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55 Publikationen
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
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Schult, Frank, Lee, Thuong N., Albersmeier, Andreas, Rauch, Bernadette, Blumenkamp, Patrick, van der Does, Chris, Goesmann, Alexander, Kalinowski, Jörn, Albers, Sonja-Verena, and Siebers, Bettina. 2018. “Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response”. NUCLEIC ACIDS RESEARCH 46 (14): 7179-7192.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920779 
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Baier, Thomas, Wichmann, Julian, Kruse, Olaf, and Lauersen, Kyle J. 2018. “Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii”. Nucleic Acids Research 46 (13): 6909-6919.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
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Winter, Sascha, Jahn, Katharina, Wehner, Stefanie, Kuchenbecker, Leon, Marz, Manja, Stoye, Jens, and Böcker, Sebastian. 2016. “Finding approximate gene clusters with GECKO 3”. Nucleic Acids Research 44 (20): 9600-9610.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
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Köster, Tino, Meyer, Katja, Weinholdt, Claus, Smith, Lisa M., Lummer, Martina, Speth, Corinna, Grosse, Ivo, Weigel, Detlef, and Staiger, Dorothee. 2014. “Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis”. Nucleic acids research 42 (15): 9925-9936.
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934072
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Schneider, Katrin, Fuchs, Christiane, Dobay, Akos, Rottach, Andrea, Qin, Weihua, Wolf, Patricia, Álvarez-Castro, José M., et al. 2013. “Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling”. Nucleic Acids Research 41 (9): 4860-4876.
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579031
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Wobbe, Lutz, and Nixon, P. J. 2013. “The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii”. Nucleic Acids Research 41 (13): 6553-6567.
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448791
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Kleinbölting, Nils, Huep, Gunnar, Klotgen, Andreas, Viehöver, Prisca, and Weisshaar, Bernd. 2012. “GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database”. Nucleic Acids Research 40 (D1): D1211-D1215.
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
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Streitner, Corinna, Köster, Tino, Simpson, Craig G., Shaw, Paul, Danisman, Selahattin, Brown, John W. S., and Staiger, Dorothee. 2012. “An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana”. Nucleic acids research 40 (22): 11240-11255.
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471873
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Pauling, Josch, Rottger, Richard, Tauch, Andreas, Azevedo, Vasco, and Baumbach, Jan. 2012. “CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands”. Nucleic Acids Research 40 (D1): D610-D614.
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528126
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Mönke, Gudrun, Seifert, Michael, Keilwagen, Jens, Mohr, Michaela, Grosse, Ivo, Hähnel, Urs, Junker, Astrid, et al. 2012. “Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon”. Nucleic Acids Research 40 (17): 8240-8254.
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2523617
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Lobo, Francisco P, Rodrigues, Maira R, Rodrigues, Gisele O L, Hilario, Heron O, Souza, Raoni A, Tauch, Andreas, Miyoshi, Anderson, Franco, Glaura C, Azevedo, Vasco, and Franco, Gloria R. 2012. “KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa”. Nucleic Acids Research 40 (W1): W491-W497.
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1987138
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Grewe, Felix, Herres, Stefan, Viehöver, Prisca, Polsakiewicz, Monika, Weisshaar, Bernd, and Knoop, Volker. 2011. “A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii”. Nucleic Acids Research 39 (7): 2890-2902.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590766
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Grewe, Felix, Viehöver, Prisca, Weisshaar, Bernd, and Knoop, Volker. 2009. “A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii”. Nucleic Acids Research 37 (15): 5093-5104.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
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Krawczyk, Justina, Kohl, Thomas A., Goesmann, Alexander, Kalinowski, Jörn, and Baumbach, Jan. 2009. “From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet”. NUCLEIC ACIDS RESEARCH 37 (14): e97.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539
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Alves jun., Leonardo, Niemeier, Sandra, Hauenschild, Arne, Rehmsmeier, Marc, and Merkle, Thomas. 2009. “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”. Nucleic Acids Research 37 (12): 4010-4021.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783375
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Schöning, Jan C., Streitner, Corinna, Meyer, Irmtraud M., Gao, Yahong, and Staiger, Dorothee. 2008. “Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis”. Nucleic Acids Research 36 (22): 6977-6987.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
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Oehm, Sebastian, Gilbert, David, Tauch, Andreas, Stoye, Jens, and Goesmann, Alexander. 2008. “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”. NUCLEIC ACIDS RESEARCH 36 (Web Server): W433-W437.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
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Krause, Lutz, Diaz, Naryttza N., Goesmann, Alexander, Kelley, Scott, Nattkemper, Tim Wilhelm, Rohwer, Forest, Edwards, Robert A., and Stoye, Jens. 2008. “Phylogenetic classification of short environmental DNA fragments”. Nucleic Acids Research 36 (7): 2230-2239.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596131
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Li, Yong, Rosso, Mario G., Viehöver, Prisca, and Weisshaar, Bernd. 2007. “GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions”. Nucleic Acids Research 35 (Database): D874-D878.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974
