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3416 Publikationen

2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945026
Henke, N.A., Austermeier, S., Grothaus, I.L., Götker, S., Persicke, M., Peters-Wendisch, P. & Wendisch, V.F. (2020). Corynebacterium glutamicum CrtR and its orthologs in actinobacteria: conserved function and application as genetically encoded biosensor for detection of geranylgeranyl pyrophosphate. International Journal of Molecular Sciences, 21: 5482. MDPI. doi:10.3390/ijms21155482.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945180
Baier, T., Jacobebbinghaus, N., Einhaus, A., Lauersen, K.J. & Kruse, O. (2020). Introns mediate post-transcriptional enhancement of nuclear gene expression in the green microalga Chlamydomonas reinhardtii. PLOS Genetics, 16(7): e1008944. Public Library of Science (PLoS). doi:10.1371/journal.pgen.1008944.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939618 OA
Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P. & Stoye, J. (2020). Finding all maximal perfect haplotype blocks in linear time. Algorithms for Molecular Biology, 15: 2. BioMed Central.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943451 OA
Hennig, G., Haupka, C., Fernandes de Brito, L., Rückert, C., Cahoreau, E., Heux, S. & Wendisch, V.F. (2020). Methanol-essential growth of Corynebacterium glutamicum: Adaptive laboratory evolution overcomes limitation due to methanethiol assimilation pathway. International Journal of Molecular Sciences (IJMS) , 21(10): 3617. MDPI. doi:10.3390/ijms21103617.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943755 OA
Walter, T., Al Medani, N., Burgardt, A., Cankar, K., Ferrer, L., Kerbs, A., Lee, J.-H., Mindt, M., Risse, J.M. & Wendisch, V.F. (2020). Fermentative N-methylanthranilate production by engineered Corynebacterium glutamicum. Microorganisms, 8: 866. MDPI. doi:10.3390/microorganisms8060866.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943789
Grigoriou, S., Kugler, P., Kulcinskaja, E., Walter, F., King, J., Hill, P., Wendisch, V.F. & O'Reilly, E. (2020). Development of a Corynebacterium glutamicum bio-factory for self-sufficient transaminase reactions. Green Chemistry, 22, 4128-4132. Royal Society of Chemistry (RSC). doi:10.1039/D0GC01432J.
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945007
Schenk, J., Höss, S., Brinke, M., Kleinbölting, N., Brüchner-Hüttemann, H. & Traunspurger, W. (2020). Dataset supporting the use of nematodes as bioindicators of polluted sediments. Data in Brief: 106087. Elsevier BV. doi:10.1016/j.dib.2020.106087.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941687 OA
Mindt, M., Walter, T., Kugler, P. & Wendisch, V.F. (2020). Microbial engineering for production of N-functionalized amino acids and amines. Biotechnology Journal , 15(7): 1900451. Wiley. doi:10.1002/biot.201900451.
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2020 | Report | PUB-ID: 2944669
Glöckner, F.O., Diepenbroek, M., Felden, J., Güntsch, A., Stoye, J., Overmann, J., Wimmers, K., Kostadinov, I., Yahyapour, R., Müller, W., Scholz, U., Triebel, D., Frenzel, M., Gemeinholzer, B., Goesmann, A., König-Ries, B., Bonn, A. & Seeger, B. (2020). NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI) : Proposal. Zenodo. doi:10.5281/ZENODO.3943645.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944633 OA
Schenk, J., Höss, S., Brinke, M., Kleinbölting, N., Brüchner-Hüttemann, H. & Traunspurger, W. (2020). Nematodes as bioindicators of polluted sediments using metabarcoding and microscopic taxonomy. Environment International, 143: 105922. Elsevier . doi:10.1016/j.envint.2020.105922.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940492 OA
Epping, M.S., Wedde, S., Grundmann, A., Radukic, M., Gröger, H., Hummel, A. & Viefhues, M. (2020). Dielectrophoretic analysis of the impact of isopropyl alcohol on the electric polarisability of Escherichia coli whole-cells. Analytical Bioanalytical Chemistry, 412, 3925–3933. Springer Nature. doi:10.1007/s00216-020-02451-9.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942996 OA
Schaffert, L., Schneiker-Bekel, S., Gierhake, J., Droste, J., Persicke, M., Rosen, W., Pühler, A. & Kalinowski, J. (2020). Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110. Applied Microbiology and Biotechnology, 104, 5395–5408. Springer Nature. doi:10.1007/s00253-020-10584-1.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943712
Kissling, L., Schneider, C., Seibel, K., Dorjjugder, N., Busche, T., Kalinowski, J. & Mack, M. (2020). The roseoflavin producer Streptomyces davaonensis has a high catalytic capacity and specific genetic adaptations with regard to the biosynthesis of riboflavin. Environmental microbiology. Wiley-Blackwell - STM. doi:10.1111/1462-2920.15066.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941929 OA
Fernandes de Brito, L., Schultenkämper, K., Passaglia, L. & Wendisch, V.F. (2020). CRISPR interference-based gene repression in the plant growth promoter Paenibacillus sonchi genomovar Riograndensis SBR5. Applied Microbiology and Biotechnology , 104, 5095-5106. Springer. doi:10.1007/s00253-020-10571-6.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943414 OA
Voitsekhovskaia, I., Paulus, C., Dahlem, C., Rebets, Y., Nadmid, S., Zapp, J., Axenov-Gribanov, D., Rückert, C., Timofeyev, M., Kalinowski, J., Kiemer, A.K. & Luzhetskyy, A. (2020). Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2A. Microorganisms, 8(5): 680. MDPI. doi:10.3390/microorganisms8050680.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Maus, I., Klocke, M., Derenkó, J., Stolze, Y., Beckstette, M., Jost, C., Wibberg, D., Blom, J., Henke, C., Willenbücher, K., Rumming, M., Rademacher, A., Pühler, A., Sczyrba, A. & Schlüter, A. (2020). Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome, 15(1): 7. BioMed Central. doi:10.1186/s40793-020-00354-x.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944331
Escorcia-Rodriguez, J.M., Tauch, A. & Freyre-Gonzalez, J.A. (2020). Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization. Computational and structural biotechnology journal, 18, 1228-1237. Elsevier. doi:10.1016/j.csbj.2020.05.015.
