, M. R.; Rodrigues, G. O. L.; Hilario, H. O.; Souza, R. A.; Tauch, A.; Miyoshi, A.; Franco, G. C.; Azevedo, V.; Franco, G. R. (2012): KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa Nucleic Acids Research,40:(W1): W491-W497.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2298170 OA
Gerlach, W.; Stoye, J. (2011): Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res,39:(14): e91.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1987138
Grewe, F.; Herres, S.; Viehöver, P.; Polsakiewicz, M.; Weisshaar, B.; Knoop, V. (2011): A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii Nucleic Acids Research,39:(7): 2890-2902.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590766
Grewe, F.; Viehöver, P.; Weisshaar, B.; Knoop, V. (2009): A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii Nucleic Acids Research,37:(15): 5093-5104.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk, J.; Kohl, T. A.; Goesmann, A.; Kalinowski, J.; Baumbach, J. (2009): From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet NUCLEIC ACIDS RESEARCH,37:(14): e97.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539 OA
Alves jun., L.; Niemeier, S.; Hauenschild, A.; Rehmsmeier, M.; Merkle, T. (2009): Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana Nucleic Acids Research,37:(12): 4010-4021.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783375 OA
Schöning, J. C.; Streitner, C.; Meyer, I. M.; Gao, Y.; Staiger, D. (2008): Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis Nucleic Acids Research,36:(22): 6977-6987.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S.; Gilbert, D.; Tauch, A.; Stoye, J.; Goesmann, A. (2008): Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms NUCLEIC ACIDS RESEARCH,36:(Web Server): W433-W437.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
Theis, C.; Reeder, J.; Giegerich, R. (2008): KnotInFrame: prediction of –1 ribosomal frameshift events Nucleic Acids Research,36:(18): 6013-6020.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L.; Diaz, N. N.; Goesmann, A.; Kelley, S.; Nattkemper, T. W.; Rohwer, F.; Edwards, R. A.; Stoye, J. (2008): Phylogenetic classification of short environmental DNA fragments Nucleic Acids Research,36:(7): 2230-2239.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596131 OA
Li, Y.; Rosso, M. G.; Viehöver, P.; Weisshaar, B. (2007): GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions Nucleic Acids Research,35:(Database): D874-D878.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
Reeder, J.; Steffen, P.; Giegerich, R. (2007): pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows NUCLEIC ACIDS RESEARCH,35:(Web Server): W320-W324.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587979 OA
Kaiser, A.; Krüger, J.; Evers, D. J. (2007): RNA Movies 2: sequential animation of RNA secondary structures NUCLEIC ACIDS RESEARCH,35:(Web Server): W330-W334.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L.; McHardy, A. C.; Nattkemper, T. W.; Pühler, A.; Stoye, J.; Meyer, F. (2007): GISMO - gene identification using a support vector machine for ORF classification Nucleic Acids Research,35:(2): 540-549.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383467
Krüger, J.; Rehmsmeier, M. (2006): RNAhybrid: microRNA target prediction easy, fast, and flexible Nucleic Acids Research,34:(Web Server): W451-W454.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773878 OA
Krüger, J.; Rehmsmeier, M. (2006): RNAhybrid: microRNA target prediction easy, fast and flexible Nucleic Acids Research,34:(Web Server): W451-W454.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773848 OA
Kim, J.; Doose, S.; Neuweiler, H.; Sauer, M. (2006): The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy Nucleic Acids Research,34:(9): 2516-2527.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773904 OA
Marme, N.; Friedrich, A.; Müller, M.; Nolte, O.; Wolfrum, J.; Hoheisel, J. D.; Sauer, M.; Knemeyer, J. - P. (2006): Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy Nucleic Acids Research,34:(13): e90.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773916 OA
Fiedler, T.; Rehmsmeier, M. (2006): jPREdictor: a versatile tool for the prediction of cis-regulatory elements Nucleic Acids Research,34:(Web Server): W546-W550.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
Röpcke, S.; Grossmann, S.; Rahmann, S.; Vingron, M. (2005): T-Reg Comparator: an analysis tool for the comparison of position weight matrices Nucleic Acids Research,33:(Web Server): W438-W441.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
Ehrich, M.; Böcker, S.; Boom van den, D. (2005): Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS Nucleic Acids Res.,33:(4): e38.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
