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3399 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
Lopatniuk, M.; Myronovskyi, M.; Nottebrock, A.; Busche, T.; Kalinowski, J.; Ostash, B.; Fedorenko, V.; Luzhetskyy, A. (2019): Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites. Applied microbiology and biotechnology,103:(17): 7097–7110.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
Fritsch, V. N.; Loi, V. V.; Busche, T.; Sommer, A.; Tedin, K.; Nurnberg, D. J.; Kalinowski, J.; Bernhardt, J.; Fulde, M.; Antelmann, H. (2019): The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>. Antioxidants & redox signaling,31:(16): 1235-1252.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936725
Busse, H. - J.; Kleinhagauer, T.; Glaeser, S. P.; Spergser, J.; Kampfer, P.; Rückert, C. (2019): Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov. International journal of systematic and evolutionary microbiology,69:(9): 2928-2935.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, S.; Baumann, P. T.; Rückert, C.; Nebel, B. A.; Siebert, D.; Schwentner, A.; Eikmanns, B. J.; Hauer, B.; Kalinowski, J.; Takors, R.; Blombach, B. (2019): Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering,55: 220-230.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936721
Bednarz, H.; Roloff, N.; Niehaus, K. (2019): Mass Spectrometry Imaging of the Spatial and Temporal Localization of Alkaloids in Nightshades. Journal of agricultural and food chemistry,67:(49): 13470-13477.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
Seeger, B.; Mentz, A.; Knebel, C.; Schmidt, F.; Bednarz, H.; Niehaus, K.; Albaum, S.; Kalinowski, J.; Noll, T.; Steinberg, P.; Marx-Stoelting, P.; Heise, T. (2019): Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology,93:(8): 2321-2333.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
Schaffert, L.; März, C.; Burkhardt, L.; Droste, J.; Brandt, D.; Busche, T.; Rosen, W.; Schneiker-Bekel, S.; Persicke, M.; Pühler, A.; Kalinowski, J. (2019): Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110 Microbial Cell Factories,18:(1):114
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936458 OA
Gil Lopez, M.; Irla, M.; Fernandes de Brito, L.; Wendisch, V. F. (2019): Characterization of D-arabitol as newly discovered carbon source of Bacillus methanolicus Frontiers in Microbiology,10:1725
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr, M.; Ferreira, S.; Al-Dilaimi, A.; Bogeholz, S.; Goesmann, A.; Kalinowski, J.; Knabbe, C.; Faber, L.; Oliveira, J. P.; Rudolph, V. (2019): Fabry disease: Detection of Alu-mediated exon duplication by NGS. Molecular and cellular probes,45: 79-83.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Sorieul, L.; Rückert, C.; Al-Dilaimi, A.; Winkler, A.; Kalinowski, J.; Pham, D.; Wabete, N.; Boulo, V. (2019): Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia Microbiology resource announcements,8:(34):e00477-19
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937247
Laso-Perez, R.; Hahn, C.; van Vliet, D. M.; Tegetmeyer, H.; Schubotz, F.; Smit, N. T.; Pape, T.; Sahling, H.; Bohrmann, G.; Boetius, A.; Knittel, K.; Wegener, G. (2019): Anaerobic Degradation of Non-Methane Alkanes by "Candidatus Methanoliparia" in Hydrocarbon Seeps of the Gulf of Mexico mBio,10:(4):e01814-19
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937220 OA
Mindt, M.; Hannibal, S.; Heuser, M.; Risse, J. M.; Sasikumar, K.; Nampoothiri, K. M.; Wendisch, V. F. (2019): Fermentative production of N-alkylated glycine derivatives by recombinant Corynebacterium glutamicum using a mutant of imine reductase DpkA from Pseudomonas putida Frontiers in Bioengineering and Biotechnology,7:232
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937045 OA
Veldmann, K.; Dachwitz, S.; Risse, J. M.; Lee, J. - H.; Sewald, N.; Wendisch, V. F. (2019): Bromination of L-tryptophan in a fermentative process with Corynebacterium glutamicum Frontiers in Bioengineering and Biotechnology ,7:219
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker, B.; Rückert, C.; Stracke, R.; Viehöver, P.; Kalinowski, J.; Weisshaar, B. (2019): Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome Genes,10:(9):671
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274
