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3378 Publikationen

2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2942299
Lekshmy, S.; Susmitha, A.; Rajan, D.; Sasikumar, K.; Hannibal, S.; Wendisch, V. F.; Nampoothiri, K. M. (Accepted): Heterologous expression of genes for bioconversion of Xylose to Xylonic acid in Corynebacterium glutamicum and optimization of the bioprocess AMB Express
PUB
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert, H.; Rempel, A.; Pucker, B. (2020): Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data Plants,9:(4):439
PUB | PDF | DOI | Download (ext.) | bioRxiv
 
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert, H.; Rempel, A.; Pucker, B. (2020): Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939461
Drejer, E. B.; Chan, D.; Haupka, C.; Wendisch, V. F.; Brautaset, T.; Irla, M. (2020): Methanol-based acetoin production by genetically engineered Bacillus methanolicus Green Chemistry,22:(3): 788-802.
PUB | DOI
 
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker, B.; Siadjeu, C.; Viehöver, P.; Albach, D.; Weisshaar, B. (2020): Dioscorea dumetorum genome sequence v1.0. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu, C.; Pucker, B.; Viehöver, P.; Albach, D. C.; Weisshaar, B. (2020): High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing Genes,11:(3):274
PUB | PDF | DOI | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe, D.; Rosleff Soerensen, T.; Hausmann, L.; Pucker, B.; Viehöver, P.; Töpfer, R.; Weisshaar, B. (2020): A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping Frontiers in Plant Science,11:156
PUB | PDF | DOI | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
Frey, K.; Pucker, B. (2020): Animal, fungi, and plant genome sequences harbour different non-canonical splice sites Cells,9:(2):458
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941202 OA
Schultenkämper, K.; Fernandes de Brito, L.; Wendisch, V. F. (2020): Impact of CRISPR interference on strain development in biotechnology Biotechnology and Applied Biochemistry,67:(1): 7-21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2941860 OA
Schilbert, H.; Rempel, A.; Pucker, B. (2020): Comparison of read mapping and variant calling tools for the analysis of plant NGS data bioRxiv
PUB | PDF | Download (ext.) | bioRxiv
 
2020 | Konferenzbeitrag | PUB-ID: 2942065
Panhorst, M.; Grotjohann, N. (2020): Interprofessionell von Anfang an: Biologie - Technik - Gesundheit.
PUB
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940387
Fernando Gil, J.; Wibberg, D.; Eini, O.; Savenkov, E. I.; Varrelmann, M.; Liebe, S. (2020): Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with Their Host Sugar Beet. Viruses,12:(1): 76.:76
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | PUB-ID: 2940492
Epping, M. S.; Wedde, S.; Grundmann, A.; Radukic, M.; Gröger, H.; Hummel, A.; Viefhues, M. (2020): Dielectrophoretic analysis of the impact of isopropyl alcohol on the electric polarisability of Escherichia coli whole-cells Analytical Bioanalytical Chemistry
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Maus, I.; Klocke, M.; Derenkó, J.; Stolze, Y.; Beckstette, M.; Jost, C.; Wibberg, D.; Blom, J.; Henke, C.; Willenbücher, K.; Rumming, M.; Rademacher, A.; Pühler, A.; Sczyrba, A.; Schlüter, A. (2020): Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics Environmental Microbiome,15:(1):7
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2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941899
Rust, M.; Helfrich, E. J. N.; Freeman, M. F.; Nanudorn, P.; Field, C.; Rückert, C.; Page, M. J.; Webb, V. L.; Kalinowski, J.; Sunagawa, S.; Piel, J. (2020): A Multi-Producer Microbiome Creates Chemical Diversity in the Marine Sponge Mycale hentscheli. In: MARINE DRUGS. Basel: Mdpi. (18).
PUB | WoS
 
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941898
Cahn, J. K. B.; Peters, E. E.; Lotti, A.; Field, C.; Rückert, C.; Kalinowski, J.; Sunagawa, S.; Takeyama, H.; Piel, J. (2020): The Evolutionary Profile of a Superproducer Sponge Symbiont, Candidatus "Entheonella". In: MARINE DRUGS. Basel: Mdpi. (18).
PUB | WoS
 
