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3481 Publikationen

2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950258 OA
Henke, Nadja Alina, Krahn, Irene, and Wendisch, Volker F. “Improved plasmid-based inducible and constitutive gene expression in Corynebacterium glutamicum”. Microorganisms 9.1 (2021): 204.
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946303
Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. “Computing the rearrangement distance of natural genomes”. Journal of Computational Biology (2021).
PUB | DOI | PubMed | Europe PMC
 
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292
Blifernez-Klassen, Olga, Klassen, Viktor, Wibberg, Daniel, Cebeci, Enis, Henke, Christian, Rückert, Christian, Chaudhari, Swapnil, Rupp, Oliver, Blom, Jochen, Winkler, Anika, Al-Dilaimi, Arwa, Goesmann, Alexander, Sczyrba, Alexander, Kalinowski, Jörn, Bräutigam, Andrea, and Kruse, Olaf. “Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia”. Scientific Reports 11.1 (2021): 1726.
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949462
Freudenberg, Robert, Baier, Thomas, Einhaus, Alexander, Wobbe, Lutz, and Kruse, Olaf. “High cell density cultivation enables efficient and sustainable recombinant polyamine production in the microalga Chlamydomonas reinhardtii”. Bioresource Technology 323 (2021): 124542.
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2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2949664
Prell, Carina, Burgardt, Arthur, Meyer, Florian, and Wendisch, Volker F. “Fermentative production of ʟ-2-hydroxyglutarate by engineered Corynebacterium glutamicum via pathway extension of ʟ-lysine biosynthesis”. Frontiers in Bioengineering and Biotechnology (Accepted).
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2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2949681
Vortmann, Marina, Stumpf, Anna K., Sgobba, Elvira, Dierks-Hofmeister, Mareike E., Krehenbrink, Martin, Wendisch, Volker F., Philipp, Bodo, and Moerschbacher, Bruno M. “A bottom-up approach towards a bacterial consortium for the biotechnological conversion of chitin to L-lysine”. Applied Microbiology and Biotechnology (Accepted).
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945991
Sundermann, Linda K., Wintersinger, Jeff, Rätsch, Gunnar, Stoye, Jens, and Morris, Quaid. “Reconstructing Tumor Evolutionary Histories and Clone Trees in Polynomial-time with SubMARine”. PLOS Computational Biology 17.1 (2021): e1008400.
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949947
Perez, Fernando, Burgardt, Arthur, Kallmann, Dina R., Wendisch, Volker F., and Bar, Nadav. “Dynamic co-cultivation process of Corynebacterium glutamicum strains for the fermentative production of riboflavin”. Fermentation 7.1 (2021): 11.
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
Nilsson, Juliet F, Castellani, Lucas G, Draghi, Walter O, Mogro, Ezequiel G, Wibberg, Daniel, Winkler, Anika, Hansen, L H, Schlüter, Andreas, Pühler, Alfred, Kalinowski, Jörn, Torres Tejerizo, Gonzalo A, and Pistorio, Mariano. “Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress”. FEMS Microbiology Ecology 97.1 (2021): fiaa235.
PUB | DOI | PubMed | Europe PMC
 
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949074
Thiedig, Katharina, Weisshaar, Bernd, and Stracke, Ralf. “Functional and evolutionary analysis of the Arabidopsis 4R-MYB protein SNAPc4 as part of the SNAP complex”. Plant Physiology (2021).
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2020 | Wissenschaftliche Software | PUB-ID: 2946346
Haupka, Carsten. Generating CRISPR libraries. Bielefeld University, 2020.
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2020 | Wissenschaftliche Software | PUB-ID: 2946347
Haupka, Carsten. Codon harmonization. Bielefeld University, 2020.