Meyer, F.; Bremges, A.; Belmann, P.; Janssen, S.; McHardy, A. C.; Koslicki, D. (2019): Assessing taxonomic metagenome profilers with OPAL Genome biology,20:(1):51
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934305
Irla, M.; Heggeset, T. M. B.; Naerdal, I.; Paul, L.; Haugen, T.; Le, S. B.; Brautaset, T.; Wendisch, V. F. (2019): Corrigendum: Genome-Based Genetic Tool Development for Bacillus methanolicus. Theta- and Rolling Circle-Replicating Plasmids for Inducible Gene Expression and Application to Methanol-Based Cadaverine Production Frontiers in Microbiology,10:425
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328
Iszatt, N.; Janssen, S.; Lenters, V.; Dahl, C.; Stigum, H.; Knight, R.; Mandal, S.; Peddada, S.; González, A.; Midtvedt, T.; Eggesbø, M. (2019): Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month Microbiome,7:(1):34
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273 OA
Gräwe, A.; Dreyer, A.; Vornholt, T.; Barteczko, U.; Buchholz, L.; Drews, G.; Ho, U. L.; Jackowski, M. E.; Kracht, M.; Lüders, J.; Bleckwehl, T.; Rositzka, L.; Ruwe, M.; Wittchen, M.; Lutter, P.; Müller, K.; Kalinowski, J. (2019): A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one,14:(3):e0210940
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933667 OA
Perez, F.; Fernandes de Brito, L.; Wendisch, V. F. (2019): Function of L-Pipecolic acid as compatible solute in Corynebacterium glutamicum as basis for its production under hyperosmolar conditions Frontiers in Microbiology,10: 340.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof, L. F.; Haurat, M. F.; Hoffmann, L.; Albersmeier, A.; Wolf, J.; Neu, A.; Pham, T. K.; Albaum, S.; Jakobi, T.; Schouten, S.; Neumann-Schaal, M.; Wright, P. C.; Kalinowski, J.; Siebers, B.; Albers, S. - V. (2019): Early Response of Sulfolobus acidocaldarius to Nutrient Limitation FRONTIERS IN MICROBIOLOGY,9:3201
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935517
Schultenkämper, K.; Fernandes de Brito, L.; Gil Lopez, M.; Brautaset, T.; Wendisch, V. F. (2019): Establishment and application of CRISPR interference to affect sporulation, hydrogen peroxide detoxification and mannitol catabolism in the methylotrophic thermophile Bacillus methanolicus Applied Microbiology and Biotechnology,103:(14): 5879–5889.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556 OA
Verwaaijen, B.; Wibberg, D.; Winkler, A.; Zrenner, R.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. (2019): A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani Scientific Reports,9:(1):7221
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935582
Noster, J.; Persicke, M.; Chao, T. - C.; Krone, L.; Heppner, B.; Hensel, M.; Hansmeier, N. (2019): Impact of ROS-Induced Damage of TCA Cycle Enzymes on Metabolism and Virulence of Salmonella enterica serovar Typhimurium FRONTIERS IN MICROBIOLOGY,10:762
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935489
Heyer, R.; Schallert, K.; Siewert, C.; Kohrs, F.; Greve, J.; Maus, I.; Klang, J.; Klocke, M.; Heiermann, M.; Hoffmann, M.; Puttker, S.; Calusinska, M.; Zoun, R.; Saake, G.; Benndorf, D.; Reichl, U. (2019): Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants. Microbiome,7:(1):69
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935488 OA
Osterloff, J.; Nilssen, I.; Jarnegren, J.; Van Engeland, T.; Buhl-Mortensen, P.; Nattkemper, T. W. (2019): Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory. Scientific reports,9:(1):6578
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
Arenas-Lopez, C.; Locker, J.; Orol, D.; Walter, F.; Busche, T.; Kalinowski, J.; Minton, N. P.; Kovacs, K.; Winzer, K. (2019): The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16. Biotechnology for biofuels,12:(1):150
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936315 OA
Kamal, N.; Ochßner, I.; Schwandner, A.; Viehöver, P.; Hausmann, L.; Töpfer, R.; Weisshaar, B.; Holtgräwe, D. (2019): Characterization of genes and alleles involved in the control of flowering time in grapevine. PLoS One,14:(7):e0214703
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935013
Luvizott, D. M.; Araujo, J. E.; Silva, M. D. C. P.; Dias, A. C. F.; Kraft, B.; Tegetmeyer, H.; Strous, M.; Andreote, F. D. (2019): The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS,91:(Suppl. 1):e20180373
