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3349 Publikationen

2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939618 OA
Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, and Stoye, Jens. “Finding all maximal perfect haplotype blocks in linear time”. Algorithms for Molecular Biology 15 (2020): 2.
PUB | PDF
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2941202
Schultenkämper, Kerstin, Fernandes de Brito, Luciana, and Wendisch, Volker F. “Impact of CRISPR interference on strain development in biotechnology”. Biotechnol Appl Biochem (2020).
PUB | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941091
Li, Qinyuan, Rückert, Christian, Li, Guiding, Huang, Ping, Schneider, Olha, Kalinowski, Jorn, Jiang, Yi, B Zotchev, Sergey, and Jiang, Cheng-Lin. “Corrigendum: Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil.”. International journal of systematic and evolutionary microbiology 70.1 (2020): 703.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941169
Mao, Yanbo, Gabel, Alexander, Nakel, Thomas, Viehöver, Prisca, Baum, Thomas, Tekleyohans, Dawit Girma, Vo, Dieu, Grosse, Ivo, and Groß-Hardt, Rita. “Selective egg cell polyspermy bypasses the triploid block”. eLife 9 (2020): e52976.
PUB | DOI | PubMed | Europe PMC | EBI - ENA Project
 
2020 | Konferenzbeitrag | Angenommen | PUB-ID: 2939729
Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. “Computing the rearrangement distance of natural genomes”. Proceedings of RECOMB 2020. Accepted. LNBI.
PUB
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. “Computing the rearrangement distance of natural genomes”. arXiv:2001.02139 (2020).
PUB | arXiv
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939598
Sevillya, Gur, Dörr, Daniel, Lerner, Yael, Stoye, Jens, Steel, Mike, and Snir, Sagi. “Horizontal Gene Transfer Phylogenetics: A Random Walk Approach”. Molecular Biology and Evolution (Accepted).
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940387
Fernando Gil, Jose, Wibberg, Daniel, Eini, Omid, Savenkov, Eugene I, Varrelmann, Mark, and Liebe, Sebastian. “Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with Their Host Sugar Beet.”. Viruses 12.1 (2020): 76.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386
Lick, Sonja, Krockel, Lothar, Wibberg, Daniel, Winkler, Annika, Blom, Jochen, Bantleon, Annegret, Goesmann, Alexander, and Kalinowski, Jörn. “Pseudomonas carnis sp. nov., isolated from meat.”. International journal of systematic and evolutionary microbiology (2020).
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939461
Drejer, Eivind B., Chan, Dennis, Haupka, Carsten, Wendisch, Volker F., Brautaset, Trygve, and Irla, Marta. “Methanol-based acetoin production by genetically engineered Bacillus methanolicus”. Green Chemistry 20 (2020): 788-802.
PUB | DOI
 
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker, Boas, Feng, Tao, and Brockington, Samuel. Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker, Boas, Feng, Tao, and Brockington, Samuel. Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker, Boas, Feng, Tao, and Brockington, Samuel. Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker, Boas. Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University, 2020.
PUB | Dateien verfügbar | DOI
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2940694 OA
Pucker, Boas, Pandey, Ashutosh, Weisshaar, Bernd, and Stracke, Ralf. “The R2R3-MYB gene family in banana (Musa acuminata): genome-wide identification, classification and expression patterns”. bioRxiv (2020).
PUB | Download (ext.) | bioRxiv
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2940688 OA
Siadjeu, Christian, Pucker, Boas, Viehöver, Prisca, Albach, Dirk, and Weisshaar, Bernd. “High contiguity de novo genome sequence assembly of Trifoliate yam (Dioscorea dumetorum) using long read sequencing”. bioRxiv (2020).
PUB | Download (ext.) | bioRxiv
 
2020 | Preprint | PUB-ID: 2940602
Haghshenas, Ehsan, Asghari, Hossein, Stoye, Jens, Chauve, Cedric, and Hach, Faraz. “HASLR: Fast Hybrid Assembly of Long Reads”. (2020).
PUB | bioRxiv
 
2020 | Zeitschriftenaufsatz | PUB-ID: 2940492
Epping, Miriam Sophie, Wedde, Severin, Grundmann, Armin, Radukic, Marco, Gröger, Harald, Hummel, Anke, and Viefhues, Martina. “Dielectrophoretic analysis of the impact of isopropyl alcohol on the electric polarisability of Escherichia coli whole-cells”. Analytical Bioanalytical Chemistry (2020).