PUB | DOI | PubMed | Europe PMC
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2944597 OA
Pucker, B., Reiher, F. & Schilbert, H. (2020). Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942995
Rubert, D., Araujo, E., Stefanes, M.A., Stoye, J. & Martinez, F. (2020). Searching and Inferring Colorful Topological Motifs in Vertex-Colored Graphs. Journal of Combinatorial Optimization, 40, 379–411. Springer. doi:10.1007/s10878-020-00590-4.
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943702
Ballas, P., Rückert, C., Wagener, K., Drillich, M., Kampfer, P., Busse, H.-J. & Ehling-Schulz, M. (2020). Corynebacterium urogenitale sp. nov. isolated from the genital tract of a cow. International journal of systematic and evolutionary microbiology. Society for General Microbiology. doi:10.1099/ijsem.0.004198.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data. Plants, 9(4): 439. MDPI AG. doi:10.3390/plants9040439.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University. doi:10.4119/unibi/2942069.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944150
Rettenmaier, R., Schneider, M., Munk, B., Lebuhn, M., Jünemann, S., Sczyrba, A., Maus, I., Zverlov, V. & Liebl, W. (2020). Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Microorganisms, 8(6): 915. MDPI AG. doi:10.3390/microorganisms8060915.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226 OA
Rettenmaier, R., Schneider, M., Munk, B., Lebuhn, M., Jünemann, S., Sczyrba, A., Maus, I., Zverlov, V. & Liebl, W. (2020). Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Microorganisms, 8(6): 915. MDPI AG. doi:10.3390/microorganisms8060915.
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2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812
Radukic, M., Brandt, D., Haak, M., Kalinowski, J. & Müller, K. (2020). Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids. MOLECULAR THERAPY (S. 398-399). Gehalten auf der 23rd Annual Meeting of the American-Society-for-Gene-and-Cell-Therapy, Cambridge: Cell Press.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943896
Ayed, A., Wibberg, D., Zendah El Euch, I., Frese, M., Limam, F. & Sewald, N. (2020). Draft genome sequence of Streptomyces tunisialbus DSM 105760T. Archives of microbiology. doi:10.1007/s00203-020-01913-z.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125 OA
Berckx, F., Wibberg, D., Kalinowski, J. & Pawlowski, K. (2020). The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type. Genes, 11(4). Molecular Diversity Preservation International (MDPI). doi:10.3390/genes11040432.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598
Sevillya, G., Dörr, D., Lerner, Y., Stoye, J., Steel, M. & Snir, S. (2020). Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution, 37(5), 1470–1479. Oxford University Press. doi:10.1093/molbev/msz302.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800
Wibberg, D., Stadler, M., Lambert, C., Bunk, B., Sproer, C., Rückert, C., Kalinowski, J., Cox, R.J. & Kuhnert, E. (2020). High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa. FUNGAL DIVERSITY. Springer. doi:10.1007/s13225-020-00447-5.
PUB | DOI | WoS
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2943880
Sundermann, L.K., Wintersinger, J., Rätsch, G., Stoye, J. & Morris, Q. (2020). Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2020.06.11.146100.
PUB | DOI | Download (ext.) | bioRxiv
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2940602
Haghshenas, E., Asghari, H., Stoye, J., Chauve, C. & Hach, F. (2020). HASLR: Fast Hybrid Assembly of Long Reads. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2020.01.27.921817.
PUB | DOI | Download (ext.) | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943411
Parise, M.T.D., Parise, D., Kato, R.B., Pauling, J.K., Tauch, A., Azevedo, V.A. de C. & Baumbach, J. (2020). CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks. Scientific data, 7(1): 142. Springer Nature. doi:10.1038/s41597-020-0484-9.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2943752
Delépine, B., Gil Lopez, M., Carnicer, M., Vicente, C.M., Wendisch, V.F. & Heux, S. (2020). Charting the metabolic landscape of the facultative methylotroph Bacillus methanolicus. bioRxiv. Cold Spring Harbor Laboratory.