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
Dostalova, H.; Busche, T.; Holatko, J.; Rucka, L.; Stepanek, V.; Barvik, I.; Nesvera, J.; Kalinowski, J.; Patek, M. (2019): Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032 FRONTIERS IN MICROBIOLOGY,9:(50):3287
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, N.; Lafond, M.; Thévenin, A.; Ouangraoua, A.; Wittler, R.; Chauve, C. (2019): The SCJ Small Parsimony Problem for Weighted Gene Adjacencies IEEE/ACM Transactions on Computational Biology and Bioinformatics,16:(4): 1364-1373.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933285
Herrera-Ubaldo, H.; Lozano-Sotomayor, P.; Ezquer, I.; Di Marzo, M.; Chávez Montes, R. A.; Gómez-Felipe, A.; Pablo-Villa, J.; Diaz-Ramirez, D.; Ballester, P.; Ferrándiz, C.; Sagasser, M.; Colombo, L.; Marsch-Martínez, N.; de Folter, S. (2019): New roles of NO TRANSMITTING TRACT and SEEDSTICK during medial domain development in Arabidopsis fruits Development,146:(1):dev172395
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2019 | Datenpublikation | PUB-ID: 2934220 OA
Pucker, B.; Frey, K. (2019): RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University.
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2019 | Datenpublikation | PUB-ID: 2934226 OA
Pucker, B.; Frey, K. (2019): RNA-Seq read coverage depth of splice sites in animals. Bielefeld University.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda, A.; Feng, T.; Sheehan, H.; Walker‐Hale, N.; Pucker, B.; Lopez‐Nieves, S.; Guo, R.; Brockington, S. (2019): The evolution of betalain biosynthesis in Caryophyllales New Phytologist,224:(1): 71-85.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013
Pucker, B.; Schilbert, H. (2019): Genomics and Transcriptomics Advance in Plant Sciences. In: Sudhir P. Singh; Santosh Kumar Upadhyay; Ashutosh Pandey; Sunil Kumar (Hrsg.): Molecular Approaches in Plant Biology and Environmental Challenges. Singapore: Springer. (Energy, Environment, and Sustainability, ).
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2019 | Konferenzbeitrag | PUB-ID: 2940489
S. Epping, M.; Grundmann, A.; Gröger, H.; Viefhues, M. (2019): Dielectrophoretic analysis: a tool for studying the impact of organic solvents on whole-cell biocatalysts. In: 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS2019). S. 1014-1015.
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2019 | Preprint | Veröffentlicht | PUB-ID: 2939887
Campanaro, S.; Treu, L.; Rodriguez-R, L. M.; Kovalovszki, A.; Ziels, R. M.; Maus, I.; Zhu, X.; Kougias, P. G.; Basile, A.; Luo, G.; Schlüter, A.; Konstantinidis, K. T.; Angelidaki, I. (2019): The anaerobic digestion microbiome: a collection of 1600 metagenome-assembled genomes shows high species diversity related to methane production bioRxiv
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936783
Sheehan, H.; Feng, T.; Walker‐Hale, N.; Lopez‐Nieves, S.; Pucker, B.; Guo, R.; Yim, W. C.; Badgami, R.; Timoneda, A.; Zhao, L.; Tiley, H.; Copetti, D.; Sanderson, M. J.; Cushman, J. C.; Moore, M. J.; Smith, S. A.; Brockington, S. F. (2019): Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales New Phytologist,nph.16089
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2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker, B.; Feng, T.; Brockington, S. F. (2019): Next generation sequencing to investigate genomic diversity in Caryophyllales bioRxiv
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker, B. (2019): Mapping-based genome size estimation bioRxiv
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner, J. - S.; Howard, D.; Pucker, B. (2019): Influence of neighboring small sequence variants on functional impact prediction bioRxiv
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2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker, B.; Busche, M.; Viehöver, P.; Weisshaar, B.; Stracke, R. (2019): Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939194
Mayer, G.; Quast, C.; Felden, J.; Lange, M.; Prinz, M.; Pühler, A.; Lawerenz, C.; Scholz, U.; Gloeckner, F. O.; Mueller, W.; Marcus, K.; Eisenacher, M. (2019): A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects BRIEFINGS IN BIOINFORMATICS,20:(4): 1215-1221.