PUB | DOI
 
2020 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938507
Wendisch, Volker F. “Genome-reduced Corynebacterium glutamicum fit for biotechnological applications”. Minimal Cells: Design, Construction, Biotechnological Applications. Ed. Alvaro R. Lara and Guillermo Gosset Lagarda. Cham: Springer , 2020. 95-116.
PUB | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939840 OA
Hassa, Julia, Wibberg, Daniel, Maus, Irena, Pühler, Alfred, and Schlüter, Andreas. “Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter”. Microorganisms 8.1 (2020): 13.
PUB | PDF | DOI | PubMed | Europe PMC
 
2020 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2938976
Wendisch, Volker F., and Lee, Jin-Ho. “Metabolic engineering in Corynebacterium glutamicum”. Corynebacterium glutamicum – Biology and Biotechnology. Ed. Masayuki Inui and Koichi Toyoda. Springer Nature Switzerland, In Press. Microbiology Monographs.
PUB | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937278
Sgobba, Elvira, and Wendisch, Volker F. “Synthetic microbial consortia for small molecule production”. Current Opinion in Biotechnology 62 (2020): 72–79.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936230
Durante, Lorenzo, Hübner, Wolfgang, Lauersen, Kyle J., and Remacle, Claire. “Characterization of the GPR1/FUN34/YaaH protein family in the green microalga Chlamydomonas suggests their role as intracellular membrane acetate channels”. Plant Direct 3.6 (2019): e00148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941092
Liebe, Sebastian, Wibberg, Daniel, Maiss, Edgar, and Varrelmann, Mark. “Application of a Reverse Genetic System for Beet Necrotic Yellow Vein Virus to Study Rz1 Resistance Response in Sugar Beet.”. Frontiers in plant science 10 (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda, Alfonso, Feng, Tao, Sheehan, Hester, Walker‐Hale, Nathanael, Pucker, Boas, Lopez‐Nieves, Samuel, Guo, Rui, and Brockington, Samuel. “The evolution of betalain biosynthesis in Caryophyllales”. New Phytologist 224.1 (2019): 71-85.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013
Pucker, Boas, and Schilbert, Hanna. “Genomics and Transcriptomics Advance in Plant Sciences”. Molecular Approaches in Plant Biology and Environmental Challenges. Ed. Sudhir P. Singh, Santosh Kumar Upadhyay, Ashutosh Pandey, and Sunil Kumar. Singapore: Springer, 2019. Energy, Environment, and Sustainability.
PUB | DOI
 
2019 | Konferenzbeitrag | PUB-ID: 2940489
S. Epping, Miriam, Grundmann, Armin, Gröger, Harald, and Viefhues, Martina. “Dielectrophoretic analysis: a tool for studying the impact of organic solvents on whole-cell biocatalysts”. 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS2019). 2019. 1014-1015.
PUB
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939579
Noster, Janina, Hansmeier, Nicole, Persicke, Marcus, Chao, Tzu-Chiao, Kurre, Rainer, Popp, Jasmin, Liss, Viktoria, Reuter, Tatjana, and Hensel, Michael. “Blocks in Tricarboxylic Acid Cycle of Salmonella enterica Cause Global Perturbation of Carbon Storage, Motility, and Host-Pathogen Interaction.”. mSphere 4.6 (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807 OA
Busche, Mareike, Pucker, Boas, Viehöver, Prisca, Weisshaar, Bernd, and Stracke, Ralf. “Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2”. G3: Genes|Genomes|Genetics (2019): g3.400847.2019.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
2019 | Datenpublikation | PUB-ID: 2937697 OA
Pucker, Boas, Busche, Mareike, Viehöver, Prisca, Weisshaar, Bernd, and Stracke, Ralf. Genome assemblies of Musa acuminata Dwarf Cavendish. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Datenpublikation | PUB-ID: 2937972 OA
Pucker, Boas, Busche, Mareike, Viehöver, Prisca, Weisshaar, Bernd, and Stracke, Ralf. Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2939887
Campanaro, Stefano, Treu, Laura, Rodriguez-R, Luis M, Kovalovszki, Adam, Ziels, Ryan M, Maus, Irena, Zhu, Xinyu, Kougias, Panagiotis G., Basile, Arianna, Luo, Gang, Schlüter, Andreas, Konstantinidis, Konstantinos T., and Angelidaki, Irini. “The anaerobic digestion microbiome: a collection of 1600 metagenome-assembled genomes shows high species diversity related to methane production”. bioRxiv (2019).
