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3249 Publikationen

2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch, Andreas, Schlüter, Andreas, Bischoff, N., Goesmann, Alexander, Meyer, F., and Pühler, Alfred. “The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family”. Molecular Genetics and Genomics 268.5 (2003): 570-584.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612470
Morgenstern, B, Goel, S, Sczyrba, Alexander, and Dress, Andreas. “AltAVisT: Comparing alternative multiple sequence alignments”. BIOINFORMATICS 19.3 (2003): 425-426.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612610
Horling, F., Lamkemeyer, P., König, Janine, Finkemeier, I., Kandlbinder, Andrea, Baier, M., and Dietz, Karl-Josef. “Divergent light-, ascorbate-, and oxidative stress-dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis”. Plant Physiology 131.1 (2003): 317-325.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611943
Golldack, Dortje, Vera, P., and Dietz, Karl-Josef. “Expression of subtilisin-like serine proteases in Arabidopsis thaliana is cell-specific and responds to jasmonic acid and heavy metals with developmental differences”. PHYSIOLOGIA PLANTARUM 118.1 (2003): 64-73.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773767
Brudno, Michael, Chapman, Michael, Göttgens, Berthold, Batzoglou, Serafim, and Morgenstern, Burkhard. “Fast and sensitive multiple alignment of large genomic sequences”. BMC Bioinformatics 4.1 (2003): 66.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844
Sczyrba, Alexander, Krüger, Jan, Mersch, Henning, Kurtz, Stefan, and Giegerich, Robert. “RNA-related tools on the Bielefeld Bioinformatics Server”. Nucleic Acids Research 31.13 (2003): 3767-3770.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990229
Hunger, Sandra, Di Gaspero, Gabriele, Mohring, Slike, Bellin, Diana, Schafer-Pregl, Ralf, Borchardt, Dietrich C, Durel, Charles-Eric, Werber, Martin, Weisshaar, Bernd, Salamini, Francesco, and Schneider, Katharina. “Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.)”. Genome 46.1 (2003): 70-82.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, Linke, Burkhard, Rupp, Oliver, Giegerich, Robert, and Pühler, Alfred. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31.8 (2003): 2187-2195.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1914161
Piechaczek, Christoph, Widera, Darius, Micheli, Daniella, Schwamborn, Edith, Völkel, Tobias, and Schmitz, Jürgen. “Differentiation of adult CD133+ cells isolated from peripheral blood into cells with a neural phenotype”. MACS & more 7.1 (2003): 9-10.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680
Höchsmann, Matthias, Töller, Thomas, Giegerich, Robert, and Kurtz, Stefan. “Local similarity in RNA secondary structures.”. Proc IEEE Comput Soc Bioinform Conf 2 (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896394
Schmid, Karl J., Rosleff Sörensen, Thomas, Stracke, Ralf, Törjék, Ottó, Altmann, Thomas, Mitchell-Olds, Tom, and Weisshaar, Bernd. “Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana”. Genome Research 13.6 (2003): 1250-1257.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773184
Bartels, Frank Wilco, Baumgarth, Birgit, Anselmetti, Dario, Ros, Robert, and Becker, Anke. “Specific binding of the regulatory protein ExpG to promoter regions of the galactoglucan biosynthesis gene cluster of Sinorhizobium meliloti: a combined molecular biology and force spectroscopy investigation”. Journal of structural biology 143.2 (2003): 145-152.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch, Andreas, Pühler, Alfred, Kalinowski, Jörn, and Thierbach, G. “Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics”. JOURNAL OF BIOTECHNOLOGY 104.1-3 (2003): 27-40.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610285
Kluge, C, Lahr, J, Hanitzsch, M, Bolte, S, Golldack, Dortje, and Dietz, Karl-Josef. “New insight into the structure and regulation of the plant vacuolar H+-ATPase”. JOURNAL OF BIOENERGETICS AND BIOMEMBRANES 35.4 (2003): 377-388.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610494
Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, Brudno, M, Batzoglou, S, and Morgenstern, B. “AGenDA: homology-based gene prediction”. BIOINFORMATICS 19.12 (2003): 1575-1577.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610824
Beshay, U, Friehs, Karl, Azzam, AEM, and Flaschel, Erwin. “Cultivation of Dictyostelium discoideum in immobilized form by colonization of porous supports”. PROCESS BIOCHEMISTRY 38.11 (2003): 1521-1529.
