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55 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult, F., Lee, T.N., Albersmeier, A., Rauch, B., Blumenkamp, P., van der Does, C., Goesmann, A., Kalinowski, J., Albers, S.-V., Siebers, B.: Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. NUCLEIC ACIDS RESEARCH. 46, 7179-7192 (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920779 OA
Baier, T., Wichmann, J., Kruse, O., Lauersen, K.J.: Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii. Nucleic Acids Research. 46, 6909-6919 (2018).
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S., Jahn, K., Wehner, S., Kuchenbecker, L., Marz, M., Stoye, J., Böcker, S.: Finding approximate gene clusters with GECKO 3. Nucleic Acids Research. 44, 9600-9610 (2016).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
Köster, T., Meyer, K., Weinholdt, C., Smith, L.M., Lummer, M., Speth, C., Grosse, I., Weigel, D., Staiger, D.: Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic acids research. 42, 9925-9936 (2014).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934072
Schneider, K., Fuchs, C., Dobay, A., Rottach, A., Qin, W., Wolf, P., Álvarez-Castro, J.M., Nalaskowski, M.M., Kremmer, E., Schmid, V., Leonhardt, H., Schermelleh, L.: Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling. Nucleic Acids Research. 41, 4860-4876 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579031
Wobbe, L., Nixon, P.J.: The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii. Nucleic Acids Research. 41, 6553-6567 (2013).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448791 OA
Kleinbölting, N., Huep, G., Klotgen, A., Viehöver, P., Weisshaar, B.: GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research. 40, D1211-D1215 (2012).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
Streitner, C., Köster, T., Simpson, C.G., Shaw, P., Danisman, S., Brown, J.W.S., Staiger, D.: An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic acids research. 40, 11240-11255 (2012).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471873
Pauling, J., Rottger, R., Tauch, A., Azevedo, V., Baumbach, J.: CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Research. 40, D610-D614 (2012).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528126
Mönke, G., Seifert, M., Keilwagen, J., Mohr, M., Grosse, I., Hähnel, U., Junker, A., Weisshaar, B., Conrad, U., Bäumlein, H., Altschmied, L.: Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Research. 40, 8240-8254 (2012).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2523617
Lobo, F.P., Rodrigues, M.R., Rodrigues, G.O.L., Hilario, H.O., Souza, R.A., Tauch, A., Miyoshi, A., Franco, G.C., Azevedo, V., Franco, G.R.: KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa. Nucleic Acids Research. 40, W491-W497 (2012).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2298170 OA
Gerlach, W., Stoye, J.: Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 39, e91 (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1987138
Grewe, F., Herres, S., Viehöver, P., Polsakiewicz, M., Weisshaar, B., Knoop, V.: A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 39, 2890-2902 (2011).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590766
Grewe, F., Viehöver, P., Weisshaar, B., Knoop, V.: A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 37, 5093-5104 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539 OA
Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., Merkle, T.: Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research. 37, 4010-4021 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk, J., Kohl, T.A., Goesmann, A., Kalinowski, J., Baumbach, J.: From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. NUCLEIC ACIDS RESEARCH. 37, e97 (2009).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783375 OA
Schöning, J.C., Streitner, C., Meyer, I.M., Gao, Y., Staiger, D.: Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Research. 36, 6977-6987 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., Goesmann, A.: Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH. 36, W433-W437 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
Theis, C., Reeder, J., Giegerich, R.: KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 36, 6013-6020 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N.N., Goesmann, A., Kelley, S., Nattkemper, T.W., Rohwer, F., Edwards, R.A., Stoye, J.: Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 36, 2230-2239 (2008).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596131 OA
Li, Y., Rosso, M.G., Viehöver, P., Weisshaar, B.: GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research. 35, D874-D878 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
Reeder, J., Steffen, P., Giegerich, R.: pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. NUCLEIC ACIDS RESEARCH. 35, W320-W324 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587979 OA
Kaiser, A., Krüger, J., Evers, D.J.: RNA Movies 2: sequential animation of RNA secondary structures. NUCLEIC ACIDS RESEARCH. 35, W330-W334 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A.C., Nattkemper, T.W., Pühler, A., Stoye, J., Meyer, F.: GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research. 35, 540-549 (2007).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383467
Krüger, J., Rehmsmeier, M.: RNAhybrid: microRNA target prediction easy, fast, and flexible. Nucleic Acids Research. 34, W451-W454 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773878 OA