PUB | Download (ext.) | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 16.4 (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker, Boas. De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species. Bielefeld: Universität Bielefeld, 2019.
PUB | PDF | DOI
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936783
Sheehan, Hester, Feng, Tao, Walker‐Hale, Nathanael, Lopez‐Nieves, Samuel, Pucker, Boas, Guo, Rui, Yim, Won C., Badgami, Roshani, Timoneda, Alfonso, Zhao, Lijun, Tiley, Helene, Copetti, Dario, Sanderson, Michael J., Cushman, John C., Moore, Michael J., Smith, Stephen A., and Brockington, Samuel F. “Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales ”. New Phytologist (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2935844 OA
Pucker, Boas, Schilbert, Hanna, and Schumacher, Sina Franziska. “Integrating Molecular Biology and Bioinformatics Education”. Journal of Integrative Bioinformatics (2019).
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker, Boas, Feng, Tao, and Brockington, Samuel F. “Next generation sequencing to investigate genomic diversity in Caryophyllales”. bioRxiv (2019).
PUB | PDF | Download (ext.) | bioRxiv
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2935311 OA
Frey, Katharina, and Pucker, Boas. “Animal, fungi, and plant genome sequences harbour different non-canonical splice sites”. bioRxiv (2019).
PUB | PDF | Download (ext.) | bioRxiv
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker, Boas. “Mapping-based genome size estimation”. bioRxiv (2019).
PUB | PDF | Download (ext.) | bioRxiv
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner, Jan-Simon, Howard, Dakota, and Pucker, Boas. “Influence of neighboring small sequence variants on functional impact prediction”. bioRxiv (2019).
PUB | PDF | Download (ext.) | bioRxiv
 
2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker, Boas, Busche, Mareike, Viehöver, Prisca, Weisshaar, Bernd, and Stracke, Ralf. Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2939244 OA
Holtgräwe, Daniela, Hausmann, Ludger, Rosleff Soerensen, Thomas, Pucker, Boas, Viehöver, Prisca, Töpfer, Reinhard, and Weisshaar, Bernd. “A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock 'Börner' (Vitis riparia x Vitis cinerea) and its Exploitation for Marker Development and Targeted Mapping”. bioRxiv (2019).
PUB | Download (ext.) | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker, Boas, Rückert, Christian, Stracke, Ralf, Viehöver, Prisca, Kalinowski, Jörn, and Weisshaar, Bernd. “Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome”. Genes 10.9 (2019): 671.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker, Boas, Holtgräwe, Daniela, Stadermann, Kai Bernd, Frey, Katharina, Huettel, Bruno, Reinhardt, Richard, and Weisshaar, Bernd. “A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set”. PLOS ONE 14.5 (2019): e0216233.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | GenBank
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
Nelkner, Johanna, Henke, Christian, Lin, Timo Wentong, Pätzold, Wiebke, Hassa, Julia, Jaenicke, Sebastian, Grosch, Rita, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. “Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes”. Genes 10.6 (2019): 424.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937220 OA
Mindt, Melanie, Hannibal, Silvin, Heuser, Maria, Risse, Joe Max, Sasikumar, Keerthi, Nampoothiri, K.Madhavan, and Wendisch, Volker F. “Fermentative production of N-alkylated glycine derivatives by recombinant Corynebacterium glutamicum using a mutant of imine reductase DpkA from Pseudomonas putida”. Frontiers in Bioengineering and Biotechnology 7 (2019): 232.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
Belmann, Peter, Fischer, Björn, Krüger, Jan, Procházka, Michal, Rasche, Helena, Prinz, Manuel, Hanussek, Maximilian, Lang, Martin, Bartusch, Felix, Gläßle, Benjamin, Krüger, Jens, Pühler, Alfred, and Sczyrba, Alexander. “de.NBI Cloud federation through ELIXIR AAI”. F1000Research 8 (2019): 842.