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941893
Schmidt, F.; Steinhilber, A.; Mentz, A.; Kalinowski, J.; Lichtenstein, D.; Braeuning, A.; Joos, T.; Poetz, O. (2020): Mixture effects on toxicologically relevant liver proteins after pesticide treatment in hepaRG cells. In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. New york: Springer. (393). S. 15.
PUB | WoS
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941820 OA
Pfeifenschneider, J.; Markert, B.; Stolzenberger, J.; Brauatset, T.; Wendisch, V. F. (2020): Transaldolase in Bacillus methanolicus: Biochemical Characterization and Biological Role in Ribulose Monophosphate Cycle BMC Microbiology,20:63
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2941929
Fernandes de Brito, L.; Schultenkämper, K.; Passaglia, L.; Wendisch, V. F. (Accepted): CRISPR interference-based gene repression in the plant growth promoter Paenibacillus sonchi genomovar Riograndensis SBR5 Applied Microbiology and Biotechnology
PUB | DOI
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2941970 OA
Frommer, B.; Holtgräwe, D.; Hausmann, L.; Viehöver, P.; Hüttel, B.; Töpfer, R.; Weisshaar, B. (2020): Genome sequences of both organelles of the grapevine rootstock cultivar 'Börner' bioRxiv
PUB | Download (ext.) | bioRxiv
 
2020 | Datenpublikation | PUB-ID: 2941430 OA
Frommer, B.; Holtgräwe, D.; Weisshaar, B. (2020): Dataset describing RNA editing sites in the chloroplast genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941437 OA
Frommer, B.; Holtgräwe, D.; Weisshaar, B. (2020): Dataset describing RNA editing sites in the mitochondrial genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941091
Li, Q.; Rückert, C.; Li, G.; Huang, P.; Schneider, O.; Kalinowski, J.; Jiang, Y.; B Zotchev, S.; Jiang, C. - L. (2020): Corrigendum: Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil. International journal of systematic and evolutionary microbiology,70:(1): 703.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939618 OA
Alanko, J.; Bannai, H.; Cazaux, B.; Peterlongo, P.; Stoye, J. (2020): Finding all maximal perfect haplotype blocks in linear time Algorithms for Molecular Biology,15: 2.:2
PUB | PDF | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941717
Campanaro, S.; Treu, L.; Rodriguez-R, L. M.; Kovalovszki, A.; Ziels, R. M.; Maus, I.; Zhu, X.; Kougias, P. G.; Basile, A.; Luo, G.; Schluter, A.; Konstantinidis, K. T.; Angelidaki, I. (2020): New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters. Biotechnology for biofuels,13:(1): 25.:225
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2941708
Perozeni, F.; Cazzaniga, S.; Baier, T.; Zanoni, F.; Zoccatelli, G.; Lauersen, K. J.; Wobbe, L.; Ballottari, M. (2020): Turning a green alga red: engineering astaxanthin biosynthesis by intragenic pseudogene revival in Chlamydomonas reinhardtii. Plant biotechnology journal,pbi.13364
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2941687
Mindt, M.; Walter, T.; Kugler, P.; Wendisch, V. F. (2020): Microbial engineering for production of N-functionalized amino acids and amines Biotechnology Journal , e1900451.:1900451
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939840 OA
Hassa, J.; Wibberg, D.; Maus, I.; Pühler, A.; Schlüter, A. (2020): Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter Microorganisms,8:(1):13
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386
Lick, S.; Krockel, L.; Wibberg, D.; Winkler, A.; Blom, J.; Bantleon, A.; Goesmann, A.; Kalinowski, J. (2020): Pseudomonas carnis sp. nov., isolated from meat. International journal of systematic and evolutionary microbiology,70:(3): 1528-1540.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934524
Wendisch, V. F. (2020): Metabolic engineering advances and prospects for amino acid production Metabolic Engineering,58: 17–34.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941169
Mao, Y.; Gabel, A.; Nakel, T.; Viehöver, P.; Baum, T.; Tekleyohans, D. G.; Vo, D.; Grosse, I.; Groß-Hardt, R. (2020): Selective egg cell polyspermy bypasses the triploid block eLife,9:e52976.
PUB | DOI | WoS | PubMed | Europe PMC | EBI - ENA Project
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608
Stadler, M.; Lambert, C.; Wibberg, D.; Kalinowski, J.; Cox, R. J.; Kolarik, M.; Kuhnert, E. (2020): Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota) MYCOLOGICAL PROGRESS,19:(3): 235-245.
PUB | DOI | WoS
 
2020 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2938976
Wendisch, V. F.; Lee, J. - H. (In Press): Metabolic engineering in Corynebacterium glutamicum. In: Masayuki Inui; Koichi Toyoda (Hrsg.): Corynebacterium glutamicum – Biology and Biotechnology. Springer Nature Switzerland. (Microbiology Monographs, ).
PUB | DOI
 