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2020 | Report | PUB-ID: 2944669
Glöckner, Frank Oliver, Diepenbroek, Michael, Felden, Janine, Güntsch, Anton, Stoye, Jens, Overmann, Jörg, Wimmers, Klaus, Kostadinov, Ivaylo, Yahyapour, Ramin, Müller, Wolfgang, Scholz, Uwe, Triebel, Dagmar, Frenzel, Mark, Gemeinholzer, Birgit, Goesmann, Alexander, König-Ries, Birgitta, Bonn, Aletta, and Seeger, Bernhard. NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI) : Proposal. Zenodo, 2020.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948972
Setubal, Joao C., Stoye, Jens, and Dutilh, Bas E. “Editorial: Computational Methods for Microbiome Analysis”. Frontiers in Genetics 11 (2020): 623897.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945026 OA
Henke, Nadja Alina, Austermeier, Sophie, Grothaus, Isabell L., Götker, Susanne, Persicke, Marcus, Peters-Wendisch, Petra, and Wendisch, Volker F. “Corynebacterium glutamicum CrtR and its orthologs in actinobacteria: conserved function and application as genetically encoded biosensor for detection of geranylgeranyl pyrophosphate”. International Journal of Molecular Sciences 21.15 (2020): 5482.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943451 OA
Hennig, Guido, Haupka, Carsten, Fernandes de Brito, Luciana, Rückert, Christian, Cahoreau, Edern, Heux, Stéphanie, and Wendisch, Volker F. “Methanol-essential growth of Corynebacterium glutamicum: Adaptive laboratory evolution overcomes limitation due to methanethiol assimilation pathway”. International Journal of Molecular Sciences 21.10 (2020): 3617.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941820 OA
Pfeifenschneider, Johannes, Markert, Benno, Stolzenberger, Jessica, Brauatset, Trygve, and Wendisch, Volker F. “Transaldolase in Bacillus methanolicus: Biochemical Characterization and Biological Role in Ribulose Monophosphate Cycle”. BMC Microbiology 20 (2020): 63.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944633 OA
Schenk, Janina, Höss, Sebastian, Brinke, Marvin, Kleinbölting, Nils, Brüchner-Hüttemann, Henrike, and Traunspurger, Walter. “Nematodes as bioindicators of polluted sediments using metabarcoding and microscopic taxonomy”. Environment International 143 (2020): 105922.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597 OA
Maus, Irena, Tubbesing, Tom Jonas, Wibberg, Daniel, Heyer, Robert, Hassa, Julia, Tomazetto, Geizecler, Huang, Liren, Bunk, Boyke, Spröer, Cathrin, Benndorf, Dirk, Zverlov, Vladimir, Pühler, Alfred, Klocke, Michael, Sczyrba, Alexander, and Schlüter, Andreas. “The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses”. Microorganisms 8.12 (2020): 2024.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949440 OA
Braun, Robert, Schönberger, Nora, Vinke, Svenja, Lederer, Franziska, Kalinowski, Jörn, and Pollmann, Katrin. “Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding Motifs”. Viruses 12.12 (2020): 1360.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076 OA
Sielemann, Katharina, Elbeck, Zaher, Gärtner, Anna, Brodehl, Andreas, Stanasiuk, Caroline, Fox, Henrik, Paluszkiewicz, Lech, Tiesmeier, Jens, Wlost, Stefan, Gummert, Jan, Albaum, Stefan, Sielemann, Janik, Knöll, Ralph, and Milting, Hendrik. “Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes”. Genes 11.12 (2020): 1430.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949125 OA
Höving, Anna L., Sielemann, Katharina, Greiner, Johannes, Kaltschmidt, Barbara, Knabbe, Cornelius, and Kaltschmidt, Christian. “Transcriptome Analysis Reveals High Similarities between Adult Human Cardiac Stem Cells and Neural Crest-Derived Stem Cells”. Biology 9.12 (2020): 435.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948740 OA
Fernandes de Brito, Luciana, Gil Lopez, Marina, Straube, Lucas, Passaglia, Luciane, and Wendisch, Volker F. “Inorganic phosphate solubilization by rhizosphere bacterium Paenibacillus sonchi: gene expression and physiological functions”. Frontiers in Microbiology 11 (2020): 588605.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945429
Kugler, Pierre, Fröhlich, Deborah, and Wendisch, Volker F. “Development of a Biosensor for Crotonobetaine-CoA-Ligase Screening based on Elucidation of the Escherichia coli Carnitine Metabolism”. ACS Synthetic Biology 9 (2020): 2460–2471.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949180 OA
Walter, Tatjana, Veldmann, Kareen, Götker, Susanne, Busche, Tobias, Rückert, Christian, Kashkooli, Arman Beyraghdar, Paulus, Jannik, Cankar, Katarina, and Wendisch, Volker F. “Physiological response of Corynebacterium glutamicum to indole”. Microorganisms 8 (2020): 1945.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949766
Kim, Bu-Yeon, Jung, Hye-Bin, Lee, Ji-Yeong, Ferrer, Lenny, Purwanto, Henry Syukur, and Lee, Jin Ho. “Production of 4-Hydroxybenzyl Alcohol by Metabolically Engineered Corynebacterium glutamicum”. Microbiology and Biotechnology Letters 48.4 (2020): 506-514.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948762 OA
Graf, Michaela, Haas, Thorsten, Teleki, Attila, Feith, Andre, Cerff, Martin, Wiechert, Wolfgang, Nöh, Katharina, Busche, Tobias, Kalinowski, Jörn, and Takors, Ralf. “Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions.”. Frontiers in Bioengineering and Biotechnology 8 (2020): 584614.