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2003 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1610932
Schleef, M, Voß, Carsten, Schmidt, T, and Flaschel, Erwin. “Plasmid vector stability in production, application and storage”. JOURNAL OF GENE MEDICINE 5.3 (2003): S26-S26.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611245
Finkemeier, I, Kluge, C, Metwally, A, Georgi, M, Grotjohann, Norbert, and Dietz, Karl-Josef. “Alterations in Cd-induced gene expression under nitrogen deficiency in Hordeum vulgare”. PLANT CELL AND ENVIRONMENT 26.6 (2003): 821-833.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey, D. A., Pühler, Alfred, and Kalinowski, Jörn. “The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum”. JOURNAL OF BIOTECHNOLOGY 103.1 (2003): 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236
Wulf, A., Manthey, Katja, Doll, J., Perlick, A.M., Linke, Burkhard, Bekel, Thomas, Meyer, F., Franken, P., Küster, Helge, and Krajinski, F. “Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula”. Mol Plant Microbe Interact 16.4 (2003): 306-314.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609656
Voß, Carsten, Schmidt, T, Schleef, M, Friehs, Karl, and Flaschel, Erwin. “Production of supercoiled multimeric plasmid DNA for biopharmaceutical application”. JOURNAL OF BIOTECHNOLOGY 105.3 (2003): 205-213.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1866283
Cho, M., Chardonnens, A.N., and Dietz, Karl-Josef. “Differential heavy metal tolerance of Arabidopsis halleri and Arabidopsis thaliana: a leaf slice test”. New Phytologist 158.2 (2003): 287-293.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609315
Golyshin, P. N., Martins Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lünsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Pühler, Alfred, and Timmis, K. N. “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”. Journal of Biotechnology 106.2-3 (2003): 215-220.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
Hüser, Andrea T., Becker, Anke, Brune, Iris, Dondrup, Michael, Kalinowski, Jörn, Plassmeier, Jens, Pühler, Alfred, Wiegräbe, I., and Tauch, Andreas. “Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source”. JOURNAL OF BIOTECHNOLOGY 106.2-3 (2003): 269-286.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609485
Stephan, M, Beshay, U, Friehs, Karl, and Flaschel, Erwin. “Influence of medium composition on growth behaviour of Dictyostelium discoideum for cultivation on axenic media”. PROCESS BIOCHEMISTRY 39.3 (2003): 333-343.
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2003 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1863979
Oehm, Sebastian, Siessmeier, T., Buchholz, H.G., Bartenstein, P., and Uthmann, T. “A Knowledge-Based System for the Diagnosis of Alzheimer`s Disease”. Artificial intelligence in medicine. Ed. Michel Dojat, Elpida Keravnou, and Pedro Barahona. Berlin: Springer, 2003.Vol. 2780. Lecture Notes in Computer Science. 117-121.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864372
Hardin, S.C., Tang, G.-Q., Scholz, A., Holtgräwe, Daniela, Winter, H., and Huber, S.C. “Phosphorylation of sucrose synthase at serine 170: occurrence and possible role as a signal for proteolysis.”. Plant J 35.5 (2003): 588-603.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski, Jörn, Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., Goesmann, Alexander, Hartmann, M., Huthmacher, K., Kramer, R., Linke, Burkhard, McHardy, A. C., Meyer, F., Mockel, B., Pfefferle, W., Pühler, Alfred, Rey, D. A., Rückert, Christian, Rupp, O., Sahm, H., Wendisch, Volker F., Wiegrabe, I., and Tauch, Andreas. “The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins”. Journal of Biotechnology 104.1-3 (2003): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Report | PUB-ID: 1970477
Bergeron, Anne, and Stoye, Jens. On the Similarity of Sets of Permutations and its Applications to Genome Comparison. Bielefeld: Technische Fakultät der Universität Bielefeld, 2003. Forschungsberichte.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545
Nattkemper, Tim Wilhelm, Hermann, Thomas, Schubert, Walter, and Ritter, Helge. “Look & Listen: Sonification and Visualization of Multiparameter Micrographs”. Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE. Cancun, Mexico: IEEE, 2003.Vol. 2. 1311-1314.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612741
Nattkemper, Tim Wilhelm, Twellmann, Thorsten, Ritter, Helge, and Schubert, Walter. “Human vs. machine: evaluation of fluorescence micrographs”. Computers in Biology and Medicine 33.1 (2003): 31-43.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2002 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2394797
Julio Collado-Vides and Ralf Hofestädt, eds. Gene Regulation and Metabolism. Post-Genomic Computational Approaches. Cambridge, Mass.: MIT Press, 2002.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394824
Töpel, Thoralf, Mischke, U., Scheible, D., Trefz, F., and Hofestädt, Ralf. “RAMEDIS: Vernetzte Forschung am Beispiel angeborener Stoffwechselerkrankungen.”. Informatik, Biometrie und Epidemiologie in Medizin und Biologie 33.2 - 3 (2002): 79-80.
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2002 | Zeitschriftenaufsatz | PUB-ID: 2394831
Töpel, Thoralf, Scholz, Uwe, Mischke, U., Scheible, D., Hofestädt, R., and Trefz, F. “Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis”. Silico Biology 2 (2002): 36.