PUB | PDF | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936458 OA
Gil Lopez, Marina, Irla, Marta, Fernandes de Brito, Luciana, and Wendisch, Volker F. “Characterization of D-arabitol as newly discovered carbon source of Bacillus methanolicus”. Frontiers in Microbiology 10 (2019): 1725.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939523 OA
Ruwe, Matthias, Persicke, Marcus, Busche, Tobias, Müller, Benjamin, and Kalinowski, Jörn. “Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum”. Frontiers in Microbiology 10 (2019): 2769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939577
Cruz Barrera, Mauricio, Jakobs-Schönwandt, Désirée, Persicke, Marcus, Gomez, Martha Isabel, Ruppel, Silke, and Patel, Anant. “Anhydrobiotic engineering for the endophyte bacterium Kosakonia radicincitans by osmoadaptation and providing exogenously hydroxyectoine.”. World journal of microbiology & biotechnology 36.1 (2019): 6.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938470 OA
Henke, Nadja Alina, and Wendisch, Volker F. “Improved astaxanthin production with Corynebacterium glutamicum by application of a membrane fusion protein”. Marine Drugs 17 (2019): 621.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938364
Ansorge, Rebecca, Romano, Stefano, Sayavedra, Lizbeth, Porras, Miguel Angel Gonzalez, Kupczok, Anne, Tegetmeyer, Halina, Dubilier, Nicole, and Petersen, Jillian. “Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels.”. Nature microbiology (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936721
Bednarz, Hanna, Roloff, Nils, and Niehaus, Karsten. “Mass Spectrometry Imaging of the Spatial and Temporal Localization of Alkaloids in Nightshades.”. Journal of agricultural and food chemistry (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937747
Assie, Adrien, Leisch, Nikolaus, Meier, Dimitri V, Gruber-Vodicka, Harald, Tegetmeyer, Halina, Meyerdierks, Anke, Kleiner, Manuel, Hinzke, Tjorven, Joye, Samantha, Saxton, Matthew, Dubilier, Nicole, and Petersen, Jillian M. “Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria).”. The ISME journal (2019).
PUB | DOI | WoS | PubMed | Europe PMC | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
Schaffert, Lena, Schneiker-Bekel, Susanne, Dymek, Saskia, Droste, Julian, Persicke, Marcus, Busche, Tobias, Brandt, David, Pühler, Alfred, and Kalinowski, Jörn. “Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110”. Frontiers in Microbiology 10 (2019): 2448.
PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936315 OA
Kamal, Nadia, Ochßner, Iris, Schwandner, Anna, Viehöver, Prisca, Hausmann, Ludger, Töpfer, Reinhard, Weisshaar, Bernd, and Holtgräwe, Daniela. “Characterization of genes and alleles involved in the control of flowering time in grapevine.”. PLoS One 14.7 (2019): e0214703.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | NCBI BioProject
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
Schaffert, Lena, März, Camilla, Burkhardt, Lisa, Droste, Julian, Brandt, David, Busche, Tobias, Rosen, Winfried, Schneiker-Bekel, Susanne, Persicke, Marcus, Pühler, Alfred, and Kalinowski, Jörn. “Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110”. Microbial Cell Factories 18 (2019): 114.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839 OA
Nelkner, Johanna, Tejerizo, Gonzalo Torres, Hassa, Julia, Lin, Timo Wentong, Witte, Julian, Verwaaijen, Bart, Winkler, Anika, Bunk, Boyke, Spröer, Cathrin, Overmann, Jörg, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. “Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics”. Genes 10.8 (2019): 601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937045 OA
Veldmann, Kareen, Dachwitz, Steffen, Risse, Joe Max, Lee, Jin-Ho, Sewald, Norbert, and Wendisch, Volker F. “Bromination of L-tryptophan in a fermentative process with Corynebacterium glutamicum”. Frontiers in Bioengineering and Biotechnology 7 (2019): 219.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935488 OA
Osterloff, Jonas, Nilssen, Ingunn, Jarnegren, Johanna, Van Engeland, Tom, Buhl-Mortensen, Pal, and Nattkemper, Tim Wilhelm. “Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory.”. Scientific reports 9 (2019): 6578.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556 OA