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2019 | Report | Veröffentlicht | PUB-ID: 2939260
Gagie, T.; Manzini, G.; Navarro, G.; Stoye, J. (2019): 25 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241. Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
Nguyen, T. V.; Wibberg, D.; Vigil-Stenman, T.; Berckx, F.; Battenberg, K.; Demchenko, K. N.; Blom, J.; Fernandez, M. P.; Yamanaka, T.; Berry, A. M.; Kalinowski, J.; Brachmann, A.; Pawlowski, K. (2019): Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams. Genome biology and evolution,11:(8): 2273–2291.
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2019 | Preprint | Veröffentlicht | PUB-ID: 2933775
Perozeni, F.; Cazzaniga, S.; Baier, T.; Zanoni, F.; Zoccatelli, G.; Lauersen, K. J.; Wobbe, L.; Ballottari, M. (2019): Turning a green alga red. Engineering astaxanthin biosynthesis by intragenic pseudogene revival in Chlamydomonas reinhardtii.: Supplementary information bioRxiv
PUB | bioRxiv
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
Schelletter, L.; Albaum, S.; Walter, S.; Noll, T.; Hoffrogge, R. (2019): Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS Applied microbiology and biotechnology,103:(19): 8127-8143.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
Rebets, Y.; Nadmid, S.; Paulus, C.; Dahlem, C.; Herrmann, J.; Huebner, H.; Rückert, C.; Kiemer, A. K.; Gmeiner, P.; Kalinowski, J.; Mueller, R.; Luzhetskyy, A. (2019): Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis Angewandte Chemie International Edition,58:(37): 12930-12934.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, J.; Bannai, H.; Cazaux, B.; Peterlongo, P.; Stoye, J. (2019): Finding All Maximal Perfect Haplotype Blocks in Linear Time. In: Proceedings of WABI 2019. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik . (Leibniz International Proceedings in Informatics. LIPIcs, 143). S. 8:1-8:9.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
Wittler, R. (2019): Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Katharina Huber; Dan Gusfield (Hrsg.): Proceedings of WABI 2019. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik. (LIPIcs, 143).
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2935647
Reintjes, G.; Tegetmeyer, H.; Burgisser, M.; Orlic, S.; Tews, I.; Zubkov, M.; VoSS, D.; Zielinski, O.; Quast, C.; Glockner, F. O.; Amann, R.; Ferdelman, T. G.; Fuchs, B. M. (2019): On site analysis of bacterial communities of the ultra-oligotrophic South Pacific Gyre. Applied and environmental microbiology,85:(14):UNSP e00184-19
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936207
Jaeger, D.; Baier, T.; Lauersen, K. J. (2019): Intronserter, an advanced online tool for design of intron containing transgenes Algal Research,42:101588
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
Quehenberger, J.; Albersmeier, A.; Glatzel, H.; Hackl, M.; Kalinowski, J.; Spadiut, O. (2019): A defined cultivation medium for Sulfolobus acidocaldarius JOURNAL OF BIOTECHNOLOGY,301: 56-67.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936087
Mudalungu, C. M.; von Torne, W. J.; Voigt, K.; Rückert, C.; Schmitz, S.; Sekurova, O. N.; Zotchev, S. B.; Sussmuth, R. D. (2019): Noursamycins, Chlorinated Cyclohexapeptides Identified from Molecular Networking of Streptomyces noursei NTR-SR4. Journal of natural products,82:(6): 1478-1486.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936329
Ismail, M.; Frese, M.; Patschkowski, T.; Ortseifen, V.; Niehaus, K.; Sewald, N. (2019): Flavin-Dependent Halogenases from Xanthomonas campestris pv. campestris B100 Prefer Bromination over Chlorination ADVANCED SYNTHESIS & CATALYSIS,361:(11): 2475-2486.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892
Loi, V. V.; Huyen, N. T. T.; Busche, T.; Tung, Q. N.; Gruhlke, M. C. H.; Kalinowski, J.; Bernhardt, J.; Slusarenko, A. J.; Antelmann, H. (2019): Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress. Free radical biology & medicine,139: 55-69.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033
Tsolis, K. C.; Hamed, M. B.; Simoens, K.; Koepff, J.; Busche, T.; Rückert, C.; Oldiges, M.; Kalinowski, J.; Anne, J.; Kormanec, J.; Bernaerts, K.; Karamanou, S.; Economou, A. (2019): Secretome Dynamics in a Gram-Positive Bacterial Model MOLECULAR & CELLULAR PROTEOMICS,18:(3): 423-436.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035
Koshla, O. T.; Rokytskyy, I. V.; Ostash, I. S.; Busche, T.; Kalinowski, J.; Moesker, E.; Suessmuth, R. D.; Fedorenko, V. O.; Ostash, B. O. (2019): Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2 CYTOLOGY AND GENETICS,53:(1): 1-7.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570
Castellani, L. G.; Nilsson, J. F.; Wibberg, D.; Schlüter, A.; Pühler, A.; Brom, S.; Pistorio, M.; Tejerizo, G. T. (2019): Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83 Plasmid,103: 9-16.
