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3224 Publikationen

2018 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2930936
Microencapsulation as a tool to produce multicellular tumor spheroids
Storck J L, Homburg SV, Feldhans T, Bednarz H, Niehaus K, Patel A (2018)
In: Special Issue: ProcessNet‐Jahrestagung und 33. DECHEMA‐Jahrestagung der Biotechnologen 2018. Chemie Ingenieur Technik, 90(9). Wiley: 1214-1214.
PUB | Dateien verfügbar | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931502
Conjugated Polymers as a New Class of Dual-Mode Matrices for MALDI Mass Spectrometry and Imaging
Horatz K, Giampa M, Karpov Y, Sahre K, Bednarz H, Kiriy A, Voit B, Niehaus K, Hadjichristidis N, Michels DL, Lissel F (2018)
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 140(36): 11416-11423.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions
Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B (2018)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(19): 8419-8428.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920989
Transport and metabolic engineering of the cell factory Corynebacterium glutamicum
Perez F, Wendisch VF (2018)
FEMS Microbiology Letters 365(16): fny166.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930755
Birth of a photosynthetic chassis. A MoClo toolkit enabling synthetic biology in the microalga Chlamydomonas reinhardtii
Crozet P, Navarro FJ, Willmund F, Mehrshahi P, Bakowski K, Lauersen KJ, Pérez-Pérez M-E, Auroy P, Gorchs Rovira A, Sauret-Gueto S, Niemeyer J, et al. (2018)
ACS Synthetic Biology 7(9): 2074-2086.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Preprint | Veröffentlicht | PUB-ID: 2931478 PUB | DOI | Download (ext.)
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18: 83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase
Alkhateeb R, Vorhölter F-J, Steffens T, Rückert C, Ortseifen V, Hublik G, Niehaus K, Pühler A (2018)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(15): 6613-6625.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2930473
Carotenoid Production by Recombinant Corynebacterium glutamicum: Strain Construction, Cultivation, Extraction, and Quantification of Carotenoids and Terpenes.
Henke NA, Frohwitter J, Peters-Wendisch P, Wendisch VF (2018)
In: Microbial Carotenoids. Barreiro C, Barredo J-L (Eds); Methods in Molecular Biology, 1852. New York: Humana Press: 127-141.
PUB | DOI | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2018)
JOURNAL OF COMPUTATIONAL BIOLOGY 25(7): 825-836.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis
Ludwig P, Sevin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M (2018)
MICROBIOLOGY-SGM 164(6): 908-919.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918160
Biotechnological production of mono- and diamines using bacteria: recent progress, applications and perspectives
Wendisch VF, Mindt M, Perez F (2018)
Appl Microbiol Biotechnol 102(8): 3583-3594.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H
Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
BMC GENOMICS 19: 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039
Strategies for Tackling the Class Imbalance Problem in Marine Image Classification
Langenkämper D, van Kevelaer R, Nattkemper TW (Accepted)
Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing.
PUB | PDF
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19: 15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11
Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)
Antimicrobial Agents and Chemotherapy 62(5): e00212-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification
Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
JOURNAL OF BIOTECHNOLOGY 272: 40-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920311
Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109
Abdali N, Younas F, Mafakheri S, Pothula KR, Kleinekathoefer U, Tauch A, Benz R (2018)
BMC BIOCHEMISTRY 19: 18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum
Schwentner A, Feith A, Muench E, Busche T, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
METABOLIC ENGINEERING 47: 31-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Pan-genome Storage and Analysis Techniques
Zekic T, Holley G, Stoye J (2018)
In: Comparative Genomics. Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 29-53.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919299
Micro-organisms growing on rapeseed during storage affect the profile of volatile compounds of virgin rapeseed oil
Wagner C, Bonte A, Bruehl L, Niehaus K, Bednarz H, Matthaeus B (2018)
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 98(6): 2147-2155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus
Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
ANTIOXIDANTS & REDOX SIGNALING: 22.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920334
Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Comprehensive subcellular topologies of polypeptides in Streptomyces
Tsolis KC, Tsare E-P, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anne J, et al. (2018)
MICROBIAL CELL FACTORIES 17: 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii
Cerletti M, Paggi R, Troetschel C, Celeste Ferrari M, Guevara CR, Albaum S, Poetsch A, De Castro R (2018)
JOURNAL OF PROTEOME RESEARCH 17(3): 1158-1171.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
ZEITSCHRIFT FÜR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES 73(1-2): 49-57.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Characterization of the Actinonin Biosynthetic Gene Cluster
Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
CHEMBIOCHEM 19(11): 1189-1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Family-Free Genome Comparison
Dörr D, Feijão P, Stoye J (2018)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 331-342.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea
Fleming EJ, Woyke T, Donatello AR, Kuypers MMM, Sczyrba A, Littmann S, Emerson D (2018)
Applied and Environmental Microbiology 84(9): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920701 PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts
Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, et al. (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.
Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, et al. (2018)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, et al. (2018)
ACS Synthetic Biology 7: 132–144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, et al. (2018)
Plant and Soil 422(1-2): 467-478.
PUB | DOI | WoS
 
2018 | Herausgeber Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Comparative Genomics: Methods and Protocols
Setubal JC, Stadler P, Stoye J (Eds) (2018) Methods in Molecular Biology; 1704.
New York: Springer Verlag.
PUB
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2921257
Synthetic Methylotrophy: Past, Present, and Future
Heux S, Brautaset T, Vorholt JA, Wendisch VF, Portais J-C (2018)
In: Methane Biocatalysis: Paving the Way to Sustainability. Kalyuzhnaya MG, Xing X-H (Eds); Cham: Springer: 133-152.
PUB | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA)
Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
METALLOMICS 10(5): 722-734.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920704
Molecular Epidemiology of Multidrug-Resistant Bacteria Isolated from Libyan and Syrian Patients with War Injuries in Two Bundeswehr Hospitals in Germany
Frickmann H, Koeller T, Hagen RM, Ebert K-P, Mueller M, Wenzel W, Gatzer R, Schotte U, Binder A, Skusa R, Warnke P, et al. (2018)
EUROPEAN JOURNAL OF MICROBIOLOGY AND IMMUNOLOGY 8(1): 1-11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Flexible metagenome analysis using the MGX framework
Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
Microbiome 6: 76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet
Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
Journal of Experimental Botany 68(21-22): 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831
Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
Genome Announcements 5(16).
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492 PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.
Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
Genome Announc 5(20).
PUB | DOI | WoS | PubMed | Europe PMC
 

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