2020 | Konferenzbeitrag | Angenommen | PUB-ID: 2939729
Bohnenkämper, L.; Dias Vieira Braga, M.; Dörr, D.; Stoye, J. (Accepted): Computing the rearrangement distance of natural genomes. In: Proceedings of RECOMB 2020. (LNBI, ).
PUB
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Bohnenkämper, L.; Dias Vieira Braga, M.; Dörr, D.; Stoye, J. (2020): Computing the rearrangement distance of natural genomes arXiv:2001.02139
PUB | arXiv
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939598
Sevillya, G.; Dörr, D.; Lerner, Y.; Stoye, J.; Steel, M.; Snir, S. (Accepted): Horizontal Gene Transfer Phylogenetics: A Random Walk Approach Molecular Biology and Evolution
PUB | DOI | PubMed | Europe PMC
 
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker, B. (2020): Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2940694 OA
Pucker, B.; Pandey, A.; Weisshaar, B.; Stracke, R. (2020): The R2R3-MYB gene family in banana (Musa acuminata): genome-wide identification, classification and expression patterns bioRxiv
PUB | Download (ext.) | bioRxiv
 
2020 | Preprint | PUB-ID: 2940602
Haghshenas, E.; Asghari, H.; Stoye, J.; Chauve, C.; Hach, F. (2020): HASLR: Fast Hybrid Assembly of Long Reads
PUB | bioRxiv
 
2020 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938507
Wendisch, V. F. (2020): Genome-reduced Corynebacterium glutamicum fit for biotechnological applications. In: Alvaro R. Lara; Guillermo Gosset Lagarda (Hrsg.): Minimal Cells: Design, Construction, Biotechnological Applications. Cham: Springer . S. 95-116.
PUB | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937278
Sgobba, E.; Wendisch, V. F. (2020): Synthetic microbial consortia for small molecule production Current Opinion in Biotechnology,62: 72–79.
PUB | DOI | PubMed | Europe PMC
 
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2019 | Konferenzbeitrag | PUB-ID: 2942061
Panhorst, M. (2019): Biotechnology in our life - ein EU-Projekt.
PUB
 
2019 | Konferenzbeitrag | PUB-ID: 2942062
Panhorst, M. (2019): Internationale Projektarbeit mit Jugendlichen im Projekt "Biotechnology in our life".
PUB
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942060
Röllke, K.; Panhorst, M.; Grotjohann, N. (2019): Schüler & Schülerinnen forschen im teutolab-biotechnologie Lela Magazin,25:(19)
PUB
 
2019 | Konferenzbeitrag | PUB-ID: 2942059
Röllke, K.; Panhorst, M.; Grotjohann, N. (2019): Forschung zur synthetischen Biologie im teutolab-biotechnologie für den internationalen iGEM Wettbewerb.
PUB
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942056
Panhorst, M.; Grotjohann, N. (2019): Schülerlabor international: Schüleraustausch und biotechnologische Bildung Lela Magazin,25:(10-11)
PUB
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
Belmann, P.; Fischer, B.; Krüger, J.; Procházka, M.; Rasche, H.; Prinz, M.; Hanussek, M.; Lang, M.; Bartusch, F.; Gläßle, B.; Krüger, J.; Pühler, A.; Sczyrba, A. (2019): de.NBI Cloud federation through ELIXIR AAI F1000Research,8:842
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
Pankoke, H.; Maus, I.; Loh, G.; Huser, A.; Seifert, J.; Tilker, A.; Hark, S.; Sczyrba, A.; Pelzer, S.; Kleinbolting, J. (2019): Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota. FEMS microbiology letters
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767 OA
Fritz, A.; Hofmann, P.; Majda, S.; Dahms, E.; Dröge, J.; Fiedler, J.; Lesker, T. R.; Belmann, P.; DeMaere, M. Z.; Darling, A. E.; Sczyrba, A.; Bremges, A.; McHardy, A. C. (2019): CAMISIM: simulating metagenomes and microbial communities Microbiome,7:(1):17
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936230 OA
Durante, L.; Hübner, W.; Lauersen, K. J.; Remacle, C. (2019): Characterization of the GPR1/FUN34/YaaH protein family in the green microalga Chlamydomonas suggests their role as intracellular membrane acetate channels Plant Direct,3:(6):e00148
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899 OA
López, J. L.; Lozano, M. J.; Lagares, A.; Fabre, M. L.; Draghi, W. O.; Del Papa, M. F.; Pistorio, M.; Becker, A.; Wibberg, D.; Schlüter, A.; Pühler, A.; Blom, J.; Goesmann, A.; Lagares, A. (2019): Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry mBio,10:(3):e00505-19
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
Nelkner, J.; Henke, C.; Lin, T. W.; Pätzold, W.; Hassa, J.; Jaenicke, S.; Grosch, R.; Pühler, A.; Sczyrba, A.; Schlüter, A. (2019): Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes Genes,10:(6):424
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
Huennefeld, M.; Persicke, M.; Kalinowski, J.; Frunzke, J. (2019): The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum FRONTIERS IN MICROBIOLOGY,10: 1039.:1039
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2935844 OA
Pucker, B.; Schilbert, H.; Schumacher, S. F. (2019): Integrating Molecular Biology and Bioinformatics Education Journal of Integrative Bioinformatics,16:(3)
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870
Haas, T.; Graf, M.; Niess, A.; Busche, T.; Kalinowski, J.; Blombach, B.; Takors, R. (2019): Identifying the Growth Modulon of Corynebacterium glutamicum FRONTIERS IN MICROBIOLOGY,10: 974.:974
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker, B.; Holtgräwe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B. (2019): A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set PLOS ONE,14:(5): e0216233.:e0216233
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | GenBank
 