Krüger, J., Rehmsmeier, M.: RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 34, W451-W454 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773848 OA
Kim, J., Doose, S., Neuweiler, H., Sauer, M.: The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. Nucleic Acids Research. 34, 2516-2527 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773904 OA
Marme, N., Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Hoheisel, J.D., Sauer, M., Knemeyer, J.-P.: Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Research. 34, e90 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773916 OA
Fiedler, T., Rehmsmeier, M.: jPREdictor: a versatile tool for the prediction of cis-regulatory elements. Nucleic Acids Research. 34, W546-W550 (2006).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
Röpcke, S., Grossmann, S., Rahmann, S., Vingron, M.: T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Research. 33, W438-W441 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
Ehrich, M., Böcker, S., Boom van den, D.: Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Res. 33, e38 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
Overbeek, R., Begley, T., Butler, R.M., Choudhuri, J.V., Chuang, H.-Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N.N., Disz, T., Edwards, R., Fonstein, M., Frank, E.D., Gerdes, S., Glass, E.M., Goesmann, A., Hanson, A., Iwata-Reuyl, D., Jensen, R., Jamshidi, N., Krause, L., Kubal, M., Larsen, N., Linke, B., McHardy, A.C., Meyer, F., Neuweger, H., Olsen, G., Olson, R., Osterman, A., Portnoy, V., Pusch, G.D., Rodionov, D.A., Rückert, C., Steiner, J., Stevens, R., Thiele, I., Vassieva, O., Ye, Y., Zagnitko, O., Vonstein, V.: The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research. 33, 5691-5702 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773690 OA
Ehrich, M., Böcker, S., Boom, D. van den: Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Research. 33, e38 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A., Meyer, F.: BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research. 33, W710-W716 (2005).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
Taher, L., Rinner, O., Garg, S., Sczyrba, A., Morgenstern, B.: AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research. 32, W305-W308 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
Krüger, J., Sczyrba, A., Kurtz, S., Giegerich, R.: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH. 32, W301-W304 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
Giegerich, R., Voss, B., Rehmsmeier, M.: Abstract shapes of RNA. Nucleic Acids Research. 32, 4843-4851 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773836 OA
Chen, M., Lin, S., Hofestädt, R.: STCDB: Signal Transduction Classification Database. Nucleic Acids Research. 32, D456-D458 (2004).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S., Giegerich, R.: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research. 31, 3767-3770 (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., Pühler, A.: GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 31, 2187-2195 (2003).
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773887 OA
Leuchtenberger, S., Perz, A., Gatz, C., Bartsch, J.W.: Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells. Nucleic Acids Research. 29, 76e-76 (2001).
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335 OA
Kurtz, S., Choudhuri, J.V., Ohlebusch, E., Schleiermacher, C., Stoye, J., Giegerich, R.: REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Research. 29, 4633-4642 (2001).
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773893 OA
Schneiker-Bekel, S., Keller, M., Dröge, M., Lanka, E., Pühler, A., Selbitschka, W.: The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 29, 5169-5181 (2001).
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773898 OA
Gräf, S., Strothmann, D., Kurtz, S., Steger, G.: HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research. 29, 196-198 (2001).
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause, A., Stoye, J., Vingron, M.: The SYSTERS protein sequence cluster set. Nucleic Acids Research. 28, 270-272 (2000).
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773962 OA
Hillemann, D., Pühler, A., Wohlleben, W.: Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors. Nucleic Acids Research. 19, 727-731 (1991).
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1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868030
Spiker, S., Weisshaar, B., da Costa e Silva, O., Hahlbrock, K.: Sequence of a histone H2A cDNA from parsley. Nucleic Acids Research. 18, 5897 (1990).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375969
Colonna-Romano, S., Riccio, A., Guida, M., Defez, R., Lamberti, A., Iaccarino, M., Arnold, W., Priefer, U., Pühler, A.: Tight linkage of glnA and a putative regulatory gene in Rhizobium leguminosarum. Nucleic Acids Research. 15, 1951-1964 (1987).
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773940 OA
Grönger, P., Manian, S.S., Reiländer, H., O´Connell, M., Priefer, U.B., Pühler, A.: Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame. Nucleic Acids Research. 15, 31-49 (1987).
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990311
Geisel, J., Weisshaar, B., Oette, K., Mechtel, M., Doerfler, W.: Double Msp I RFLP in the human LDL receptor gene. Nucleic Acids Research. 15, 3943 (1987).
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