PUB | bioRxiv
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2943670
Rubert, D.P., Araujo, E., Stefanes, M.A., Stoye, J. & Martinez, F.V. (2020). On motifs in colored graphs. arXiv:2005.13634.
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2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D. & Stoye, J. (2020). Computing the rearrangement distance of natural genomes. arXiv:2001.02139.
PUB | Download (ext.) | arXiv
 
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker, B., Siadjeu, C., Viehöver, P., Albach, D. & Weisshaar, B. (2020). Dioscorea dumetorum genome sequence v1.0. Bielefeld University. doi:10.4119/unibi/2941469.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu, C., Pucker, B., Viehöver, P., Albach, D.C. & Weisshaar, B. (2020). High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing. Genes, 11(3): 274. MDPI AG. doi:10.3390/genes11030274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941717
Campanaro, S., Treu, L., Rodriguez-R, L.M., Kovalovszki, A., Ziels, R.M., Maus, I., Zhu, X., Kougias, P.G., Basile, A., Luo, G., Schluter, A., Konstantinidis, K.T. & Angelidaki, I. (2020). New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters. Biotechnology for Biofuels, 13: 25. BMC. doi:10.1186/s13068-020-01679-y.
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942701
Rust, M., Helfrich, E.J.N., Freeman, M.F., Nanudorn, P., Field, C.M., Rückert, C., Kundig, T., Page, M.J., Webb, V.L., Kalinowski, J., Sunagawa, S. & Piel, J. (2020). A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli. Proceedings of the National Academy of Sciences of the United States of America, 117(17), 9508-9518. National Academy of Sciences. doi:10.1073/pnas.1919245117.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937278
Sgobba, E. & Wendisch, V.F. (2020). Synthetic microbial consortia for small molecule production. Current Opinion in Biotechnology, 62, 72–79. Elsevier. doi:10.1016/j.copbio.2019.09.011.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942299
Sundar, L., Susmitha, A., Rajan, D., Hannibal, S., Sasikumar, K., Wendisch, V.F. & Nampoothiri, K.M. (2020). Heterologous expression of genes for bioconversion of xylose to xylonic acid in Corynebacterium glutamicum and optimization of the bioprocess. AMB Express, 10: 68. SpringerOpen. doi:10.1186/s13568-020-01003-9.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
Choi, J., Lee, T., Cho, J., Servante, E.K., Pucker, B., Summers, W., Bowden, S., Rahimi, M., An, K., An, G., Bouwmeester, H.J., Wallington, E.J., Oldroyd, G. & Paszkowski, U. (2020). The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice. Nature Communications, 11(1): 2114. Nature Publishing Group. doi:10.1038/s41467-020-16021-1.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712 OA
Rubert, D., Martinez, F.H.V., Stoye, J. & Dörr, D. (2020). Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics, 21(Suppl. 2): 273. BioMed Central.
PUB | PDF | PubMed | Europe PMC
 
2020 | Patent | PUB-ID: 2943224
Peters-Wendisch, P., Wendisch, V.F. & Henke, N.A. (04.03.2020) Carotenoid and amino acid biosynthesis using recombinant Corynebacterium glutamicum .
PUB
 
2020 | Datenpublikation | PUB-ID: 2941430 OA
Frommer, B., Holtgräwe, D. & Weisshaar, B. (2020). Dataset describing RNA editing sites in the chloroplast genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University. doi:10.4119/unibi/2941430.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941437 OA
Frommer, B., Holtgräwe, D. & Weisshaar, B. (2020). Dataset describing RNA editing sites in the mitochondrial genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University. doi:10.4119/unibi/2941437.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942459 OA
Frommer, B., Holtgräwe, D., Hausmann, L., Viehöver, P., Huettel, B., Töpfer, R. & Weisshaar, B. (2020). Genome Sequences of Both Organelles of the Grapevine Rootstock Cultivar ‘Börner’. Microbiology Resource Announcements, 9(15): e01471-19. American Society for Microbiology. doi:10.1128/mra.01471-19.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2943037 OA
Frey, K., Weisshaar, B. & Pucker, B. (2020). Reference-based QUantification Of gene Dispensability (QUOD). bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941704
Lesker, T.R., Durairaj, A.C., Galvez, E.J.C., Lagkouvardos, I., Baines, J.F., Clavel, T., Sczyrba, A., McHardy, A.C. & Strowig, T. (2020). An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome. Cell reports, 30(9), 2909-2922.e6. Cell Press Elsevier. doi:10.1016/j.celrep.2020.02.036.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941202 OA
Schultenkämper, K., Fernandes de Brito, L. & Wendisch, V.F. (2020). Impact of CRISPR interference on strain development in biotechnology. Biotechnology and Applied Biochemistry, 67(1), 7-21. Wiley. doi:10.1002/bab.1901.
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