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker, B. (2019): De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species. Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941092
Liebe, S.; Wibberg, D.; Maiss, E.; Varrelmann, M. (2019): Application of a Reverse Genetic System for Beet Necrotic Yellow Vein Virus to Study Rz1 Resistance Response in Sugar Beet. Frontiers in plant science,10: 1703.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939523 OA
Ruwe, M.; Persicke, M.; Busche, T.; Müller, B.; Kalinowski, J. (2019): Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum Frontiers in Microbiology,10: 2769.:2769
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939577
Cruz Barrera, M.; Jakobs-Schönwandt, D.; Persicke, M.; Gomez, M. I.; Ruppel, S.; Patel, A. (2019): Anhydrobiotic engineering for the endophyte bacterium Kosakonia radicincitans by osmoadaptation and providing exogenously hydroxyectoine. World journal of microbiology & biotechnology,36:(1): 6.:6
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939579
Noster, J.; Hansmeier, N.; Persicke, M.; Chao, T. - C.; Kurre, R.; Popp, J.; Liss, V.; Reuter, T.; Hensel, M. (2019): Blocks in Tricarboxylic Acid Cycle of Salmonella enterica Cause Global Perturbation of Carbon Storage, Motility, and Host-Pathogen Interaction. mSphere,4:(6)
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H.; Zakrzewski, M.; Gravermann, K.; Young, N. D.; Korhonen, P. K.; Gobert, G. N.; Nawaratna, S.; Hasan, S.; Martínez, D. M.; You, H.; Lavin, M.; Jones, M.; Ragan, M. A.; Stoye, J.; Oleaga, A.; Emery, A. M.; Webster, B.; Rollinson, D.; Gasser, R. B.; McManus, D. P.; Krause, L. (2019): Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium PLOS Pathogens,15:(1): e1007513.:e1007513
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2939032
Wichmann, J.; Lauersen, K. J.; Kruse, O. (2019): Green algal hydrocarbon metabolism is an exceptional source of sustainable chemicals. Current opinion in biotechnology,61: 28-37.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2939037
Li, Q.; Rückert, C.; Li, G.; Huang, P.; Schneider, O.; Kalinowski, J.; Jiang, Y.; Zotchev, S. B.; Jiang, C. (2019): Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil. International journal of systematic and evolutionary microbiology,70:(1): 380-387.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938364
Ansorge, R.; Romano, S.; Sayavedra, L.; Porras, M. A. G.; Kupczok, A.; Tegetmeyer, H.; Dubilier, N.; Petersen, J. (2019): Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels. Nature microbiology,4:(12): 2487-2497.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
Graf, M.; Haas, T.; Mueller, F.; Buchmann, A.; Harm-Bekbenbetova, J.; Freund, A.; Niess, A.; Persicke, M.; Kalinowski, J.; Blombach, B.; Takors, R. (2019): Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate Frontiers in Microbiology ,10: 1648.:1648
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839 OA
Nelkner, J.; Tejerizo, G. T.; Hassa, J.; Lin, T. W.; Witte, J.; Verwaaijen, B.; Winkler, A.; Bunk, B.; Spröer, C.; Overmann, J.; Grosch, R.; Pühler, A.; Schlüter, A. (2019): Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics Genes,10:(8):601
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
Brandt, C.; Viehweger, A.; Singh, A.; Pletz, M. W.; Wibberg, D.; Kalinowski, J.; Lerch, S.; Muller, B.; Makarewicz, O. (2019): Assessing genetic diversity and similarity of 435 KPC-carrying plasmids. Scientific reports,9:(1): 11223.:11223
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Lick, S.; Krockel, L.; Wibberg, D.; Winkler, A.; Blom, J.; Goesmann, A.; Kalinowski, J. (2019): Pseudomonas bubulae sp. nov., isolated from beef. International journal of systematic and evolutionary microbiology,70:(1): 292-301.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
