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55 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult F, Lee TN, Albersmeier A, et al. Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. NUCLEIC ACIDS RESEARCH. 2018;46(14):7179-7192.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920779 OA
Baier T, Wichmann J, Kruse O, Lauersen KJ. Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii. Nucleic Acids Research. 2018;46(13):6909-6919.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter S, Jahn K, Wehner S, et al. Finding approximate gene clusters with GECKO 3. Nucleic Acids Research. 2016;44(20):9600-9610.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
Köster T, Meyer K, Weinholdt C, et al. Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic acids research. 2014;42(15):9925-9936.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934072
Schneider K, Fuchs C, Dobay A, et al. Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling. Nucleic Acids Research. 2013;41(9):4860-4876.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579031
Wobbe L, Nixon PJ. The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii. Nucleic Acids Research. 2013;41(13):6553-6567.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448791 OA
Kleinbölting N, Huep G, Klotgen A, Viehöver P, Weisshaar B. GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Research. 2012;40(D1):D1211-D1215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
Streitner C, Köster T, Simpson CG, et al. An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic acids research. 2012;40(22):11240-11255.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471873
Pauling J, Rottger R, Tauch A, Azevedo V, Baumbach J. CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Research. 2012;40(D1):D610-D614.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528126
Mönke G, Seifert M, Keilwagen J, et al. Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Research. 2012;40(17):8240-8254.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2523617
Lobo FP, Rodrigues MR, Rodrigues GOL, et al. KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa. Nucleic Acids Research. 2012;40(W1):W491-W497.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2298170 OA
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 2011;39(14):e91.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1987138
Grewe F, Herres S, Viehöver P, Polsakiewicz M, Weisshaar B, Knoop V. A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 2011;39(7):2890-2902.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590766
Grewe F, Viehöver P, Weisshaar B, Knoop V. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 2009;37(15):5093-5104.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J. From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. NUCLEIC ACIDS RESEARCH. 2009;37(14):e97.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539 OA
Alves jun. L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T. Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research. 2009;37(12):4010-4021.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783375 OA
Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D. Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Research. 2008;36(22):6977-6987.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A. Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH. 2008;36(Web Server):W433-W437.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
Theis C, Reeder J, Giegerich R. KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 2008;36(18):6013-6020.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause L, Diaz NN, Goesmann A, et al. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 2008;36(7):2230-2239.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596131 OA
Li Y, Rosso MG, Viehöver P, Weisshaar B. GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Research. 2007;35(Database):D874-D878.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
Reeder J, Steffen P, Giegerich R. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. NUCLEIC ACIDS RESEARCH. 2007;35(Web Server):W320-W324.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587979 OA
Kaiser A, Krüger J, Evers DJ. RNA Movies 2: sequential animation of RNA secondary structures. NUCLEIC ACIDS RESEARCH. 2007;35(Web Server):W330-W334.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F. GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research. 2007;35(2):540-549.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383467
Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast, and flexible. Nucleic Acids Research. 2006;34(Web Server):W451-W454.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773878 OA
Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 2006;34(Web Server):W451-W454.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773848 OA
Kim J, Doose S, Neuweiler H, Sauer M. The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. Nucleic Acids Research. 2006;34(9):2516-2527.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773904 OA
Marme N, Friedrich A, Müller M, et al. Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Research. 2006;34(13):e90.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773916 OA
Fiedler T, Rehmsmeier M. jPREdictor: a versatile tool for the prediction of cis-regulatory elements. Nucleic Acids Research. 2006;34(Web Server):W546-W550.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
Röpcke S, Grossmann S, Rahmann S, Vingron M. T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Research. 2005;33(Web Server):W438-W441.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
Ehrich M, Böcker S, Boom van den D. Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Res. 2005;33(4):e38.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
Overbeek R, Begley T, Butler RM, et al. The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research. 2005;33(17):5691-5702.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773690 OA
Ehrich M, Böcker S, Boom D van den. Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS. Nucleic Acids Research. 2005;33(4):e38.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
Goesmann A, Linke B, Bartels D, et al. BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research. 2005;33(Web Server):W710-W716.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
Taher L, Rinner O, Garg S, Sczyrba A, Morgenstern B. AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research. 2004;32(Web Server):W305-W308.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
Krüger J, Sczyrba A, Kurtz S, Giegerich R. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH. 2004;32(Web Server):W301-W304.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
Giegerich R, Voss B, Rehmsmeier M. Abstract shapes of RNA. Nucleic Acids Research. 2004;32(16):4843-4851.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773836 OA
Chen M, Lin S, Hofestädt R. STCDB: Signal Transduction Classification Database. Nucleic Acids Research. 2004;32(90001):D456-D458.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
Sczyrba A, Krüger J, Mersch H, Kurtz S, Giegerich R. RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research. 2003;31(13):3767-3770.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
Meyer F, Goesmann A, McHardy AC, et al. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 2003;31(8):2187-2195.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773887 OA
Leuchtenberger S, Perz A, Gatz C, Bartsch JW. Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells. Nucleic Acids Research. 2001;29(16):76e-76.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335 OA
Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R. REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Research. 2001;29(22):4633-4642.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773893 OA
Schneiker-Bekel S, Keller M, Dröge M, Lanka E, Pühler A, Selbitschka W. The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 2001;29(24):5169-5181.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773898 OA
Gräf S, Strothmann D, Kurtz S, Steger G. HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research. 2001;29(1):196-198.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause A, Stoye J, Vingron M. The SYSTERS protein sequence cluster set. Nucleic Acids Research. 2000;28(1):270-272.
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773962 OA
Hillemann D, Pühler A, Wohlleben W. Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors. Nucleic Acids Research. 1991;19(4):727-731.
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1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868030
Spiker S, Weisshaar B, da Costa e Silva O, Hahlbrock K. Sequence of a histone H2A cDNA from parsley. Nucleic Acids Research. 1990;18(19):5897.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375969
Colonna-Romano S, Riccio A, Guida M, et al. Tight linkage of glnA and a putative regulatory gene in Rhizobium leguminosarum. Nucleic Acids Research. 1987;15(5):1951-1964.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773940 OA
Grönger P, Manian SS, Reiländer H, O´Connell M, Priefer UB, Pühler A. Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame. Nucleic Acids Research. 1987;15(1):31-49.
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1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990311
Geisel J, Weisshaar B, Oette K, Mechtel M, Doerfler W. Double Msp I RFLP in the human LDL receptor gene. Nucleic Acids Research. 1987;15(9):3943.
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