Verwaaijen, Bart, Wibberg, Daniel, Winkler, Anika, Zrenner, Rita, Bednarz, Hanna, Niehaus, Karsten, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. “A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani”. Scientific Reports 9 (2019): 7221.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273 OA
Gräwe, Alexander, Dreyer, Anna, Vornholt, Tobias, Barteczko, Ursela, Buchholz, Luzia, Drews, Gila, Ho, Uyen Linh, Jackowski, Marta Eva, Kracht, Melissa, Lüders, Janina, Bleckwehl, Tore, Rositzka, Lukas, Ruwe, Matthias, Wittchen, Manuel, Lutter, Petra, Müller, Kristian, and Kalinowski, Jörn. “A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.”. PloS one 14.3 (2019): 0210940.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933667 OA
Perez, Fernando, Fernandes de Brito, Luciana, and Wendisch, Volker F. “Function of L-Pipecolic acid as compatible solute in Corynebacterium glutamicum as basis for its production under hyperosmolar conditions”. Frontiers in Microbiology 10 (2019): 340.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2939032
Wichmann, Julian, Lauersen, Kyle J., and Kruse, Olaf. “Green algal hydrocarbon metabolism is an exceptional source of sustainable chemicals.”. Current opinion in biotechnology 61 (2019): 28-37.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2939037
Li, Qinyuan, Rückert, Christian, Li, Guiding, Huang, Ping, Schneider, Olha, Kalinowski, Jorn, Jiang, Yi, Zotchev, Sergey B, and Jiang, Chenglin. “Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil.”. International journal of systematic and evolutionary microbiology (2019).
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939194
Mayer, Gerhard, Quast, Christian, Felden, Janine, Lange, Matthias, Prinz, Manuel, Pühler, Alfred, Lawerenz, Chris, Scholz, Uwe, Gloeckner, Frank Oliver, Mueller, Wolfgang, Marcus, Katrin, and Eisenacher, Martin. “A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects”. BRIEFINGS IN BIOINFORMATICS 20.4 (2019): 1215-1221.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Report | Veröffentlicht | PUB-ID: 2939260
Gagie, Travis, Manzini, Giovanni, Navarro, Gonzalo, and Stoye, Jens. 25 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241. Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2019. Dagstuhl Reports. 9(6).
PUB | DOI
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2939202
Willing, Eyla, Stoye, Jens, and Dias Vieira Braga, Marília. “Computing the Inversion-Indel Distance”. arXiv: 1909.12877 (2019).
PUB | arXiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937247
Laso-Perez, Rafael, Hahn, Cedric, van Vliet, Daan M, Tegetmeyer, Halina, Schubotz, Florence, Smit, Nadine T, Pape, Thomas, Sahling, Heiko, Bohrmann, Gerhard, Boetius, Antje, Knittel, Katrin, and Wegener, Gunter. “Anaerobic Degradation of Non-Methane Alkanes by "Candidatus Methanoliparia" in Hydrocarbon Seeps of the Gulf of Mexico”. mBio 10.4 (2019): e01814-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
Seeger, Bettina, Mentz, Almut, Knebel, Constanze, Schmidt, Flavia, Bednarz, Hanna, Niehaus, Karsten, Albaum, Stefan, Kalinowski, Jörn, Noll, Thomas, Steinberg, Pablo, Marx-Stoelting, Philip, and Heise, Tanja. “Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.”. Archives of toxicology (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
Nguyen, Thanh Van, Wibberg, Daniel, Vigil-Stenman, Theoden, Berckx, Fede, Battenberg, Kai, Demchenko, Kirill N, Blom, Jochen, Fernandez, Maria P, Yamanaka, Takashi, Berry, Alison M, Kalinowski, Jörn, Brachmann, Andreas, and Pawlowski, Katharina. “Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams.”. Genome biology and evolution 11.8 (2019): 2273–2291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Sorieul, Louis, Rückert, Christian, Al-Dilaimi, Arwa, Winkler, Anika, Kalinowski, Jörn, Pham, Dominique, Wabete, Nelly, and Boulo, Viviane. “Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia”. Microbiology resource announcements 8.34 (2019): e00477-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2933775
Perozeni, Federico, Cazzaniga, Stefano, Baier, Thomas, Zanoni, Francesca, Zoccatelli, Gianni, Lauersen, Kyle J., Wobbe, Lutz, and Ballottari, Matteo. “Turning a green alga red. Engineering astaxanthin biosynthesis by intragenic pseudogene revival in Chlamydomonas reinhardtii.: Supplementary information”. bioRxiv (2019).