Schaffert, L.; Schneiker-Bekel, S.; Dymek, S.; Droste, J.; Persicke, M.; Busche, T.; Brandt, D.; Pühler, A.; Kalinowski, J. (2019): Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110 Frontiers in Microbiology,10: 2448.:2448
PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938470 OA
Henke, N. A.; Wendisch, V. F. (2019): Improved astaxanthin production with Corynebacterium glutamicum by application of a membrane fusion protein Marine Drugs,17:(11): 621.:621
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937747
Assie, A.; Leisch, N.; Meier, D. V.; Gruber-Vodicka, H.; Tegetmeyer, H.; Meyerdierks, A.; Kleiner, M.; Hinzke, T.; Joye, S.; Saxton, M.; Dubilier, N.; Petersen, J. M. (2019): Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). The ISME journal,14:(1): 104-122.
PUB | DOI | WoS | PubMed | Europe PMC | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
Lopatniuk, M.; Myronovskyi, M.; Nottebrock, A.; Busche, T.; Kalinowski, J.; Ostash, B.; Fedorenko, V.; Luzhetskyy, A. (2019): Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites. Applied microbiology and biotechnology,103:(17): 7097–7110.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
Fritsch, V. N.; Loi, V. V.; Busche, T.; Sommer, A.; Tedin, K.; Nurnberg, D. J.; Kalinowski, J.; Bernhardt, J.; Fulde, M.; Antelmann, H. (2019): The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>. Antioxidants & redox signaling,31:(16): 1235-1252.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936725
Busse, H. - J.; Kleinhagauer, T.; Glaeser, S. P.; Spergser, J.; Kampfer, P.; Rückert, C. (2019): Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov. International journal of systematic and evolutionary microbiology,69:(9): 2928-2935.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, S.; Baumann, P. T.; Rückert, C.; Nebel, B. A.; Siebert, D.; Schwentner, A.; Eikmanns, B. J.; Hauer, B.; Kalinowski, J.; Takors, R.; Blombach, B. (2019): Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering,55: 220-230.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936721
Bednarz, H.; Roloff, N.; Niehaus, K. (2019): Mass Spectrometry Imaging of the Spatial and Temporal Localization of Alkaloids in Nightshades. Journal of agricultural and food chemistry,67:(49): 13470-13477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
Seeger, B.; Mentz, A.; Knebel, C.; Schmidt, F.; Bednarz, H.; Niehaus, K.; Albaum, S.; Kalinowski, J.; Noll, T.; Steinberg, P.; Marx-Stoelting, P.; Heise, T. (2019): Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology,93:(8): 2321-2333.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
Schaffert, L.; März, C.; Burkhardt, L.; Droste, J.; Brandt, D.; Busche, T.; Rosen, W.; Schneiker-Bekel, S.; Persicke, M.; Pühler, A.; Kalinowski, J. (2019): Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110 Microbial Cell Factories,18:(1): 114.:114
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936458 OA
Gil Lopez, M.; Irla, M.; Fernandes de Brito, L.; Wendisch, V. F. (2019): Characterization of D-arabitol as newly discovered carbon source of Bacillus methanolicus Frontiers in Microbiology,10: 1725.:1725
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr, M.; Ferreira, S.; Al-Dilaimi, A.; Bogeholz, S.; Goesmann, A.; Kalinowski, J.; Knabbe, C.; Faber, L.; Oliveira, J. P.; Rudolph, V. (2019): Fabry disease: Detection of Alu-mediated exon duplication by NGS. Molecular and cellular probes,45: 79-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Sorieul, L.; Rückert, C.; Al-Dilaimi, A.; Winkler, A.; Kalinowski, J.; Pham, D.; Wabete, N.; Boulo, V. (2019): Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia Microbiology resource announcements,8:(34):e00477-19
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937247
