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3379 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932869
Naerdal, I.; Pfeifenschneider, J.; Brautaset, T.; Wendisch, V. F. (2019): Erratum: Methanol-based cadaverine production by genetically engineered Bacillus methanolicus strains Microbial Biotechnology,12:(1): 182-183.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2933685
Löwe, J.; Blifernez-Klassen, O.; Baier, T.; Wobbe, L.; Kruse, O.; Gröger, H. (2019): Type II flavoprotein monooxygenase PsFMO_A from the bacterium Pimelobacter sp. Bb-B catalyzes enantioselective Baeyer-Villiger oxidations with a relaxed cofactor specificity. Journal of biotechnology,294: 81-87.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933807
Mindt, M.; Heuser, M.; Wendisch, V. F. (2019): Xylose as preferred substrate for sarcosine production by recombinant Corynebacterium glutamicum Bioresource Technology,281: 135-142.
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2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning, A.; Lichtenstein, D.; Mentz, A.; Kalinowski, J.; Schmidt, F.; Poetz, O.; Lampen, A. (2019): A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro. In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. Springer. (392). S. S76-S77.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932707
Veldmann, K.; Minges, H.; Sewald, N.; Lee, J. - H.; Wendisch, V. F. (2019): Metabolic engineering of Corynebacterium glutamicum for the fermentative production of halogenated tryptophan Journal of Biotechnology,291: 7-16.
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2018 | Report | PUB-ID: 2942066
Panhorst, M.; Grotjohann, N. (2018): International group puzzle with national core groups and international expert groups. Development and evaluation of the project „Biotechnology in Our Life“.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929 OA
Stolze, Y.; Bremges, A.; Maus, I.; Pühler, A.; Sczyrba, A.; Schlüter, A. (2018): Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants Microbial Biotechnology,11:(4): 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777 OA
Celis, J. S.; Wibberg, D.; Ramírez-Portilla, C.; Rupp, O.; Sczyrba, A.; Winkler, A.; Kalinowski, J.; Wilke, T. (2018): Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts GigaScience,7:(7):giy075
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750 OA
Maus, I.; Rumming, M.; Bergmann, I.; Heeg, K.; Pohl, M.; Nettmann, E.; Jaenicke, S.; Blom, J.; Pühler, A.; Schlüter, A.; Sczyrba, A.; Klocke, M. (2018): Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors Biotechnology for Biofuels,11:(1):167
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723 OA
Meyer, F.; Hofmann, P.; Belmann, P.; Garrido-Oter, R.; Fritz, A.; Sczyrba, A.; McHardy, A. C. (2018): AMBER: Assessment of Metagenome BinnERs GigaScience,7:(6):giy069
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890 OA
Huang, L.; Krüger, J.; Sczyrba, A. (2018): Analyzing large scale genomic data on the cloud with Sparkhit Bioinformatics,34:(9): 1457-1465.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932961
Daniels, W.; Bouvin, J.; Busche, T.; Rückert, C.; Simoens, K.; Karamanou, S.; Van Mellaert, L.; Frojonsson, O. H.; Nicolai, B.; Economou, A.; Kalinowski, J.; Anne, J.; Bernaerts, K. (2018): Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein MICROBIAL CELL FACTORIES,17:(1):198
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider, O.; Simic, N.; Aachmann, F. L.; Rückert, C.; Kristiansen, K. A.; Kalinowski, J.; Jiang, Y.; Wang, L.; Jiang, C. - L.; Lale, R.; Zotchev, S. B. (2018): Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic FRONTIERS IN MICROBIOLOGY,9:3139
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz, F.; Helmdach, D.; Aschenbrenner, I.; Funck, N.; Wibberg, D.; Winkler, A.; Bohnen, F.; Kalinowski, J.; Mehlmer, N.; Brueck, T. B. (2018): Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY,6:200
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi, V.; Busche, T.; Preuss, T.; Kalinowski, J.; Bernhardt, J.; Antelmann, H. (2018): The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus FRONTIERS IN MICROBIOLOGY,9:3037
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932968
Rebets, Y.; Tsolis, K. C.; Gudmundsdottir, E. E.; Koepff, J.; Wawiernia, B.; Busche, T.; Bleidt, A.; Horbal, L.; Myronovskyi, M.; Ahmed, Y.; Wiechert, W.; Rueckert, C.; Hamed, M. B.; Bilyk, B.; Anne, J.; Fridjonsson, O.; Kalinowski, J.; Oldiges, M.; Economou, A.; Luzhetskyy, A. (2018): Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene Deletions FRONTIERS IN MICROBIOLOGY,9:3033
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker, B.; Brockington, S. F. (2018): Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes BMC Genomics,19:(1):980
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