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2002 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2394795
Hofestädt, Ralf. “Bioinformatics”. Medical imaging informatics. Ed. Reinhold Haux. Stuttgart: Schattauer, 2002.Vol. 2002. Yearbook of Medical Informatics. 581-583.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378624
Hofestädt, Ralf, Kolchanov, N., and Reinitz, J. “Information and Simulation Systems for the Analysis of Gene Regulation and Metabolic Pathways”. In Silico Biology 2.2 (2002): 35.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378648
Freier, Andreas, Hofestädt, Ralf, Lange, Matthias, Scholz, Uwe, and Stephanik, Andreas. “BioDataServer: A SQL-based service for the online integration of life science data”. In Silico Biology 2.2 (2002): 37-57.
PUB | PubMed | Europe PMC
 
2002 | Monographie | Veröffentlicht | PUB-ID: 2376798
Hofestädt, Ralf, and Schnee, Roland. Studien- und Forschungsführer Bioinformatik. 1. Edition. Heidelberg: Spektrum Akademischer Verlag, 2002.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2394838
Freier, Andreas, Hofestädt, Ralf, and Lange, Matthias. “IIUDB: An Object-oriented System for Modelling, Integration and Analysis of Gene Controlled Metabolic Networks”. Proceedings of the Third International Conference on Bioinformatics and Genome Research. Ed. Nikolaj A. Kolčanov. 2002.Vol. 2. 123-125.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2394845
Hofestädt, Ralf, and Töpel, Thoralf. “Case-based Support of Information Retrieval and Analysis of Molecular Data”. Proceedings of the 15th IEEE Symposium on Computer-Based Medical Systems (CBMS 2002). Ed. Peter Kokol. Los Alamitos, Calif.: IEEE Computer Society, 2002. 129-133.
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2002 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376867
Freier, Andreas, Hofestädt, Ralf, and Töpel, Thoralf. “Invastigating the Effective Range of Agents by Using Integrative Modelling”. Handbook of Toxicogenomics: Strategies and Applications. Ed. Jürgen Borlak. 1. Edition. Weinheim: Wiley-VCH, 2002. 233-252.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1880734
Schierl, F., Friehs, Karl, Risse, Joe Max, and Flaschel, Erwin. “Herstellung von Mediumskomponenten aus mikrobieller Biomasse”. Freiberger Forschungshefte A 866 (2002): 112-124.
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2002 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2394806
Freier, Andreas, Hofestädt, Ralf, Lange, Matthias, and Scholz, Uwe. “Information Fusion and Metabolic Network Control”. Gene Regulation and Metabolism. Ed. Julio Collado-Vides and Ralf Hofestädt. Cambridge, Mass.: MIT Press, 2002. 49-84.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394818
Töpel, Thoralf, and Hofestädt, Ralf. “Architecture for Information Retrieval and Analysis of Integrated Molecular Data”. Medizinische Genetik 14.3 (2002): 315.
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2002 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1866383
Dietz, Karl-Josef, and Golldack, Dortje. “Crassulacean acid metabolism, a special case of pH regulation and H+-fluxes”. Handbook of plant growth: pH as master variable in plant growth. Ed. Z. Rengel. New York, NY: Marcel Dekker, 2002. 227-254.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614878
Frosch, SC, Becker, JD, Schultze, M, Schlesier, B, Kahmann, U, Pühler, Alfred, and Perlick, AM. “Characterization of NVf32: a narbonin-like nodulin of high abundance in Vicia faba L”. PLANT SCIENCE 162.3 (2002): 401-411.
PUB | DOI | WoS
 
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615097
Sauter, A, Dietz, Karl-Josef, and Hartung, W. “A possible stress physiological role of abscisic acid conjugates in root-to-shoot signalling”. PLANT CELL AND ENVIRONMENT 25.2 (2002): 223-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1613351
Schotter, Jörg, Kamp, Paul-Bertram, Becker, Anke, Pühler, Alfred, Brinkmann, D, Schepper, Willi, Brückl, Hubert, and Reiss, Günter. “A biochip based on magnetoresistive sensors”. IEEE TRANSACTIONS ON MAGNETICS 38.5 (2002): 3365-3367.
PUB | DOI | WoS
 
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
Tauch, Andreas, Götker, Susanne, Pühler, Alfred, Kalinowski, Jörn, and Thierbach, Georg. “The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100”. Plasmid 48.2 (2002): 117-129.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1613503
Nattkemper, Tim Wilhelm, Wersing, Heiko, Schubert, Walter, and Ritter, Helge. “A neural network architecture for automatic segmentation of fluorescence micrographs”. NEUROCOMPUTING 48 (2002): 357-367.
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