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2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
João C. Setubal; Jens Stoye; Bas E. Dutilh (Hrsg.) (2019): Computational Methods for Microbiome Analysis. Lausanne: Frontiers Media.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig, A.; Helmle, I.; Bader, M.; Wolf, F.; Kulik, A.; Al-Dilaimi, A.; Wibberg, D.; Kalinowski, J.; Gross, H.; Kaysser, L. (2019): Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase CHEMICAL SCIENCE,10:(16): 4486-4490.
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2019 | Preprint | PUB-ID: 2935604 OA
Wittler, R. (2019): Alignment- and reference-free phylogenomics with colored de-Bruijn graphs arXiv:1905.04165
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D.; Stoye, J. (2019): A Perspective on Comparative and Functional Genomics. In: Tandy Warnow (Hrsg.): Bioinformatics and Phylogenetics. Cham: Springer . (Computational Biology, 29). S. 361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934146
Osterloff, J.; Nilssen, I.; Jarnegren, J.; van Engeland, T.; Buhl-Mortensen, P.; Nattkemper, T. W. (2019): Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory Scientific Reports
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
Hain, C.; Cieslak, C.; Mentz, A.; Stranzenbach, R.; Kalinowski, J.; Stadler, R. (2019): Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT,17:(Suppl. 1): 1.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932869
Naerdal, I.; Pfeifenschneider, J.; Brautaset, T.; Wendisch, V. F. (2019): Erratum: Methanol-based cadaverine production by genetically engineered Bacillus methanolicus strains Microbial Biotechnology,12:(1): 182-183.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2933685
Löwe, J.; Blifernez-Klassen, O.; Baier, T.; Wobbe, L.; Kruse, O.; Gröger, H. (2019): Type II flavoprotein monooxygenase PsFMO_A from the bacterium Pimelobacter sp. Bb-B catalyzes enantioselective Baeyer-Villiger oxidations with a relaxed cofactor specificity. Journal of biotechnology,294: 81-87.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933807
Mindt, M.; Heuser, M.; Wendisch, V. F. (2019): Xylose as preferred substrate for sarcosine production by recombinant Corynebacterium glutamicum Bioresource Technology,281: 135-142.
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2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning, A.; Lichtenstein, D.; Mentz, A.; Kalinowski, J.; Schmidt, F.; Poetz, O.; Lampen, A. (2019): A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro. In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. Springer. (392). S. S76-S77.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932707
Veldmann, K.; Minges, H.; Sewald, N.; Lee, J. - H.; Wendisch, V. F. (2019): Metabolic engineering of Corynebacterium glutamicum for the fermentative production of halogenated tryptophan Journal of Biotechnology,291: 7-16.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
da Schoren Costa, P.; Bolzan de Campos, S.; Albersmeier, A.; Dirksen, P.; Pereira Dresseno, A. L.; Andrade Pais dos Santos, O. J.; Lima Milani, K. M.; Etto, R. M.; Battistus, A. G.; Peres Rodrigues da Costa, A. C.; Martinez de Oliveira, A. L.; Weigert Galvão, C.; Guimarães, V. F.; Sczyrba, A.; Wendisch, V. F.; Passaglia, L. (2018): Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach Plant and Soil,422:(1-2): 467-478.