Zurowietz, M.; Langenkämper, D.; Hosking, B.; Ruhl, H.; Nattkemper, T. W. (2018): MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration PLoS ONE,13:(11):e0207498
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064 OA
Brinkrolf, C.; Henke, N. A.; Ochel, L.; Pucker, B.; Kruse, O.; Lutter, P. (2018): Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA Journal of Integrative Bioinformatics,15:(3):20180018
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111 OA
Paulus, C.; Rebets, Y.; Zapp, J.; Rückert, C.; Kalinowski, J.; Luzhetskyy, A. (2018): New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme FRONTIERS IN MICROBIOLOGY,9:1959
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693 OA
Humble, E.; Dasmahapatra, K. K.; Martinez-Barrio, A.; Gregório, I.; Forcada, J.; Polikeit, A. - C.; Goldsworthy, S. D.; Goebel, M. E.; Kalinowski, J.; Wolf, J. B. W.; Hoffman, J. (2018): RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding G3: Genes|Genomes|Genetics,8:(8): 2709-2722.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930755
Crozet, P.; Navarro, F. J.; Willmund, F.; Mehrshahi, P.; Bakowski, K.; Lauersen, K. J.; Pérez-Pérez, M. - E.; Auroy, P.; Gorchs Rovira, A.; Sauret-Gueto, S.; Niemeyer, J.; Spaniol, B.; Theis, J.; Trösch, R.; Westrich, L. - D.; Vavitsas, K.; Baier, T.; Hübner, W.; de Carpentier, F.; Cassarini, M.; Danon, A.; Henri, J.; Marchand, C. H.; de Mia, M.; Sarkissian, K.; Baulcombe, D. C.; Peltier, G.; Crespo, J. L.; Kruse, O.; Jensen, P. E.; Schroda, M.; Smith, A. G.; Lemaire, S. D. (2018): Birth of a photosynthetic chassis. A MoClo toolkit enabling synthetic biology in the microalga Chlamydomonas reinhardtii ACS Synthetic Biology,7:(9): 2074-2086.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Ribicic, D.; McFarlin, K. M.; Netzer, R.; Brakstad, O. G.; Winkler, A.; Throne-Holst, M.; Storseth, T. R. (2018): Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis BMC MICROBIOLOGY,18:(1):83
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593 OA
Linden, M.; Prochazka, M.; Lappalainen, I.; Bucik, D.; Vyskocil, P.; Kuba, M.; Silén, S.; Belmann, P.; Sczyrba, A.; Newhouse, S.; Matyska, L.; Nyrönen, T. (2018): Common ELIXIR Service for Researcher Authentication and Authorisation F1000Research,7:1199
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930465 OA
Sgobba, E.; Blöbaum, L.; Wendisch, V. F. (2018): Production of food and feed additives from non-food-competing feedstocks. Valorizing N-acetylmuramic acid for amino acid and carotenoid fermentation with Corynebacterium glutamicum Frontiers in Microbiology,9:2046
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930292 OA
Mindt, M.; Risse, J. M.; Gruß, H.; Sewald, N.; Eikmanns, B. J.; Wendisch, V. F. (2018): One-step process for production of N-methylated amino acids from sugars and methylamine using recombinant Corynebacterium glutamicum as biocatalyst Scientific Reports,8:(1):12895
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford, C. M.; Dymek, S.; Kerkhoff, D.; März, C.; Schmidt, O.; Edich, M.; Droste, J.; Pucker, B.; Rückert, C.; Kalinowski, J. (2018): Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications Journal of Biological Engineering,12:(1):13
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930264
Krell, V.; Jakobs-Schönwandt, D.; Persicke, M.; Patel, A. (2018): Endogenous arabitol and mannitol improve shelf life of encapsulated Metarhizium brunneum WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY,34:(8):108
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920989
Perez, F.; Wendisch, V. F. (2018): Transport and metabolic engineering of the cell factory Corynebacterium glutamicum FEMS Microbiology Letters,365:(16):fny166
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921210
Lauersen, K. J.; Wichmann, J.; Baier, T.; Kampranis, S. C.; Pateraki, I.; Lindberg Møller, B.; Kruse, O. (2018): Phototrophic production of heterologous diterpenoids and a hydroxy-functionalized derivative from Chlamydomonas reinhardtii Metabolic Engineering,49: 116-127.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229 OA
Schneider, O.; Ilic-Tomic, T.; Rückert, C.; Kalinowski, J.; Gencic, M. S.; Zivkovic, M. Z.; Stankovic, N.; Radulovic, N. S.; Vasiljevic, B.; Nikodinovic-Runic, J.; Zotchev, S. B. (2018): Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10 FRONTIERS IN MICROBIOLOGY,9:10
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2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2931825
Baier, T.; Kros, D.; Feiner, R.; Lauersen, K. J.; Müller, K.; Kruse, O. (2018): Engineered Fusion Proteins for Efficient Protein Secretion and Purification of a Human Growth Factor from the Green Microalga Chlamydomonas reinhardtii ACS Synthetic Biology,7:(11): 2547-2557.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940 OA