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Reeder, Jens, Steffen, Peter, and Giegerich, Robert. 2007. “pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows”. NUCLEIC ACIDS RESEARCH 35 (Web Server): W320-W324.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345
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Krause, Lutz, McHardy, Alice C., Nattkemper, Tim Wilhelm, Pühler, Alfred, Stoye, Jens, and Meyer, Folker. 2007. “GISMO - gene identification using a support vector machine for ORF classification”. Nucleic Acids Research 35 (2): 540-549.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383467
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Krüger, Jan, and Rehmsmeier, Marc. 2006. “RNAhybrid: microRNA target prediction easy, fast, and flexible”. Nucleic Acids Research 34 (Web Server): W451-W454.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773848
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Kim, Jiho, Doose, Sören, Neuweiler, Hannes, and Sauer, Markus. 2006. “The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy”. Nucleic Acids Research 34 (9): 2516-2527.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773904
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Marme, Nicole, Friedrich, Achim, Müller, Matthias, Nolte, Oliver, Wolfrum, Jürgen, Hoheisel, Jörg D., Sauer, Markus, and Knemeyer, Jens-Peter. 2006. “Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy”. Nucleic Acids Research 34 (13): e90.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695
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Röpcke, Stefan, Grossmann, Steffen, Rahmann, Sven, and Vingron, Martin. 2005. “T-Reg Comparator: an analysis tool for the comparison of position weight matrices”. Nucleic Acids Research 33 (Web Server): W438-W441.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
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Ehrich, M., Böcker, S., and Boom van den, D. 2005. “Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS”. Nucleic Acids Res. 33 (4): e38.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
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Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, Crécy-Lagard, Valérie de, et al. 2005. “The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes”. Nucleic Acids Research 33 (17): 5691-5702.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773690
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Ehrich, Mathias, Böcker, Sebastian, and Boom, Dirk van den. 2005. “Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS”. Nucleic Acids Research 33 (4): e38.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
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Goesmann, Alexander, Linke, Burkhard, Bartels, Daniela, Dondrup, Michael, Krause, Lutz, Neuweger, Heiko, Oehm, Sebastian, Paczian, Tobias, Wilke, Andreas, and Meyer, Folker. 2005. “BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser”. Nucleic Acids Research 33 (Web Server): W710-W716.
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394
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Krüger, Jan, Sczyrba, Alexander, Kurtz, Stefan, and Giegerich, Robert. 2004. “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”. NUCLEIC ACIDS RESEARCH 32 (Web Server): W301-W304.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844
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Sczyrba, Alexander, Krüger, Jan, Mersch, Henning, Kurtz, Stefan, and Giegerich, Robert. 2003. “RNA-related tools on the Bielefeld Bioinformatics Server”. Nucleic Acids Research 31 (13): 3767-3770.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
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Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, et al. 2003. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31 (8): 2187-2195.
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773887
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Leuchtenberger, Stefanie, Perz, Angela, Gatz, Christiane, and Bartsch, Jörg W. 2001. “Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells”. Nucleic Acids Research 29 (16): 76e-76.
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335
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Kurtz, Stefan, Choudhuri, Jomuna V., Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, and Giegerich, Robert. 2001. “REPuter: the manifold applications of repeat analysis on a genomic scale”. Nucleic Acids Research 29 (22): 4633-4642.
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773893
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| GenBank
Schneiker-Bekel, Susanne, Keller, Mathias, Dröge, Marcus, Lanka, Erich, Pühler, Alfred, and Selbitschka, Werner. 2001. “The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa”. Nucleic Acids Res 29 (24): 5169-5181.
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773898
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Gräf, Stefan, Strothmann, Dirk, Kurtz, Stefan, and Steger, Gerhard. 2001. “HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns”. Nucleic Acids Research 29 (1): 196-198.
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773962
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Hillemann, Doris, Pühler, Alfred, and Wohlleben, Wolfgang. 1991. “Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors”. Nucleic Acids Research 19 (4): 727-731.
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375969
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Colonna-Romano, S, Riccio, A, Guida, M, Defez, R, Lamberti, A, Iaccarino, M, Arnold, Walter, Priefer, U, and Pühler, Alfred. 1987. “Tight linkage of glnA and a putative regulatory gene in Rhizobium leguminosarum”. Nucleic Acids Research 15 (5): 1951-1964.
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773940
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Grönger, Petra, Manian, Sundaram S., Reiländer, Helmut, O´Connell, Michael, Priefer, Ursula B., and Pühler, Alfred. 1987. “Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame”. Nucleic Acids Research 15 (1): 31-49.
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990311
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Geisel, J, Weisshaar, Bernd, Oette, K, Mechtel, M, and Doerfler, W. 1987. “Double Msp I RFLP in the human LDL receptor gene”. Nucleic Acids Research 15 (9): 3943.