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948756
Fritsch, Verena Nadin, Loi, Vu Van, Busche, Tobias, Tung, Quach Ngoc, Lill, Roland, Horvatek, Petra, Wolz, Christiane, Kalinowski, Jörn, and Antelmann, Haike. “The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureus”. Free radical biology & medicine (2020).
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2020 | Preprint | Veröffentlicht | PUB-ID: 2943037
Sielemann, Katharina, Weisshaar, Bernd, and Pucker, Boas. “Reference-based QUantification Of gene Dispensability (QUOD)”. bioRxiv (2020).
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2020 | Datenpublikation | PUB-ID: 2946079 OA
Sielemann, Katharina, Weisshaar, Bernd, and Pucker, Boas. Reference-based QUantification Of gene Dispensability (QUOD) - test dataset. Bielefeld University, 2020.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe, Daniela, Rosleff Soerensen, Thomas, Hausmann, Ludger, Pucker, Boas, Viehöver, Prisca, Töpfer, Reinhard, and Weisshaar, Bernd. “A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping”. Frontiers in Plant Science 11 (2020): 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu, Christian, Pucker, Boas, Viehöver, Prisca, Albach, Dirk C., and Weisshaar, Bernd. “High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing”. Genes 11.3 (2020): 274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker, Boas, Siadjeu, Christian, Viehöver, Prisca, Albach, Dirk, and Weisshaar, Bernd. Dioscorea dumetorum genome sequence v1.0. Bielefeld University, 2020.
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2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert, Hanna, Rempel, Andreas, and Pucker, Boas. Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert, Hanna, Rempel, Andreas, and Pucker, Boas. “Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data”. Plants 9.4 (2020): 439.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
Busche, Mareike, Pucker, Boas, Viehöver, Prisca, Weisshaar, Bernd, and Stracke, Ralf. “Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2”. G3: Genes|Genomes|Genetics 10.1 (2020): 37-42.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
2020 | Datenpublikation | PUB-ID: 2941437 OA
Frommer, Bianca, Holtgräwe, Daniela, and Weisshaar, Bernd. Dataset describing RNA editing sites in the mitochondrial genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942459 OA
Frommer, Bianca, Holtgräwe, Daniela, Hausmann, Ludger, Viehöver, Prisca, Huettel, Bruno, Töpfer, Reinhard, and Weisshaar, Bernd. “Genome Sequences of Both Organelles of the Grapevine Rootstock Cultivar ‘Börner’”. Microbiology Resource Announcements 9.15 (2020): e01471-19.
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2020 | Datenpublikation | PUB-ID: 2941430 OA
Frommer, Bianca, Holtgräwe, Daniela, and Weisshaar, Bernd. Dataset describing RNA editing sites in the chloroplast genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945521 OA
Kuhl, Martin, Gläser, Lars, Rebets, Yuriy, Rückert, Christian, Sarkar, Namrata, Hartsch, Thomas, Kalinowski, Jörn, Luzhetskyy, Andriy, and Wittmann, Christoph. “Microparticles globally reprogram Streptomyces albus toward accelerated morphogenesis, streamlined carbon core metabolism and enhanced production of the antituberculosis polyketide pamamycin”. Biotechnology and Bioengineering (2020).