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2018 | Patent | PUB-ID: 2943222
Wendisch, V. F.; Irla, M.; Paul, L. (15.03.2018): Method and means for producing aminolevulinic acid
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2018 | Report | PUB-ID: 2942066
Panhorst, M.; Grotjohann, N. (2018): International group puzzle with national core groups and international expert groups. Development and evaluation of the project „Biotechnology in Our Life“.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze, Y.; Bremges, A.; Maus, I.; Pühler, A.; Sczyrba, A.; Schlüter, A. (2018): Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants Microbial Biotechnology,11:(4): 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis, J. S.; Wibberg, D.; Ramírez-Portilla, C.; Rupp, O.; Sczyrba, A.; Winkler, A.; Kalinowski, J.; Wilke, T. (2018): Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts GigaScience,7:(7):giy075
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Maus, I.; Rumming, M.; Bergmann, I.; Heeg, K.; Pohl, M.; Nettmann, E.; Jaenicke, S.; Blom, J.; Pühler, A.; Schlüter, A.; Sczyrba, A.; Klocke, M. (2018): Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors Biotechnology for Biofuels,11:(1):167
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
Meyer, F.; Hofmann, P.; Belmann, P.; Garrido-Oter, R.; Fritz, A.; Sczyrba, A.; McHardy, A. C. (2018): AMBER: Assessment of Metagenome BinnERs GigaScience,7:(6):giy069
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, L.; Krüger, J.; Sczyrba, A. (2018): Analyzing large scale genomic data on the cloud with Sparkhit Bioinformatics,34:(9): 1457-1465.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932961
Daniels, W.; Bouvin, J.; Busche, T.; Rückert, C.; Simoens, K.; Karamanou, S.; Van Mellaert, L.; Frojonsson, O. H.; Nicolai, B.; Economou, A.; Kalinowski, J.; Anne, J.; Bernaerts, K. (2018): Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein MICROBIAL CELL FACTORIES,17:(1):198
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider, O.; Simic, N.; Aachmann, F. L.; Rückert, C.; Kristiansen, K. A.; Kalinowski, J.; Jiang, Y.; Wang, L.; Jiang, C. - L.; Lale, R.; Zotchev, S. B. (2018): Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic FRONTIERS IN MICROBIOLOGY,9:3139
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz, F.; Helmdach, D.; Aschenbrenner, I.; Funck, N.; Wibberg, D.; Winkler, A.; Bohnen, F.; Kalinowski, J.; Mehlmer, N.; Brueck, T. B. (2018): Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY,6:200
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi, V.; Busche, T.; Preuss, T.; Kalinowski, J.; Bernhardt, J.; Antelmann, H. (2018): The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus FRONTIERS IN MICROBIOLOGY,9:3037
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932968
Rebets, Y.; Tsolis, K. C.; Gudmundsdottir, E. E.; Koepff, J.; Wawiernia, B.; Busche, T.; Bleidt, A.; Horbal, L.; Myronovskyi, M.; Ahmed, Y.; Wiechert, W.; Rueckert, C.; Hamed, M. B.; Bilyk, B.; Anne, J.; Fridjonsson, O.; Kalinowski, J.; Oldiges, M.; Economou, A.; Luzhetskyy, A. (2018): Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene Deletions FRONTIERS IN MICROBIOLOGY,9:3033
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker, B.; Brockington, S. F. (2018): Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes BMC Genomics,19:(1):980
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
Zurowietz, M.; Langenkämper, D.; Hosking, B.; Ruhl, H.; Nattkemper, T. W. (2018): MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration PLoS ONE,13:(11):e0207498
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064
Brinkrolf, C.; Henke, N. A.; Ochel, L.; Pucker, B.; Kruse, O.; Lutter, P. (2018): Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA Journal of Integrative Bioinformatics,15:(3):20180018
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus, C.; Rebets, Y.; Zapp, J.; Rückert, C.; Kalinowski, J.; Luzhetskyy, A. (2018): New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme FRONTIERS IN MICROBIOLOGY,9:1959
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Ribicic, D.; McFarlin, K. M.; Netzer, R.; Brakstad, O. G.; Winkler, A.; Throne-Holst, M.; Storseth, T. R. (2018): Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis BMC MICROBIOLOGY,18:(1):83
