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45 Publikationen

2020 | Konferenzbeitrag | Angenommen | PUB-ID: 2939729
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (Accepted)
In: Proceedings of RECOMB 2020. LNBI. .
PUB
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
arXiv:2001.02139.
PUB | arXiv
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939598
Horizontal Gene Transfer Phylogenetics: A Random Walk Approach
Sevillya G, Dörr D, Lerner Y, Stoye J, Steel M, Snir S (Accepted)
Molecular Biology and Evolution.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941677
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
Denti L, Previtali M, Bernardini G, Schönhuth A, Bonizzoni P (2019)
iScience 18: 20-27.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2019)
Bioinformatics 35(24): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype
Yin B, Balvert M, van der Spek RAA, Dutilh BE, Bohté S, Veldink J, Schönhuth A (2019)
Bioinformatics 35(14): i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941760
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection
Lopez-Rincon A, Martinez-Archundia M, Martinez-Ruiz GU, Schönhuth A, Tonda A (2019)
BMC Bioinformatics 20(1): 480.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Overlap graph-based generation of haplotigs for diploids and polyploids
Baaijens JA, Schönhuth A (2019)
Bioinformatics 35(21): 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2941762
OGRE: Overlap Graph-based metagenomic Read clustEring
Balvert M, Hauptfeld T, Schönhuth A, Dutilh BE (2019)
bioRxiv.
PUB | bioRxiv
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2941763
Strain-aware assembly of genomes from mixed samples using flow variation graphs
Baaijens JA, Stougie L, Schönhuth A (2019)
bioRxiv.
PUB | bioRxiv
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2941764
12 Grand Challenges in Single-Cell Data Science
Laehnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Beerenwinkel N, Campbell KR, Mahfouz A, Pinello L, et al. (2019)
PeerJ.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941769
Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
Ibrahim B, Arkhipova K, Andeweg A, Posada-Céspedes S, Enault F, Gruber A, Koonin E, Kupczok A, Lemey P, McHardy A, McMahon D, et al. (2018)
Viruses 10(5): 256.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Preprint | Veröffentlicht | PUB-ID: 2941767
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2018)
bioRxiv.
PUB | bioRxiv
 
2018 | Preprint | Veröffentlicht | PUB-ID: 2941768
An image representation based convolutional network for DNA classification
Yin B, Balvert M, Zambrano D, Schönhuth A, Bohte S (2018)
arXiv:1806.04931.
PUB | arXiv
 
2018 | Preprint | Veröffentlicht | PUB-ID: 2941765
Dualities in Tree Representations
Chikhi R, Schönhuth A (2018)
arXiv:1804.04263.
PUB | arXiv
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941784
De novo assembly of viral quasispecies using overlap graphs
Baaijens JA, Aabidine AZE, Rivals E, Schönhuth A (2017)
Genome Research 27(5): 835-848.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941785
A probabilistic model to recover individual genomes from metagenomes
Dröge J, Schönhuth A, McHardy AC (2017)
PeerJ Computer Science 3: e117.
PUB | DOI | WoS
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Genotyping inversions and tandem duplications
Ebler J, Schönhuth A, Marschall T (2017)
Bioinformatics 33(24): 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2941789 PUB | bioRxiv
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941788
A framework for the detection of de novo mutations in family-based sequencing data
Francioli LC, Cretu-Stancu M, Garimella KV, Fromer M, Kloosterman WP, Samocha KE, Neale BM, Daly MJ, Banks E, DePristo MA, de Bakker PIW, et al. (2016)
European Journal of Human Genetics 25(2): 227-233.
PUB | DOI | WoS | PubMed | Europe PMC
 

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