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945474 OA
Hemmerich, Johannes, Labib, Mohamed, Steffens, Carmen, Reich, Sebastian J., Weiske, Marc, Baumgart, Meike, Rückert, Christian, Ruwe, Matthias, Siebert, Daniel, Wendisch, Volker F., Kalinowski, Jörn, Wiechert, Wolfgang, and Oldiges, Marco. “Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion”. Microbial Biotechnology 13.6 (2020): 2020-2031.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946320 OA
Droste, Julian, Kulisch, Martin, Wolf, Timo, Schaffert, Lena, Schneiker-Bekel, Susanne, Pühler, Alfred, and Kalinowski, Jörn. “A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110”. Applied microbiology and biotechnology 104 (2020): 9283–9294.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949422
Guerrero-Garzon, Jaime Felipe, Madland, Eva, Zehl, Martin, Singh, Madhurendra, Rezaei, Shiva, Aachmann, Finn L, Courtade, Gaston, Urban, Ernst, Rückert, Christian, Busche, Tobias, Kalinowski, Jörn, Cao, Yan-Ru, Jiang, Yi, Jiang, Cheng-Lin, Selivanova, Galina, and Zotchev, Sergey B. “Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin”. iScience 23.12 (2020): 101785.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948721 OA
Ortseifen, Vera, Viefhues, Martina, Wobbe, Lutz, and Grünberger, Alexander. “Microfluidics for Biotechnology: Bridging Gaps to Foster Microfluidic Applications”. Frontiers in Bioengineering and Biotechnology 8 (2020): 589074.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948936
Stadler, Rudolf, Hain, Carsten, Cieslak, Cassandra, and Stranzenbach, Rene. “Molecular pathogenesis of cutaneous lymphoma-Future directions”. Experimental Dermatology (2020).
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946331
Sahin, Mikail, Neumann, Judith Martha, Riefke, Bjoern, Bednarz, Hanna, Gutberlet, Katrin, Giampa, Marco, Niehaus, Karsten, and Fatangare, Amol. “Spatial evaluation of long-term metabolic changes induced by cisplatin nephrotoxicity.”. Toxicology letters 334 (2020): 36-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948401 OA
Moore, Marten, Wesemann, Corinna, Gossmann, Nikolaj, Sahm, Arne, Krüger, Jan, Sczyrba, Alexander, and Dietz, Karl-Josef. “ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom”. BMC Bioinformatics 21.1 (2020): 490.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949080 OA
Droste, Julian, Ortseifen, Vera, Schaffert, Lena, Persicke, Marcus, Schneiker-Bekel, Susanne, Pühler, Alfred, and Kalinowski, Jörn. “The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.”. BMC genomics 21 (2020): 818.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945217 OA
Gurwitz, Kim T, Singh Gaur, Prakash, Bellis, Louisa J, Larcombe, Lee, Alloza, Eva, Balint, Balint Laszlo, Botzki, Alexander, Dimec, Jure, Dominguez Del Angel, Victoria, Fernandes, Pedro L, Korpelainen, Eija, Krause, Roland, Kuzak, Mateusz, Le Pera, Loredana, Leskosek, Brane, Lindvall, Jessica M, Marek, Diana, Martinez, Paula A, Muyldermans, Tuur, Nygard, Stale, Palagi, Patricia M, Peterson, Hedi, Psomopoulos, Fotis, Spiwok, Vojtech, van Gelder, Celia W G, Via, Allegra, Vidak, Marko, Wibberg, Daniel, Morgan, Sarah L, and Rustici, Gabriella. “A framework to assess the quality and impact of bioinformatics training across ELIXIR.”. PLoS computational biology 16.7 (2020): e1007976.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941708
Perozeni, Federico, Cazzaniga, Stefano, Baier, Thomas, Zanoni, Francesca, Zoccatelli, Gianni, Lauersen, Kyle J., Wobbe, Lutz, and Ballottari, Matteo. “Turning a green alga red: engineering astaxanthin biosynthesis by intragenic pseudogene revival in Chlamydomonas reinhardtii”. Plant biotechnology journal (2020): pbi.13364.
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