Kibret, M.; Guerrero-Garzon, J. F.; Urban, E.; Zehl, M.; Wronski, V. - K.; Rückert, C.; Busche, T.; Kalinowski, J.; Rollinger, J. M.; Abate, D.; Zotchev, S. B. (2018): Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry FRONTIERS IN MICROBIOLOGY,9:13
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943 OA
Blifernez-Klassen, O.; Chaudhari, S.; Klassen, V.; Wördenweber, R.; Steffens, T.; Cholewa, D.; Niehaus, K.; Kalinowski, J.; Kruse, O. (2018): Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation PLOS ONE,13:(6):e0198976
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679 OA
Busche, T.; Tsolis, K. C.; Koepff, J.; Rebets, Y.; Rückert, C.; Hamed, M. B.; Bleidt, A.; Wiechert, W.; Lopatniuk, M.; Yousra, A.; Anne, J.; Karamanou, S.; Oldiges, M.; Kalinowski, J.; Luzhetskyy, A.; Economou, A. (2018): Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion FRONTIERS IN MICROBIOLOGY,9:12
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Adamek, M.; Alanjary, M.; Sales-Ortells, H.; Goodfellow, M.; Bull, A. T.; Winkler, A.; Wibberg, D.; Kalinowski, J.; Ziemert, N. (2018): Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species BMC GENOMICS,19:(1):15
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931573 OA
Mindt, M.; Walter, T.; Risse, J. M.; Wendisch, V. F. (2018): Fermentative production of N-methylglutamate from glycerol by recombinant Pseudomonas putida Frontiers in Bioengineering and Biotechnology,6:159
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931468 OA
Perez, F.; Jorge, J.; Dreyszas, A.; Risse, J. M.; Wendisch, V. F. (2018): Efficient production of the dicarboxylic acid glutarate by Corynebacterium glutamicum via a novel synthetic pathway Frontiers in Microbiology,9:2589
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933306
Margos, G.; Gofton, A.; Wibberg, D.; Dangel, A.; Marosevic, D.; Loh, S. - M.; Oskam, C.; Fingerle, V. (2018): The genus Borrelia reloaded PLOS ONE,13:(12):e0208432
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330 OA
Robledo, M.; Schlueter, J. - P.; Loehr, L. O.; Linne, U.; Albaum, S.; Jimenez-Zurdo, J. I.; Becker, A. (2018): An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA FRONTIERS IN MICROBIOLOGY,9:14
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133 OA
Ruwe, M.; Rückert, C.; Kalinowski, J.; Persicke, M. (2018): Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum Frontiers in Microbiology,9:916
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169 OA
Salto, I. P.; Torres Tejerizo, G.; Wibberg, D.; Pühler, A.; Schlüter, A.; Pistorio, M. (2018): Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats Scientific Reports,8:(1):7783
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920275 OA
Sommermann, L.; Geistlinger, J.; Wibberg, D.; Deubel, A.; Zwanzig, J.; Babin, D.; Schlüter, A.; Schellenberg, I. (2018): Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing PLOS ONE,13:(4):e0195345
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920311
Abdali, N.; Younas, F.; Mafakheri, S.; Pothula, K. R.; Kleinekathoefer, U.; Tauch, A.; Benz, R. (2018): Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109 BMC BIOCHEMISTRY,19:(1):18
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984 OA
Neubauer, P.; Widmann, C.; Wibberg, D.; Schröder, L.; Frese, M.; Kottke, T.; Kalinowski, J.; Niemann, H.; Sewald, N. (2018): A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination PLOS ONE,13:(5):e0196797
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346 OA
Hagenfeld, D.; Koch, R.; Jünemann, S.; Prior, K.; Harks, I.; Eickholz, P.; Hoffmann, T.; Kim, T. - S.; Kocher, T.; Meyle, J.; Kaner, D.; Schlagenhauf, U.; Ehmke, B.; Harmsen, D. (2018): Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis PLOS ONE,13:(4):e0195534
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919149 OA
Henke, N. A.; Wichmann, J.; Baier, T.; Frohwitter, J.; Lauersen, K. J.; Risse, J. M.; Peters-Wendisch, P.; Kruse, O.; Wendisch, V. F. (2018): Patchoulol production with metabolically engineered Corynebacterium glutamicum Genes,9:(4):219
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Tsolis, K. C.; Tsare, E. - P.; Orfanoudaki, G.; Busche, T.; Kanaki, K.; Ramakrishnan, R.; Rousseau, F.; Schymkowitz, J.; Rückert, C.; Kalinowski, J.; Anne, J.; Karamanou, S.; Klapa, M. I.; Economou, A. (2018): Comprehensive subcellular topologies of polypeptides in Streptomyces MICROBIAL CELL FACTORIES,17:(1):12
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969 OA
Busche, T.; Novakova, R.; Al'Dilaimi, A.; Homerova, D.; Feckova, L.; Rezuchova, B.; Mingyar, E.; Csolleiova, D.; Bekeova, C.; Winkler, A.; Sevcikova, B.; Kalinowski, J.; Kormanec, J.; Rückert, C. (2018): Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin Genome Announcements,6:(9):e00103-18
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz, T.; Stoye, J.; Dörr, D. (2018): GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data BMC Genomics,19:(Suppl. 5):308
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