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55 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult, F., Lee, T.N., Albersmeier, A., Rauch, B., Blumenkamp, P., van der Does, C., Goesmann, A., Kalinowski, J., Albers, S.-V. & Siebers, B. (2018). Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. NUCLEIC ACIDS RESEARCH, 46(14), 7179-7192. Oxford Univ Press. doi:10.1093/nar/gky527.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920779 OA
Baier, T., Wichmann, J., Kruse, O. & Lauersen, K.J. (2018). Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii. Nucleic Acids Research, 46(13), 6909-6919. Oxford University Press (OUP). doi:10.1093/nar/gky532.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S., Jahn, K., Wehner, S., Kuchenbecker, L., Marz, M., Stoye, J. & Böcker, S. (2016). Finding approximate gene clusters with GECKO 3. Nucleic Acids Research, 44(20), 9600-9610. doi:10.1093/nar/gkw843.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
Köster, T., Meyer, K., Weinholdt, C., Smith, L.M., Lummer, M., Speth, C., Grosse, I., Weigel, D. & Staiger, D. (2014). Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic acids research, 42(15), 9925-9936. Oxford University Press (OUP). doi:10.1093/nar/gku716.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934072
Schneider, K., Fuchs, C., Dobay, A., Rottach, A., Qin, W., Wolf, P., Álvarez-Castro, J.M., Nalaskowski, M.M., Kremmer, E., Schmid, V., Leonhardt, H. & Schermelleh, L. (2013). Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling. Nucleic Acids Research, 41(9), 4860-4876. Oxford University Press (OUP). doi:10.1093/nar/gkt191.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579031
Wobbe, L. & Nixon, P.J. (2013). The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii. Nucleic Acids Research, 41(13), 6553-6567. Oxford University Press (OUP). doi:10.1093/nar/gkt313.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448791 OA
Kleinbölting, N., Huep, G., Klotgen, A., Viehöver, P. & Weisshaar, B. (2012). GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research, 40(D1), D1211-D1215. Oxford University Press (OUP). doi:10.1093/nar/gkr1047.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
Streitner, C., Köster, T., Simpson, C.G., Shaw, P., Danisman, S., Brown, J.W.S. & Staiger, D. (2012). An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic acids research, 40(22), 11240-11255. Oxford University Press (OUP). doi:10.1093/nar/gks873.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471873
Pauling, J., Rottger, R., Tauch, A., Azevedo, V. & Baumbach, J. (2012). CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Research, 40(D1), D610-D614. Oxford University Press (OUP). doi:10.1093/nar/gkr883.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528126
Mönke, G., Seifert, M., Keilwagen, J., Mohr, M., Grosse, I., Hähnel, U., Junker, A., Weisshaar, B., Conrad, U., Bäumlein, H. & Altschmied, L. (2012). Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Research, 40(17), 8240-8254. Oxford University Press (OUP). doi:10.1093/nar/gks594.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2523617
Lobo, F.P., Rodrigues, M.R., Rodrigues, G.O.L., Hilario, H.O., Souza, R.A., Tauch, A., Miyoshi, A., Franco, G.C., Azevedo, V. & Franco, G.R. (2012). KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa. Nucleic Acids Research, 40(W1), W491-W497. Oxford University Press (OUP). doi:10.1093/nar/gks490.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2298170 OA
Gerlach, W. & Stoye, J. (2011). Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res, 39(14), e91. Oxford University Press (OUP). doi:10.1093/nar/gkr225.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1987138
Grewe, F., Herres, S., Viehöver, P., Polsakiewicz, M., Weisshaar, B. & Knoop, V. (2011). A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii. Nucleic Acids Research, 39(7), 2890-2902. Oxford University Press (OUP). doi:10.1093/nar/gkq1227.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590766
Grewe, F., Viehöver, P., Weisshaar, B. & Knoop, V. (2009). A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research, 37(15), 5093-5104. Oxford University Press (OUP). doi:10.1093/nar/gkp532.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk, J., Kohl, T.A., Goesmann, A., Kalinowski, J. & Baumbach, J. (2009). From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. NUCLEIC ACIDS RESEARCH, 37(14), e97. Oxford University Press (OUP). doi:10.1093/nar/gkp453.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539 OA
Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M. & Merkle, T. (2009). Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research, 37(12), 4010-4021. Oxford University Press (OUP). doi:10.1093/nar/gkp272.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783375 OA
Schöning, J.C., Streitner, C., Meyer, I.M., Gao, Y. & Staiger, D. (2008). Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Research, 36(22), 6977-6987. doi:10.1093/nar/gkn847.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S., Gilbert, D., Tauch, A., Stoye, J. & Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH, 36(Web Server), W433-W437. OXFORD UNIV PRESS. doi:10.1093/nar/gkn284.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
Theis, C., Reeder, J. & Giegerich, R. (2008). KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research, 36(18), 6013-6020. doi:10.1093/nar/gkn578.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N.N., Goesmann, A., Kelley, S., Nattkemper, T.W., Rohwer, F., Edwards, R.A. & Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36(7), 2230-2239. doi:10.1093/nar/gkn038.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596131 OA
Li, Y., Rosso, M.G., Viehöver, P. & Weisshaar, B. (2007). GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research, 35(Database), D874-D878. OXFORD UNIV PRESS. doi:10.1093/nar/gkl753.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
Reeder, J., Steffen, P. & Giegerich, R. (2007). pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. NUCLEIC ACIDS RESEARCH, 35(Web Server), W320-W324. OXFORD UNIV PRESS. doi:10.1093/nar/gkm258.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587979 OA
Kaiser, A., Krüger, J. & Evers, D.J. (2007). RNA Movies 2: sequential animation of RNA secondary structures. NUCLEIC ACIDS RESEARCH, 35(Web Server), W330-W334. OXFORD UNIV PRESS. doi:10.1093/nar/gkm309.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A.C., Nattkemper, T.W., Pühler, A., Stoye, J. & Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research, 35(2), 540-549. doi:10.1093/nar/gkl1083.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383467
Krüger, J. & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast, and flexible. Nucleic Acids Research, 34(Web Server), W451-W454. doi:10.1093/nar/gkl243.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773878 OA
Krüger, J. & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), W451-W454. doi:10.1093/nar/gkl243.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773848 OA
Kim, J., Doose, S., Neuweiler, H. & Sauer, M. (2006). The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. Nucleic Acids Research, 34(9), 2516-2527. doi:10.1093/nar/gkl221.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773904 OA
Marme, N., Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Hoheisel, J.D., Sauer, M. & Knemeyer, J.-P. (2006). Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Research, 34(13), e90. doi:10.1093/nar/gkl495.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773916 OA
Fiedler, T. & Rehmsmeier, M. (2006). jPREdictor: a versatile tool for the prediction of cis-regulatory elements. Nucleic Acids Research, 34(Web Server), W546-W550. doi:10.1093/nar/gkl250.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
Röpcke, S., Grossmann, S., Rahmann, S. & Vingron, M. (2005). T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Research, 33(Web Server), W438-W441. doi:10.1093/nar/gki590.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
Ehrich, M., Böcker, S. & Boom van den, D. (2005). Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Res., 33(4), e38. doi:10.1093/nar/gni038.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
Overbeek, R., Begley, T., Butler, R.M., Choudhuri, J.V., Chuang, H.-Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N.N., Disz, T., Edwards, R., Fonstein, M., Frank, E.D., Gerdes, S., Glass, E.M., Goesmann, A., Hanson, A., Iwata-Reuyl, D., Jensen, R., Jamshidi, N., Krause, L., Kubal, M., Larsen, N., Linke, B., McHardy, A.C., Meyer, F., Neuweger, H., Olsen, G., Olson, R., Osterman, A., Portnoy, V., Pusch, G.D., Rodionov, D.A., Rückert, C., Steiner, J., Stevens, R., Thiele, I., Vassieva, O., Ye, Y., Zagnitko, O. & Vonstein, V. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research, 33(17), 5691-5702. doi:10.1093/nar/gki866.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773690 OA