PUB | bioRxiv
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274
Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C, and Koslicki, David. “Assessing taxonomic metagenome profilers with OPAL”. Genome biology 20.1 (2019): 51.
PUB | DOI | WoS | PubMed | Europe PMC | bioRxiv
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Lick, Sonja, Krockel, Lothar, Wibberg, Daniel, Winkler, Anika, Blom, Jochen, Goesmann, Alexander, and Kalinowski, Jörn. “Pseudomonas bubulae sp. nov., isolated from beef.”. International journal of systematic and evolutionary microbiology (2019).
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938370
Ballas, Panagiotis, Rückert, Christian, Wagener, Karen, Drillich, Marc, Kampfer, Peter, Busse, Hans-Jurgen, and Ehling-Schulz, Monika. “Corynebacterium endometrii sp. nov., isolated from the uterus of a cow with endometritis.”. International journal of systematic and evolutionary microbiology (2019).
PUB | DOI | PubMed | Europe PMC
 
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe, Daniela, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe, Daniela, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe, Daniela, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935517
Schultenkämper, Kerstin, Fernandes de Brito, Luciana, Gil Lopez, Marina, Brautaset, Trygve, and Wendisch, Volker F. “Establishment and application of CRISPR interference to affect sporulation, hydrogen peroxide detoxification and mannitol catabolism in the methylotrophic thermophile Bacillus methanolicus”. Applied Microbiology and Biotechnology 103 (2019): 5879–5889.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
Schelletter, Louise, Albaum, Stefan, Walter, Stefan, Noll, Thomas, and Hoffrogge, Raimund. “Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS”. Applied microbiology and biotechnology (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
Rubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics (In Press).
PUB
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936725
Busse, Hans-Jurgen, Kleinhagauer, Tanita, Glaeser, Stefanie P, Spergser, Joachim, Kampfer, Peter, and Rückert, Christian. “Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov.”. International journal of systematic and evolutionary microbiology (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
Rebets, Yuriy, Nadmid, Suvd, Paulus, Constanze, Dahlem, Charlotte, Herrmann, Jennifer, Huebner, Harald, Rückert, Christian, Kiemer, Alexandra K., Gmeiner, Peter, Kalinowski, Jörn, Mueller, Rolf, and Luzhetskyy, Andriy. “Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis”. Angewandte Chemie International Edition 58.37 (2019): 12930-12934.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, Sebastian, Baumann, Philipp T, Rückert, Christian, Nebel, Bernd A, Siebert, Daniel, Schwentner, Andreas, Eikmanns, Bernhard J, Hauer, Bernhard, Kalinowski, Jörn, Takors, Ralf, and Blombach, Bastian. “Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals.”. Metabolic engineering 55 (2019): 220-230.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
Graf, Michaela, Haas, Thorsten, Mueller, Felix, Buchmann, Anina, Harm-Bekbenbetova, Julia, Freund, Andreas, Niess, Alexander, Persicke, Marcus, Kalinowski, Jörn, Blombach, Bastian, and Takors, Ralf. “Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate”. Frontiers in Microbiology 10 (2019): 1648.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, and Stoye, Jens. “Finding All Maximal Perfect Haplotype Blocks in Linear Time”. Proceedings of WABI 2019. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik , 2019.Vol. 143. Leibniz International Proceedings in Informatics. LIPIcs. 8:1-8:9.
PUB | DOI
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, Roland. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. Proceedings of WABI 2019. Ed. Katharina Huber and Dan Gusfield. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2019.Vol. 143. LIPIcs.
PUB | DOI | Download (ext.)