Overbeek, R.; Begley, T.; Butler, R. M.; Choudhuri, J. V.; Chuang, H. - Y.; Cohoon, M.; Crécy-Lagard, V. de; Diaz, N. N.; Disz, T.; Edwards, R.; Fonstein, M.; Frank, E. D.; Gerdes, S.; Glass, E. M.; Goesmann, A.; Hanson, A.; Iwata-Reuyl, D.; Jensen, R.; Jamshidi, N.; Krause, L.; Kubal, M.; Larsen, N.; Linke, B.; McHardy, A. C.; Meyer, F.; Neuweger, H.; Olsen, G.; Olson, R.; Osterman, A.; Portnoy, V.; Pusch, G. D.; Rodionov, D. A.; Rückert, C.; Steiner, J.; Stevens, R.; Thiele, I.; Vassieva, O.; Ye, Y.; Zagnitko, O.; Vonstein, V. (2005): The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes Nucleic Acids Research,33:(17): 5691-5702.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773690 OA
Ehrich, M.; Böcker, S.; Boom, D. van den (2005): Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS Nucleic Acids Research,33:(4): e38.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
Goesmann, A.; Linke, B.; Bartels, D.; Dondrup, M.; Krause, L.; Neuweger, H.; Oehm, S.; Paczian, T.; Wilke, A.; Meyer, F. (2005): BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser Nucleic Acids Research,33:(Web Server): W710-W716.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A.; Morgenstern, B. (2004): AGenDA: gene prediction by cross-species sequence comparison Nucleic Acids Research,32:(Web Server): W305-W308.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
Krüger, J.; Sczyrba, A.; Kurtz, S.; Giegerich, R. (2004): e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences NUCLEIC ACIDS RESEARCH,32:(Web Server): W301-W304.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
Giegerich, R.; Voss, B.; Rehmsmeier, M. (2004): Abstract shapes of RNA Nucleic Acids Research,32:(16): 4843-4851.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773836 OA
Chen, M.; Lin, S.; Hofestädt, R. (2004): STCDB: Signal Transduction Classification Database Nucleic Acids Research,32:(90001): D456-D458.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
Sczyrba, A.; Krüger, J.; Mersch, H.; Kurtz, S.; Giegerich, R. (2003): RNA-related tools on the Bielefeld Bioinformatics Server Nucleic Acids Research,31:(13): 3767-3770.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
Meyer, F.; Goesmann, A.; McHardy, A. C.; Bartels, D.; Bekel, T.; Clausen, J.; Kalinowski, J.; Linke, B.; Rupp, O.; Giegerich, R.; Pühler, A. (2003): GenDB - an open source genome annotation system for prokaryote genomes Nucleic Acids Research,31:(8): 2187-2195.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773887 OA
Leuchtenberger, S.; Perz, A.; Gatz, C.; Bartsch, J. W. (2001): Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells Nucleic Acids Research,29:(16): 76e-76.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335 OA
Kurtz, S.; Choudhuri, J. V.; Ohlebusch, E.; Schleiermacher, C.; Stoye, J.; Giegerich, R. (2001): REPuter: the manifold applications of repeat analysis on a genomic scale Nucleic Acids Research,29:(22): 4633-4642.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773893 OA
Schneiker-Bekel, S.; Keller, M.; Dröge, M.; Lanka, E.; Pühler, A.; Selbitschka, W. (2001): The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa Nucleic Acids Res,29:(24): 5169-5181.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773898 OA
Gräf, S.; Strothmann, D.; Kurtz, S.; Steger, G. (2001): HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns Nucleic Acids Research,29:(1): 196-198.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause, A.; Stoye, J.; Vingron, M. (2000): The SYSTERS protein sequence cluster set Nucleic Acids Research,28:(1): 270-272.
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773962 OA
Hillemann, D.; Pühler, A.; Wohlleben, W. (1991): Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors Nucleic Acids Research,19:(4): 727-731.
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1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868030
Spiker, S.; Weisshaar, B.; da Costa e Silva, O.; Hahlbrock, K. (1990): Sequence of a histone H2A cDNA from parsley Nucleic Acids Research,18:(19): 5897.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375969
Colonna-Romano, S.; Riccio, A.; Guida, M.; Defez, R.; Lamberti, A.; Iaccarino, M.; Arnold, W.; Priefer, U.; Pühler, A. (1987): Tight linkage of glnA and a putative regulatory gene in Rhizobium leguminosarum Nucleic Acids Research,15:(5): 1951-1964.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773940 OA
Grönger, P.; Manian, S. S.; Reiländer, H.; O´Connell, M.; Priefer, U. B.; Pühler, A. (1987): Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame Nucleic Acids Research,15:(1): 31-49.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990311
Geisel, J.; Weisshaar, B.; Oette, K.; Mechtel, M.; Doerfler, W. (1987): Double Msp I RFLP in the human LDL receptor gene Nucleic Acids Research,15:(9): 3943.
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