Ehrich, M., Böcker, S. & Boom, D. van den. (2005). Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Research, 33(4), e38. doi:10.1093/nar/gni038.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A. & Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research, 33(Web Server), W710-W716. doi:10.1093/nar/gki400.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
Taher, L., Rinner, O., Garg, S., Sczyrba, A. & Morgenstern, B. (2004). AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research, 32(Web Server), W305-W308. OXFORD UNIV PRESS. doi:10.1093/nar/gkh386.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
Krüger, J., Sczyrba, A., Kurtz, S. & Giegerich, R. (2004). e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH, 32(Web Server), W301-W304. OXFORD UNIV PRESS. doi:10.1093/nar/gkh478.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
Giegerich, R., Voss, B. & Rehmsmeier, M. (2004). Abstract shapes of RNA. Nucleic Acids Research, 32(16), 4843-4851. Oxford Univ. Press. doi:10.1093/nar/gkh779.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773836 OA
Chen, M., Lin, S. & Hofestädt, R. (2004). STCDB: Signal Transduction Classification Database. Nucleic Acids Research, 32(90001), D456-D458. doi:10.1093/nar/gkh079.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S. & Giegerich, R. (2003). RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research, 31(13), 3767-3770. doi:10.1093/nar/gkg576.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R. & Pühler, A. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195. doi:10.1093/nar/gkg312.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773887 OA
Leuchtenberger, S., Perz, A., Gatz, C. & Bartsch, J.W. (2001). Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells. Nucleic Acids Research, 29(16), 76e-76. doi:10.1093/nar/29.16.e76.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335 OA
Kurtz, S., Choudhuri, J.V., Ohlebusch, E., Schleiermacher, C., Stoye, J. & Giegerich, R. (2001). REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Research, 29(22), 4633-4642. doi:10.1093/nar/29.22.4633.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773893 OA
Schneiker-Bekel, S., Keller, M., Dröge, M., Lanka, E., Pühler, A. & Selbitschka, W. (2001). The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res, 29(24), 5169-5181. doi:10.1093/nar/29.24.5169.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773898 OA
Gräf, S., Strothmann, D., Kurtz, S. & Steger, G. (2001). HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research, 29(1), 196-198. doi:10.1093/nar/29.1.196.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause, A., Stoye, J. & Vingron, M. (2000). The SYSTERS protein sequence cluster set. Nucleic Acids Research, 28(1), 270-272. doi:10.1093/nar/28.1.270.
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773962 OA
Hillemann, D., Pühler, A. & Wohlleben, W. (1991). Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors. Nucleic Acids Research, 19(4), 727-731. doi:10.1093/nar/19.4.727.
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1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868030
Spiker, S., Weisshaar, B., da Costa e Silva, O. & Hahlbrock, K. (1990). Sequence of a histone H2A cDNA from parsley. Nucleic Acids Research, 18(19), 5897. doi:10.1093/nar/18.19.5897.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375969
Colonna-Romano, S., Riccio, A., Guida, M., Defez, R., Lamberti, A., Iaccarino, M., Arnold, W., Priefer, U. & Pühler, A. (1987). Tight linkage of glnA and a putative regulatory gene in Rhizobium leguminosarum. Nucleic Acids Research, 15(5), 1951-1964. Oxford University Press (OUP). doi:10.1093/nar/15.5.1951.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773940 OA
Grönger, P., Manian, S.S., Reiländer, H., O´Connell, M., Priefer, U.B. & Pühler, A. (1987). Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame. Nucleic Acids Research, 15(1), 31-49. doi:10.1093/nar/15.1.31.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990311
Geisel, J., Weisshaar, B., Oette, K., Mechtel, M. & Doerfler, W. (1987). Double Msp I RFLP in the human LDL receptor gene. Nucleic Acids Research, 15(9), 3943. doi:10.1093/nar/15.9.3943.
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