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
Fritsch, Verena Nadin, Loi, Vu Van, Busche, Tobias, Sommer, Anna, Tedin, Karsten, Nurnberg, Dennis J, Kalinowski, Jörn, Bernhardt, Jorg, Fulde, Marcus, and Antelmann, Haike. “The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>.”. Antioxidants & redox signaling (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
Lopatniuk, Maria, Myronovskyi, Maksym, Nottebrock, Alessia, Busche, Tobias, Kalinowski, Jörn, Ostash, Bohdan, Fedorenko, Viktor, and Luzhetskyy, Andriy. “Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites.”. Applied microbiology and biotechnology 103.17 (2019): 7097–7110.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
Brandt, Christian, Viehweger, Adrian, Singh, Abhijeet, Pletz, Mathias W, Wibberg, Daniel, Kalinowski, Jörn, Lerch, Sandrina, Muller, Bettina, and Makarewicz, Oliwia. “Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.”. Scientific reports 9.1 (2019): 11223 .
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899 OA
López, J. L., Lozano, M. J., Lagares, A., Fabre, M. L., Draghi, W. O., Del Papa, M. F., Pistorio, M., Becker, A., Wibberg, Daniel, Schlüter, Andreas, Pühler, Alfred, Blom, J., Goesmann, A., and Lagares, A. “Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry”. mBio 10.3 (2019): e00505-19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2935647
Reintjes, Greta, Tegetmeyer, Halina, Burgisser, Miriam, Orlic, Sandi, Tews, Ivo, Zubkov, Mikhail, VoSS, Daniela, Zielinski, Oliver, Quast, Christian, Glockner, Frank Oliver, Amann, Rudolf, Ferdelman, Timothy G, and Fuchs, Bernhard M. “On site analysis of bacterial communities of the ultra-oligotrophic South Pacific Gyre.”. Applied and environmental microbiology (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936207
Jaeger, Daniel, Baier, Thomas, and Lauersen, Kyle J. “Intronserter, an advanced online tool for design of intron containing transgenes”. Algal Research 42 (2019): 101588.
PUB | DOI | WoS
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
Pankoke, Helga, Maus, Irena, Loh, Gunnar, Huser, Andrea, Seifert, Jana, Tilker, Alexandra, Hark, Sarah, Sczyrba, Alexander, Pelzer, Stefan, and Kleinbolting, Jessica. “F5Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.”. FEMS microbiology letters (2019).
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
Quehenberger, Julian, Albersmeier, Andreas, Glatzel, Holger, Hackl, Matthias, Kalinowski, Jörn, and Spadiut, Oliver. “A defined cultivation medium for Sulfolobus acidocaldarius”. JOURNAL OF BIOTECHNOLOGY 301 (2019): 56-67.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936087
Mudalungu, Cynthia M, von Torne, Wipert J, Voigt, Kerstin, Rückert, Christian, Schmitz, Stefan, Sekurova, Olga N, Zotchev, Sergey B, and Sussmuth, Roderich D. “Noursamycins, Chlorinated Cyclohexapeptides Identified from Molecular Networking of Streptomyces noursei NTR-SR4.”. Journal of natural products 82.6 (2019): 1478-1486.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936329
Ismail, Mohamed, Frese, Marcel, Patschkowski, Thomas, Ortseifen, Vera, Niehaus, Karsten, and Sewald, Norbert. “Flavin-Dependent Halogenases from Xanthomonas campestris pv. campestris B100 Prefer Bromination over Chlorination”. ADVANCED SYNTHESIS & CATALYSIS 361.11 (2019): 2475-2486.
PUB | DOI | WoS
 
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr, Martin, Ferreira, Susana, Al-Dilaimi, Arwa, Bogeholz, Sonja, Goesmann, Alexander, Kalinowski, Jörn, Knabbe, Cornelius, Faber, Lothar, Oliveira, Joao Paulo, and Rudolph, Volker. “Fabry disease: Detection of Alu-mediated exon duplication by NGS.”. Molecular and cellular probes (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
Arenas-Lopez, Christian, Locker, Jessica, Orol, Diego, Walter, Frederik, Busche, Tobias, Kalinowski, Jörn, Minton, Nigel P, Kovacs, Katalin, and Winzer, Klaus. “The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16.”. Biotechnology for biofuels 12 (2019).
PUB | DOI | WoS | PubMed | Europe PMC
 

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