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693 OA
Humble, E.; Dasmahapatra, K. K.; Martinez-Barrio, A.; Gregório, I.; Forcada, J.; Polikeit, A. - C.; Goldsworthy, S. D.; Goebel, M. E.; Kalinowski, J.; Wolf, J. B. W.; Hoffman, J. (2018): RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding G3: Genes|Genomes|Genetics,8:(8): 2709-2722.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930755
Crozet, P.; Navarro, F. J.; Willmund, F.; Mehrshahi, P.; Bakowski, K.; Lauersen, K. J.; Pérez-Pérez, M. - E.; Auroy, P.; Gorchs Rovira, A.; Sauret-Gueto, S.; Niemeyer, J.; Spaniol, B.; Theis, J.; Trösch, R.; Westrich, L. - D.; Vavitsas, K.; Baier, T.; Hübner, W.; de Carpentier, F.; Cassarini, M.; Danon, A.; Henri, J.; Marchand, C. H.; de Mia, M.; Sarkissian, K.; Baulcombe, D. C.; Peltier, G.; Crespo, J. L.; Kruse, O.; Jensen, P. E.; Schroda, M.; Smith, A. G.; Lemaire, S. D. (2018): Birth of a photosynthetic chassis. A MoClo toolkit enabling synthetic biology in the microalga Chlamydomonas reinhardtii ACS Synthetic Biology,7:(9): 2074-2086.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930465 OA
Sgobba, E.; Blöbaum, L.; Wendisch, V. F. (2018): Production of food and feed additives from non-food-competing feedstocks. Valorizing N-acetylmuramic acid for amino acid and carotenoid fermentation with Corynebacterium glutamicum Frontiers in Microbiology,9:2046
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Linden, M.; Prochazka, M.; Lappalainen, I.; Bucik, D.; Vyskocil, P.; Kuba, M.; Silén, S.; Belmann, P.; Sczyrba, A.; Newhouse, S.; Matyska, L.; Nyrönen, T. (2018): Common ELIXIR Service for Researcher Authentication and Authorisation F1000Research,7:1199
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930292 OA
Mindt, M.; Risse, J. M.; Gruß, H.; Sewald, N.; Eikmanns, B. J.; Wendisch, V. F. (2018): One-step process for production of N-methylated amino acids from sugars and methylamine using recombinant Corynebacterium glutamicum as biocatalyst Scientific Reports,8:(1):12895
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford, C. M.; Dymek, S.; Kerkhoff, D.; März, C.; Schmidt, O.; Edich, M.; Droste, J.; Pucker, B.; Rückert, C.; Kalinowski, J. (2018): Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications Journal of Biological Engineering,12:(1):13
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930264
Krell, V.; Jakobs-Schönwandt, D.; Persicke, M.; Patel, A. (2018): Endogenous arabitol and mannitol improve shelf life of encapsulated Metarhizium brunneum WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY,34:(8):108
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920989
Perez, F.; Wendisch, V. F. (2018): Transport and metabolic engineering of the cell factory Corynebacterium glutamicum FEMS Microbiology Letters,365:(16):fny166
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921210
Lauersen, K. J.; Wichmann, J.; Baier, T.; Kampranis, S. C.; Pateraki, I.; Lindberg Møller, B.; Kruse, O. (2018): Phototrophic production of heterologous diterpenoids and a hydroxy-functionalized derivative from Chlamydomonas reinhardtii Metabolic Engineering,49: 116-127.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider, O.; Ilic-Tomic, T.; Rückert, C.; Kalinowski, J.; Gencic, M. S.; Zivkovic, M. Z.; Stankovic, N.; Radulovic, N. S.; Vasiljevic, B.; Nikodinovic-Runic, J.; Zotchev, S. B. (2018): Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10 FRONTIERS IN MICROBIOLOGY,9:10
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2018 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2931825
Baier, T.; Kros, D.; Feiner, R.; Lauersen, K. J.; Müller, K.; Kruse, O. (2018): Engineered Fusion Proteins for Efficient Protein Secretion and Purification of a Human Growth Factor from the Green Microalga Chlamydomonas reinhardtii ACS Synthetic Biology,7:(11): 2547-2557.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret, M.; Guerrero-Garzon, J. F.; Urban, E.; Zehl, M.; Wronski, V. - K.; Rückert, C.; Busche, T.; Kalinowski, J.; Rollinger, J. M.; Abate, D.; Zotchev, S. B. (2018): Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry FRONTIERS IN MICROBIOLOGY,9:13
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