Laso-Perez, R.; Hahn, C.; van Vliet, D. M.; Tegetmeyer, H.; Schubotz, F.; Smit, N. T.; Pape, T.; Sahling, H.; Bohrmann, G.; Boetius, A.; Knittel, K.; Wegener, G. (2019): Anaerobic Degradation of Non-Methane Alkanes by "Candidatus Methanoliparia" in Hydrocarbon Seeps of the Gulf of Mexico mBio,10:(4):e01814-19
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937220 OA
Mindt, M.; Hannibal, S.; Heuser, M.; Risse, J. M.; Sasikumar, K.; Nampoothiri, K. M.; Wendisch, V. F. (2019): Fermentative production of N-alkylated glycine derivatives by recombinant Corynebacterium glutamicum using a mutant of imine reductase DpkA from Pseudomonas putida Frontiers in Bioengineering and Biotechnology,7: 232.:232
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937045 OA
Veldmann, K.; Dachwitz, S.; Risse, J. M.; Lee, J. - H.; Sewald, N.; Wendisch, V. F. (2019): Bromination of L-tryptophan in a fermentative process with Corynebacterium glutamicum Frontiers in Bioengineering and Biotechnology ,7: 219.:219
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker, B.; Rückert, C.; Stracke, R.; Viehöver, P.; Kalinowski, J.; Weisshaar, B. (2019): Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome Genes,10:(9):671
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274
Meyer, F.; Bremges, A.; Belmann, P.; Janssen, S.; McHardy, A. C.; Koslicki, D. (2019): Assessing taxonomic metagenome profilers with OPAL Genome biology,20:(1): 51.:51
PUB | DOI | WoS | PubMed | Europe PMC | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934305
Irla, M.; Heggeset, T. M. B.; Naerdal, I.; Paul, L.; Haugen, T.; Le, S. B.; Brautaset, T.; Wendisch, V. F. (2019): Corrigendum: Genome-Based Genetic Tool Development for Bacillus methanolicus. Theta- and Rolling Circle-Replicating Plasmids for Inducible Gene Expression and Application to Methanol-Based Cadaverine Production Frontiers in Microbiology,10: 425.:425
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328
Iszatt, N.; Janssen, S.; Lenters, V.; Dahl, C.; Stigum, H.; Knight, R.; Mandal, S.; Peddada, S.; González, A.; Midtvedt, T.; Eggesbø, M. (2019): Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month Microbiome,7:(1): 34.:34
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273 OA
Gräwe, A.; Dreyer, A.; Vornholt, T.; Barteczko, U.; Buchholz, L.; Drews, G.; Ho, U. L.; Jackowski, M. E.; Kracht, M.; Lüders, J.; Bleckwehl, T.; Rositzka, L.; Ruwe, M.; Wittchen, M.; Lutter, P.; Müller, K.; Kalinowski, J. (2019): A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one,14:(3): e0210940.:0210940
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933667 OA
Perez, F.; Fernandes de Brito, L.; Wendisch, V. F. (2019): Function of L-Pipecolic acid as compatible solute in Corynebacterium glutamicum as basis for its production under hyperosmolar conditions Frontiers in Microbiology,10: 340.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof, L. F.; Haurat, M. F.; Hoffmann, L.; Albersmeier, A.; Wolf, J.; Neu, A.; Pham, T. K.; Albaum, S.; Jakobi, T.; Schouten, S.; Neumann-Schaal, M.; Wright, P. C.; Kalinowski, J.; Siebers, B.; Albers, S. - V. (2019): Early Response of Sulfolobus acidocaldarius to Nutrient Limitation FRONTIERS IN MICROBIOLOGY,9: 3201.:3201
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935517
Schultenkämper, K.; Fernandes de Brito, L.; Gil Lopez, M.; Brautaset, T.; Wendisch, V. F. (2019): Establishment and application of CRISPR interference to affect sporulation, hydrogen peroxide detoxification and mannitol catabolism in the methylotrophic thermophile Bacillus methanolicus Applied Microbiology and Biotechnology,103:(14): 5879–5889.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556 OA
Verwaaijen, B.; Wibberg, D.; Winkler, A.; Zrenner, R.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. (2019): A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani Scientific Reports,9:(1): 7221.:7221
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